BAC Information

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BAC

Clone NameB6Ng01-058C06
Chromosome15 (Build37)10 (Build37)
Map Location 33,313,540 - 33,314,651104,053,956 - 104,054,412
singlet/doubletsingletsinglet
Overlap genePgcp
Upstream geneSema5a, LOC100040962, Sdc2
Downstream gene1700084J12Rik, Tspyl5, LOC675463, Mtdh, Laptm4b, Matn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058C06.bB6Ng01-058C06.g
ACCDH879799DH879800
length1,099959
definitionDH879799|Mus musculus domesticus DNA, BAC clone: B6Ng01-058C06, 5' end.DH879800|Mus musculus domesticus DNA, BAC clone: B6Ng01-058C06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(33,313,540 - 33,314,651)(104,053,956 - 104,054,412)
sequence
gaattcatataaaaatacaacttaaactgcaaaataaaaagtagtatttt
ctttcaagtgtgtgttgtgcagcagcactgacacagtgtcaaaaacacag
gacactaagttggacatagaggcacacacctttaatcccagcacttgaag
gggaaaggtaggcagaactctaaactagagactagcctggtgtgatggtt
tgtatatgcttggcctacagcatggcatcactagaaggtgtggcattgtt
agagtaggtgtgtcactgtgggagctttaatactcttgttgtcgtagctg
cctagaagccagttttctcatagcagccttcagagcaagatgtagaactc
tcagctcctcctgcaccatgcttgcctggaaacttccatgtttccgccat
gatgataacagacagaaatgctcaacctgtaagccagctccaattaaata
gtatccttccttacaagaatttccttggtcatggtgtctgttaatagtaa
aaccctaactaacacgtgctatacacagcaagtgtacccaggacagccag
agtacacaggaaaaaaaaaaaactgtcttgaaaaacaaacaaaaacaaaa
acaaaatgaaacagagaaacaagaaggcctcaggacactggagctagacc
acctgttttattcatacctcagatcagcaacttcctagttacctaaactt
aaactttggtaacttgctttgattctttgtttctcaattttcccatctag
gtaataaggaaaataatttctatctcttgtgcctttttagaaaattaagt
gaagtaatagcctaatctatttaaaacagtgcctgatgcaacccaagttc
ttaataaatattatattttataacttaataagcataactctgaaaacaaa
tctggtacaggagaagataatgttttaaaatgtagcccaattagtgactg
ctctgcttcttagtattttagttacatagtgcactctagagccagtgcta
tagactcactaacatatcctttctctgttcattaagccccatcctcctgt
atgatggaagcctaagaatcttcacactttctatttttaataaccttat
gaattccagaaattcaaataaccccattaaaaatgggatacagagctaaa
caaagaattttcaactgaggaatatcgaatggctgagaagcacctgaaaa
caagttcaacatccttaatcattagggaaatgcaaatcaaaacaaccttg
agattccacctcacactagtcagaatggctaagataaaaaattcaggtga
cagcagatgttggcgaggatgtagagaaagaggaacactcctccattgct
ggtgggattgcaaggttgtacaacaattctggaagtcagtctggaggttc
cttagaaaattggacataatactaccagaatatccagcaatacctctcct
gggcatatacccagaagaagttccaagtggtaataagaacacatgctcca
ctatgttcatagcagtcttatttataagagccagaagctggaaataaccc
agatgtccctcagctattaaaaccaaatagattttaaaaacttgttgagt
gcatattacttttagcttcagaagataacatgtatatttaaggggcattt
agctatcattagttattttgatgacttaaaaaaaaagaacatttgaaatg
tacacttaaacatcttgacctgcaaaatatatttgtccattatattcata
ctataaaagagatttcagaataaaaacttatgttttctaaaaaaatttta
gcttaagtaaaacatcttctatcaaataatacatgcatacacacacacat
gcatacatacatacatatgtatttttacacatatagatgtacatacaatg
tacagatttgtaagacctccagaaaagctctcaaaattcagaggtgtcag
aattgaacaatgaatgttctgtgtcaaaatgatctcttttgttcctacag
gacaaataaacataaaaatagaaaagtagaacagctacattcagctgcca
ctatatcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_33313540_33314651
seq2: B6Ng01-058C06.b_47_1145

seq1  GAATTCATATAAAAATACAACTTAAACTGCAAAATAAAAAGTAGTATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATAAAAATACAACTTAAACTGCAAAATAAAAAGTAGTATTTT  50

seq1  CTTTCAAGTGTGTGTTGTGCAGCAGCACTGACACAGTGTCAAAAACACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAGTGTGTGTTGTGCAGCAGCACTGACACAGTGTCAAAAACACAG  100

seq1  GACACTAAGTTGGACATAGAGGCACACACCTTTAATCCCAGCACTTGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTAAGTTGGACATAGAGGCACACACCTTTAATCCCAGCACTTGAAG  150

seq1  GGGAAAGGTAGGCAGAACTCTAAACTAGAGACTAGCCTGGTGTGATGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGGTAGGCAGAACTCTAAACTAGAGACTAGCCTGGTGTGATGGTT  200

seq1  TGTATATGCTTGGCCTACAGCATGGCATCACTAGAAGGTGTGGCATTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATGCTTGGCCTACAGCATGGCATCACTAGAAGGTGTGGCATTGTT  250

seq1  AGAGTAGGTGTGTCACTGTGGGAGCTTTAATACTCTTGTTGTCGTAGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGGTGTGTCACTGTGGGAGCTTTAATACTCTTGTTGTCGTAGCTG  300

seq1  CCTAGAAGCCAGTTTTCTCATAGCAGCCTTCAGAGCAAGATGTAGAACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAAGCCAGTTTTCTCATAGCAGCCTTCAGAGCAAGATGTAGAACTC  350

seq1  TCAGCTCCTCCTGCACCATGCTTGCCTGGAAACTTCCATGTTTCCGCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCCTCCTGCACCATGCTTGCCTGGAAACTTCCATGTTTCCGCCAT  400

seq1  GATGATAACAGACAGAAATGCTCAACCTGTAAGCCAGCTCCAATTAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATAACAGACAGAAATGCTCAACCTGTAAGCCAGCTCCAATTAAATA  450

seq1  GTATCCTTCCTTACAAGAATTTCCTTGGTCATGGTGTCTGTTAATAGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCTTCCTTACAAGAATTTCCTTGGTCATGGTGTCTGTTAATAGTAA  500

seq1  AACCCTAACTAACACGTGCTATACACAGCAAGTGTACCCAGGACAGCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTAACTAACACGTGCTATACACAGCAAGTGTACCCAGGACAGCCAG  550

seq1  AGTACACAGGAAAAAAAAAAAACTGTCTTGAAAAACAAACAAAAACAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACACAGGAAAAAAAAAAAACTGTCTTGAAAAACAAACAAAAACAAAA  600

seq1  ACAAAATGAAACAGAGAAACAAGAAGGCCTCAGGACACTGGAGCTAGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATGAAACAGAGAAACAAGAAGGCCTCAGGACACTGGAGCTAGACC  650

seq1  ACCTGTTTTATTCATACCTCAGATCAGCAACTTCCTAGTTACCTAAACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTTTATTCATACCTCAGATCAGCAACTTCCTAGTTACCTAAACTT  700

seq1  AAACTTTGGTAACTTGCTTTGATTCTTTGTTTCTCAATTTTCCCATCTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTGGTAACTTGCTTTGATTCTTTGTTTCTCAATTTTCCCATCTAG  750

seq1  GTAATAAGGAAAATAATTTCTATCTCTTGTGCCTTTTTAGAAAATTAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAAGGAAAATAATTTCTATCTCTTGTGCCTTTTTAGAAAATTAAGT  800

seq1  GAAGTAATAGCCTAATCTATTTAAAACAGTGCCTGATGCAACCCAAGTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAATAGCCTAATCTATTTAAAACAGTGCCTGATGCAACCCAAGTTC  850

seq1  TTAATAAATATTATATTTTATAACTTAATAAGCATAACTCTGAAAAACAA  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTAATAAATATTATATTTTATAACTTAATAAGCATAACTCTG-AAAACAA  899

seq1  ATCTGGTACAGGAGAAGATAATGTTTTTAAAATGTAGCCCAATTAGTGAC  950
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATCTGGTACAGGAGAAGATAATG-TTTTAAAATGTAGCCCAATTAGTGAC  948

seq1  TGCTCTGCCTTCTTAGTATTTTAGTTACAATAGTGCAACTCTAGAGCCAG  1000
      ||||||| |||||||||||||||||||| ||||||| |||||||||||||
seq2  TGCTCTG-CTTCTTAGTATTTTAGTTAC-ATAGTGC-ACTCTAGAGCCAG  995

seq1  TGGCTATAGACTCACTAACATATCCTTTCTCTGTTTCATTTAAGCCCCCA  1050
      | ||||||||||||||||||||||||||||||| |||| ||||| |||||
seq2  T-GCTATAGACTCACTAACATATCCTTTCTCTG-TTCA-TTAAG-CCCCA  1041

seq1  TCCTCCTGTATGATGGAAGCCTAAGGAATCCTTCACACTTTCTATTTTTA  1100
      |||||||||||||||||||||||| |||| ||||||||||||||||||||
seq2  TCCTCCTGTATGATGGAAGCCTAA-GAAT-CTTCACACTTTCTATTTTTA  1089

seq1  TATAAAACTTAT  1112
       || || |||||
seq2  -AT-AACCTTAT  1099

seq1: chr10_104053956_104054412
seq2: B6Ng01-058C06.g_72_527 (reverse)

seq1  TGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATTATAAATAAGGCTG  50
      |||||| |||||||||| ||||||||| |||||| ||||||||||| |||
seq2  TGAGGGACATCTGGGTTATTTCCAGCTTCTGGCTCTTATAAATAAGACTG  50

seq1  CTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGTTGGGGCATCTTCT  100
      ||||||| |||||||||||||||| ||| |||||  ||||  | ||||||
seq2  CTATGAACATAGTGGAGCATGTGTTCTTATTACCACTTGGAACTTCTTCT  100

seq1  GGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCGGTAGTACTATGTC  150
      || ||||||||||| ||||||||||||||||  || ||||||| ||||||
seq2  GGGTATATGCCCAGGAGAGGTATTGCTGGATATTCTGGTAGTATTATGTC  150

seq1  CAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGTGGTTGTACAAGCC  200
      ||||||||| | ||||| |||||| || ||||||| | ||||||||| | 
seq2  CAATTTTCTAAGGAACCTCCAGACTGACTTCCAGAATTGTTGTACAACCT  200

seq1  TGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGC  250
      ||||||||||||| ||||||||||||||||||||||||| ||||||||||
seq2  TGCAATCCCACCAGCAATGGAGGAGTGTTCCTCTTTCTCTACATCCTCGC  250

seq1  CAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGT  300
      || ||||||||||||||||||||||| |||||||||||||||||| ||||
seq2  CAACATCTGCTGTCACCTGAATTTTTTATCTTAGCCATTCTGACTAGTGT  300

seq1  GAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGG  350
      |||||||||||||| |||||||||||||||||||||||| ||||||||||
seq2  GAGGTGGAATCTCAAGGTTGTTTTGATTTGCATTTCCCTAATGATTAAGG  350

seq1  ATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCCTCAGGT  400
      ||||||||| | |||||||||||||||| |||||||| |||||||||| |
seq2  ATGTTGAACTTGTTTTCAGGTGCTTCTCAGCCATTCGATATTCCTCAGTT  400

seq1  GAGAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATAGGGTTATTTGA  450
      || ||||||||||| || ||||   |||| |||||||| |||||||||||
seq2  GAAAATTCTTTGTTTAGCTCTGTATCCCA-TTTTTAATGGGGTTATTTGA  449

seq1  TTTTCTG  457
       ||||||
seq2  ATTTCTG  456