BAC Information

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BAC

Clone NameB6Ng01-058J22
Chromosome10 (Build37)
Map Location 109,930,037 - 110,039,765
singlet/doubletdoublet
Overlap gene9230102K24Rik
Upstream geneNav3, LOC100042497, LOC100042502, LOC100042506, LOC100042510, LOC667855
Downstream geneLOC100042518, E2f7, Csrp2, Zdhhc17, EG432502, LOC667904, Osbpl8, Bbs10, Nap1l1, EG382421, Phlda1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058J22.bB6Ng01-058J22.g
ACCDH880149DH880150
length1,145884
definitionDH880149|Mus musculus domesticus DNA, BAC clone: B6Ng01-058J22, 5' end.DH880150|Mus musculus domesticus DNA, BAC clone: B6Ng01-058J22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,930,037 - 109,931,196)(110,038,886 - 110,039,765)
sequence
gaattctcagccctaagatatataatatgaataccttataataaaatggt
cctctaaagctttttataattttgttcttcataactggtaatagttttag
gacatatcatatgacattttaggccctttctaaagtgataccagtcagct
gactgtgacagggataaaggaaagaattcatgtatctcttctagccaaag
cctacatgtgcctaccacctcaactctattgatacagagagttcaggaaa
tatattccaatgccaaagtcaaggattcaatgagtgcaatgagtaataaa
actcaaacttcactcatgtcaccatgaaaccaatgatctcccccttgaat
aagactatagacatagctctgaagagccctgagctctagacatttgccag
agaccagaagatgagatggacaaagacactaaatagagggaacctcttct
cagattacagcaggttaggaggtgatggaataccaactctaccttacaga
atttgcccagatctgttatttagttctatcctatggattagaatcatcaa
gattttattaaaatttgcttcttggtttctcatttgggaaactctaaggt
agcttaccacctactgggtttttttttcctcttactctgataatggcctt
aagatattattccagttcttgacaattaaaaaggcaggacaaatattctc
tttatttatataatgtgtttaaatttcatagataaatgtctttggtttct
tgaagaaagaaaccaaatgcttttatggcattattttcatatcacacctg
cactgcatacactgaaaggcagtacaggttactgcattctgattggataa
acgaaggggatcaaattaagtcttctggcttcaaatttagaggtcttttt
cattaggcaatatgtactagaactctatattccctttttttctggtatgt
gtgggagacatattttatggatgagcatgtacatatgcataatgtgaggg
tggagtgtgggagccagaatcatgtttggtgtacttcataagacctgttc
acttgtgtttagacaaggttctccttgaaccttgagttcagagtagctag
gctgactggtcaatagcctggggtctgtcatttccactatccaac
gaattcagaaacgagccggagtgaatccattctagaaatcagatccacac
atttctgcatgagtctgggcagcctcggtttttacccctacccctgccca
gttttgagctaaagtgttaccagttcttcactttgctagttattcttgaa
ctttaaggcagtttcaagttgtgtgctatttttagacaaatgcaatgatt
ttctagctatgcgtttacgatagaagtataatggagtgtatagtagcacc
agggttaaattagtgtgattgtcctggtctttgggataatcaggctagta
gactgtttactgcagaaacagtacccgaaggctgacggctgtcaaataat
taagctacacttagaggaaccaaatgagttggctttgtgaagttgctttt
cctagattgaaatgcaagcacagagaatacaaggtgagaccggctgagtg
gcagtctacacattcacctttcccctccctttctctccatccttattagg
attgaaagggacttattaggattgcaaggcactcaacagtatatttttta
atgggtcattttatttatttacatttcaaatgttatcccccttcccactt
tcccctacacaaaccccctatccctcccctccccctgattctatgagggt
gcccacccacccacccacccacctactcccacctcacctccctagcattc
ccctacattggggcatcaaaacctttataggaccaaaggcctcctctccc
attgatgccagataaggcaatcctctgcttacatatgaatcaacagtata
ttctaagactcatatccagggtaaaattcttagagagagagagagagaga
gaatgagagagagagagagagagatagagagagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_109930037_109931196
seq2: B6Ng01-058J22.b_46_1190

seq1  GAATTCTCAGCCCTAAGATATATAATATGAATACCTTATAATAAAATGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCCCTAAGATATATAATATGAATACCTTATAATAAAATGGT  50

seq1  CCTCTAAAGCTTTTTATAATTTTGTTCTTCATAACTGGTAATAGTTTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAAAGCTTTTTATAATTTTGTTCTTCATAACTGGTAATAGTTTTAG  100

seq1  GACATATCATATGACATTTTAGGCCCTTTCTAAAGTGATACCAGTCAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATATCATATGACATTTTAGGCCCTTTCTAAAGTGATACCAGTCAGCT  150

seq1  GACTGTGACAGGGATAAAGGAAAGAATTCATGTATCTCTTCTAGCCAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGACAGGGATAAAGGAAAGAATTCATGTATCTCTTCTAGCCAAAG  200

seq1  CCTACATGTGCCTACCACCTCAACTCTATTGATACAGAGAGTTCAGGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACATGTGCCTACCACCTCAACTCTATTGATACAGAGAGTTCAGGAAA  250

seq1  TATATTCCAATGCCAAAGTCAAGGATTCAATGAGTGCAATGAGTAATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCCAATGCCAAAGTCAAGGATTCAATGAGTGCAATGAGTAATAAA  300

seq1  ACTCAAACTTCACTCATGTCACCATGAAACCAATGATCTCCCCCTTGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAACTTCACTCATGTCACCATGAAACCAATGATCTCCCCCTTGAAT  350

seq1  AAGACTATAGACATAGCTCTGAAGAGCCCTGAGCTCTAGACATTTGCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTATAGACATAGCTCTGAAGAGCCCTGAGCTCTAGACATTTGCCAG  400

seq1  AGACCAGAAGATGAGATGGACAAAGACACTAAATAGAGGGAACCTCTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGAAGATGAGATGGACAAAGACACTAAATAGAGGGAACCTCTTCT  450

seq1  CAGATTACAGCAGGTTAGGAGGTGATGGAATACCAACTCTACCTTACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTACAGCAGGTTAGGAGGTGATGGAATACCAACTCTACCTTACAGA  500

seq1  ATTTGCCCAGATCTGTTATTTAGTTCTATCCTATGGATTAGAATCATCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCCCAGATCTGTTATTTAGTTCTATCCTATGGATTAGAATCATCAA  550

seq1  GATTTTATTAAAATTTGCTTCTTGGTTTCTCATTTGGGAAACTCTAAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTATTAAAATTTGCTTCTTGGTTTCTCATTTGGGAAACTCTAAGGT  600

seq1  AGCTTACCACCTACTGGGTTTTTTTTTCCTCTTACTCTGATAATGGCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTACCACCTACTGGGTTTTTTTTTCCTCTTACTCTGATAATGGCCTT  650

seq1  AAGATATTATTCCAGTTCTTGACAATTAAAAAGACAGGACAAATATTCTC  700
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAGATATTATTCCAGTTCTTGACAATTAAAAAGGCAGGACAAATATTCTC  700

seq1  TTTATTTATATAATGTGTTTAAATTTCATAGATAAATGTCTTTGGTTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATATAATGTGTTTAAATTTCATAGATAAATGTCTTTGGTTTCT  750

seq1  TGAAGAAAGAAACCAAATGCTTTTATGGCATTATTTTCATATCACACCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAAGAAACCAAATGCTTTTATGGCATTATTTTCATATCACACCTG  800

seq1  CACTGCATACACTGAAAGGCAGTACAGGTTACTGCATTCTGATTGGATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCATACACTGAAAGGCAGTACAGGTTACTGCATTCTGATTGGATAA  850

seq1  ACGAAGGGGATCAAATTAAGTCTTCTGGCTTCAAATTTAGAGGTC-TTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACGAAGGGGATCAAATTAAGTCTTCTGGCTTCAAATTTAGAGGTCTTTTT  900

seq1  CATTAGGCAATATGTACTAGAACTCTATATTCCC-TTTTTTCTGGTATGT  948
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CATTAGGCAATATGTACTAGAACTCTATATTCCCTTTTTTTCTGGTATGT  950

seq1  GTTGGGAGACATATTTTATGGATGAGCATGTACATATGCATAAATGTGAG  998
      | ||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  G-TGGGAGACATATTTTATGGATGAGCATGTACATATGCAT-AATGTGAG  998

seq1  GGT-GAGTGTGGGAGCCAGAAATCAATGTTTGGTGTACTTCATAAGAACC  1047
      ||| ||||||||||||||| |||| ||||||||||||||||||||| |||
seq2  GGTGGAGTGTGGGAGCCAG-AATC-ATGTTTGGTGTACTTCATAAG-ACC  1045

seq1  TGTCCACCTTGTGGTTTTAGACAAAGTTCCTCCCTGAGACCTGGAAGTCA  1097
      ||| || ||||||  ||||||||| ||| |||| ||| |||| ||  |  
seq2  TGTTCA-CTTGTG--TTTAGACAAGGTT-CTCCTTGA-ACCTTGAGTT--  1088

seq1  CAGAGTAGGCTAGGCTGACTGGTCAATAAGCCCTGGGGCTCTGCCTGTCT  1147
      ||||||| ||||||||||||||||||||   ||||||| |||| |  | |
seq2  CAGAGTA-GCTAGGCTGACTGGTCAATA--GCCTGGGG-TCTGTC-ATTT  1133

seq1  CCACCTATCCAAC  1160
      ||| |||||||||
seq2  CCA-CTATCCAAC  1145

seq1: chr10_110038886_110039765
seq2: B6Ng01-058J22.g_67_949 (reverse)

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTTCTCTCTCTCTCTCTCTCT  50
      |||||||| |||||||||||||||||||| ||||||||||||||||||||
seq2  CTCTCTCTATCTCTCTCTCTCTCTCTCTCATTCTCTCTCTCTCTCTCTCT  50

seq1  CTAAGAATTTTA-CCTGGATATGAGTCTTAGAATATACTGTTGATTCATA  99
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTAAGAATTTTACCCTGGATATGAGTCTTAGAATATACTGTTGATTCATA  100

seq1  TGT-AGCAGAGGATTGCCTTATCTGGCATCAATGGGAGAGGAGGCCTTTG  148
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCAGAGGATTGCCTTATCTGGCATCAATGGGAGAGGAGGCCTTTG  150

seq1  GTCCTATAAAGG-TTTGATGCCCCAATGTAGGGGAATGCTAGGGAGGTGA  197
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTCCTATAAAGGTTTTGATGCCCCAATGTAGGGGAATGCTAGGGAGGTGA  200

seq1  GGTGGGAGTAGGTGGGTGGGTGGGTGGGTGGGCACCCTCATAGAATCAGG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGAGTAGGTGGGTGGGTGGGTGGGTGGGCACCCTCATAGAATCAGG  250

seq1  GGGAGGGGAGGGATAGGGGGTTTGTGTAGGGGAAAGTGGGAAGGGGGATA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGGAGGGATAGGGGGTTTGTGTAGGGGAAAGTGGGAAGGGGGATA  300

seq1  ACATTTGAAATGTAAATAAATAAAATGACCCATTAAAAAATATACTGTTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGAAATGTAAATAAATAAAATGACCCATTAAAAAATATACTGTTG  350

seq1  AGTGCCTTGCAATCCTAATAAGTCCCTTTCAATCCTAATAAGGATGGAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTTGCAATCCTAATAAGTCCCTTTCAATCCTAATAAGGATGGAGA  400

seq1  GAAAGGGAGGGGAAAGGTGAATGTGTAGACTGCCACTCAGCCGGTCTCAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGAGGGGAAAGGTGAATGTGTAGACTGCCACTCAGCCGGTCTCAC  450

seq1  CTTGTATTCTCTGTGCTTGCATTTCAATCTAGGAAAAGCAACTTCACAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATTCTCTGTGCTTGCATTTCAATCTAGGAAAAGCAACTTCACAAA  500

seq1  GCCAACTCATTTGGTTCCTCTAAGTGTAGCTTAATTATTTGACAGCCGTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACTCATTTGGTTCCTCTAAGTGTAGCTTAATTATTTGACAGCCGTC  550

seq1  AGCCTTCGGGTACTGTTTCTGCAGTAAACAGTCTACTAGCCTGATTATCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCGGGTACTGTTTCTGCAGTAAACAGTCTACTAGCCTGATTATCC  600

seq1  CAAAGACCAGGACAATCACACTAATTTAACCCTGGTGCTACTATACACTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACCAGGACAATCACACTAATTTAACCCTGGTGCTACTATACACTC  650

seq1  CATTATACTTCTATCGTAAACGCATAGCTAGAAAATCATTGCATTTGTCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATACTTCTATCGTAAACGCATAGCTAGAAAATCATTGCATTTGTCT  700

seq1  AAAAATAGCACACAACTTGAAACTGCCTTAAAGTTCAAGAATAACTAGCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAGCACACAACTTGAAACTGCCTTAAAGTTCAAGAATAACTAGCA  750

seq1  AAGTGAAGAACTGGTAACACTTTAGCTCAAAACTGGGCAGGGGTAGGGGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAAGAACTGGTAACACTTTAGCTCAAAACTGGGCAGGGGTAGGGGT  800

seq1  AAAAACCGAGGCTGCCCAGACTCATGCAGAAATGTGTGGATCTGATTTCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCGAGGCTGCCCAGACTCATGCAGAAATGTGTGGATCTGATTTCT  850

seq1  AGAATGGATTCACTCCGGCTCGTTTCTGAATTC  880
      |||||||||||||||||||||||||||||||||
seq2  AGAATGGATTCACTCCGGCTCGTTTCTGAATTC  883