BAC Information

Click to search

BAC

Clone NameB6Ng01-057G21
Chromosome10 (Build37)
Map Location 18,764,103 - 18,852,371
singlet/doubletdoublet
Overlap geneTpi-rs5
Upstream gene3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646, Nhsl1, Hebp2, EG627729, D10Bwg1379e, EG237300, Perp, Tnfaip3
Downstream geneEG637620, Olig3, Ifngr1, Il22ra2, Il20ra, Slc35d3, Pex7, Map3k5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057G21.bB6Ng01-057G21.g
ACCDH879299DH879300
length130894
definitionDH879299|Mus musculus domesticus DNA, BAC clone: B6Ng01-057G21, 5' end.DH879300|Mus musculus domesticus DNA, BAC clone: B6Ng01-057G21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,764,103 - 18,764,232)(18,851,476 - 18,852,371)
sequence
tttcaaatcagaaaattgaactaactcttgtaatgcatgcgctctctctc
tgtctctgtctctgtctctctcgctctgtctctctctctctctctctctc
tctctctctctctctctctctctctctctc
gaattcagctggacactatttgtcgtataaacagttaagcaagaggccta
gatgaagaagcatagagcagacacacaaaagtgtgacaaccagctactca
gctaccctttccaactctcccttgccaacatcacttgatgatgagcagag
atgagaaactctggacacctcagatagtgttcctcaaagccaagtgctaa
caacatattatgctccaaagagacaatggaaggcatgcacgtggtggtct
gttttgttagggaaagcatttggggagaattcttaccttgctaaaggaag
tatagatataggacagctgttcacttgtcttcttcatgcatatgcctggt
gttgtgtagttatgttaacccacaaaacaagtggcacagtcaaacactaa
ggattcggaaacaaatgccaatgacagacccaatgccacacccttagttg
gcaaatgtaataaaatgtgttcacaaccttagtgctacagcagaaatcct
gtatactttctaagcatctattatcagaaccatgaggaacacacagtctt
taggcacactctttcaggagcttttcctgctacagtctcagaggatgggc
caaaggagagaattaaggcaccaattaaaaagcaatctaatctggaacac
agggtccccaatggagaagcaagagaaagcacccaaggacctgaaggggt
ctgcaaccctataggtggaacaacaatatgaactaaccagtacccccaga
gctcgtgtctctagctgcatatgtagcagaagatggcctaatcggccatc
actgggaagagaggccccttggtattgcaactctatatgcaccagtacat
gggaacgccagggccaagaagtgggagtgggtaggtagggagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_18764103_18764232
seq2: B6Ng01-057G21.b_51_180

seq1  TTTCAAATCAGAAAATTGAACTAACTCTTGTAATGCATGCGCTCTCTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAATCAGAAAATTGAACTAACTCTTGTAATGCATGCGCTCTCTCTC  50

seq1  TGTCTCTGTCTCTGTCTCTCTCGCTCTGTCTCTCTCTCTCTCTCTCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTGTCTCTGTCTCTCTCGCTCTGTCTCTCTCTCTCTCTCTCTCTC  100

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  130
      ||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  130

seq1: chr10_18851476_18852371
seq2: B6Ng01-057G21.g_68_961 (reverse)

seq1  TGCTCCCCTACCTACCCACTCCCACTTCTTGGCCCTGGCGTTCCCCTGTA  50
      |||| |||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGCT-CCCTACCTACCCACTCCCACTTCTTGGCCCTGGCGTTCCCATGTA  49

seq1  CTGGTGCATATAGAGTTTGCAATACCAAGGGGCCTCTCTTCCCAGTGATG  100
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTGGTGCATATAGAG-TTGCAATACCAAGGGGCCTCTCTTCCCAGTGATG  98

seq1  GCCGATTAGGCCATCTTCTGCTACATATGCAGCTAGAGACACGAGCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGATTAGGCCATCTTCTGCTACATATGCAGCTAGAGACACGAGCTCTG  148

seq1  GGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGACCC  198

seq1  CTTCAGGTCCTTGGGTGCTTTCTCTTGCTTCTCCATTGGGGACCCTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGTCCTTGGGTGCTTTCTCTTGCTTCTCCATTGGGGACCCTGTGT  248

seq1  TCCAGATTAGATTGCTTTTTAATTGGTGCCTTAATTCTCTCCTTTGGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATTAGATTGCTTTTTAATTGGTGCCTTAATTCTCTCCTTTGGCCC  298

seq1  ATCCTCTGAGACTGTAGCAGGAAAAGCTCCTGAAAGAGTGTGCCTAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTGAGACTGTAGCAGGAAAAGCTCCTGAAAGAGTGTGCCTAAAGA  348

seq1  CTGTGTGTTCCTCATGGTTCTGATAATAGATGCTTAGAAAGTATACAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTTCCTCATGGTTCTGATAATAGATGCTTAGAAAGTATACAGGA  398

seq1  TTTCTGCTGTAGCACTAAGGTTGTGAACACATTTTATTACATTTGCCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCTGTAGCACTAAGGTTGTGAACACATTTTATTACATTTGCCAAC  448

seq1  TAAGGGTGTGGCATTGGGTCTGTCATTGGCATTTGTTTCCGAATCCTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGTGTGGCATTGGGTCTGTCATTGGCATTTGTTTCCGAATCCTTAG  498

seq1  TGTTTGACTGTGCCACTTGTTTTGTGGGTTAACATAACTACACAACACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGACTGTGCCACTTGTTTTGTGGGTTAACATAACTACACAACACCA  548

seq1  GGCATATGCATGAAGAAGACAAGTGAACAGCTGTCCTATATCTATACTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATATGCATGAAGAAGACAAGTGAACAGCTGTCCTATATCTATACTTC  598

seq1  CTTTAGCAAGGTAAGAATTCTCCCCAAATGCTTTCCCTAACAAAACAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGCAAGGTAAGAATTCTCCCCAAATGCTTTCCCTAACAAAACAGAC  648

seq1  CACCACGTGCATGCCTTCCATTGTCTCTTTGGAGCATAATATGTTGTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACGTGCATGCCTTCCATTGTCTCTTTGGAGCATAATATGTTGTTAG  698

seq1  CACTTGGCTTTGAGGAACACTATCTGAGGTGTCCAGAGTTTCTCATCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGCTTTGAGGAACACTATCTGAGGTGTCCAGAGTTTCTCATCTCT  748

seq1  GCTCATCATCAAGTGATGTTGGCAAGGGAGAGTTGGAAAGGGTAGCTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATCATCAAGTGATGTTGGCAAGGGAGAGTTGGAAAGGGTAGCTGAG  798

seq1  TAGCTGGTTGTCACACTTTTGTGTGTCTGCTCTATGCTTCTTCATCTAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGGTTGTCACACTTTTGTGTGTCTGCTCTATGCTTCTTCATCTAGG  848

seq1  CCTCTTGCTTAACTGTTTATACGACAAATAGTGTCCAGCTGAATTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGCTTAACTGTTTATACGACAAATAGTGTCCAGCTGAATTC  894