BAC Information

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BAC

Clone NameB6Ng01-059D10
Chromosome10 (Build37)7 (Build37)
Map Location 129,845,019 - 129,846,193138,304,588 - 138,305,202
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804, Olfr805, Olfr806, Olfr807, Olfr808, Olfr809, Olfr810, Olfr811, Olfr812, Olfr813, Olfr814, Olfr815, Olfr816, Olfr1544-ps1, Olfr817-ps1, Olfr818, LOC100043200, Olfr247, LOC100043203, Olfr820, Olfr821, Olfr822, Olfr1542-ps1, Olfr823, LOC382471, Olfr824, LOC672405, Olfr825, Olfr826, Olfr827, Neurod4, 5830405N20Rik, EG625068
Downstream geneLOC100043719, EG623734, EG625109, EG625131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059D10.bB6Ng01-059D10.g
ACCDH880559DH880560
length1,151910
definitionDH880559|Mus musculus domesticus DNA, BAC clone: B6Ng01-059D10, 5' end.DH880560|Mus musculus domesticus DNA, BAC clone: B6Ng01-059D10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(129,845,019 - 129,846,193)(138,304,588 - 138,305,202)
sequence
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
ttctggaatccaccttcttgagttctatttgtgtctgtagaattaacttc
acaggtttcctttgttcccttaatagcagtcctttctataagcatttcac
ctcttccaattttaaacatgttctcaccaaagatactaaatcactgcctg
gttatcagtatctcagacatattcatagacacatttaatttaattcatgg
gcaagaactattagacttgattgattaaaaaaaagaagaagaagaacttg
aaagtcactgaagtacttgataaagtactcagaaaatgaaagagcatttc
ccagttttttaaattcaaacatgtgtgcttgctagatttgtttgttgttt
gtttcctttcaacatatgatagagttggagtggatccagaaaatattcag
gaaagagcgtgaatatgattcaaatatactatgtgaaacgctcaaggaat
taataaacttgatatgaaaaaacaaagtgtacaacctcatggaagctaaa
caatataccacaacataataatcacatgaaagatgcaaacaagaagaaaa
ctttacaaaataaaatggaatgtcaaaacagaacttaccaaaatgtattg
gacacagtgaacataattaagtgagaaatgtttacaaaagaaactaccta
ctgtgcatgagagacagagagagcaagagcaagagcgagagtgagagaga
gagaaagtgagagaaagagagagagaaatattttatgtgactgtttcatg
gttctctttgagttcttgggaaagaaaaatcaaaagacaagaacatacaa
caacaaataaaattaaatgaaatatataaccaaattcaagtatgaattat
tgaaatgaaataaataaacagcattctttctttgaaagattaataagttt
aagcatctcctcccaaacagagagtagatgcaatcaataaaatatgtttg
caagaaaacattaaaatagacacaagaaattgaaagtcttatggttatac
cttatatctgaagtacactaaattggaaatgtatagaaataaaaggatat
ggtgtctgggtgtcgggaggggggtcggtgtgtgtcgtgtacatgtggtt
t
gaattccacacccctaagccccttaccccataaaaacccctagctttcga
gctttgtggccgacatccgttatctcctgtgtgggatgcatgtcggtcag
gagctctgtcattaaactacctcgtgtaattacatcaagtcggtctatct
attcgtgattctttgggtgcctgccgaatggggaattgagtgggggtttc
cccactaggttctatcatttggaggccccagcgagatctgcgtgacaccc
aggaaccccgaaagaccccttggaggtacatttgtttgtgtgagtcttgc
atgttgtctgttgtctaagtgtggcaccgctgaatttgtgtcttggtttt
tcagttctgagattgtgggtttgagtcccaccttgtgtcttggtttttta
gttctgagattgtgggtttgagtcccaccttgtgtcttgttttttagttc
tgagattgtgggttcgagtcccacctgggttcccagttctggtattctgt
attctggcagctgccactgtgggccatgaggacctagtggctgcgggagg
gagatgtcctaagaccccgcaggctgcaacactggaagacgttccacagg
tggaagcagagtcactacccccccctccccccccaatcaggaagggtgtc
aatgtggaatccgacccccaacaggaagtcgtgtttggctggttgtacaa
gtccaggcatggacgagtgtgcttagatatactagtgtctttttttctct
gttgctgtcttgtttttgtttgtggttttcatcatgggacatagctggtt
tcaggtctggttttggtcccaaggggttgactgatatcttggttggttta
tgcctgtctcaggttctgggggcttccctggagagatgtcatttggtggt
cgaatgacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_129845019_129846193
seq2: B6Ng01-059D10.b_47_1197

seq1  GAATTCTTTGTTTAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50

seq1  TTCTGGAATCCACCTTCTTGAGTTCTATTTGTGTCTGTAGAATTAACTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAATCCACCTTCTTGAGTTCTATTTGTGTCTGTAGAATTAACTTC  100

seq1  ACAGGTTTCCTTTGTTCCCTTAATAGCAGTCCTTTCTATAAGCATTTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTTTCCTTTGTTCCCTTAATAGCAGTCCTTTCTATAAGCATTTCAC  150

seq1  CTCTTCCAATTTTAAACATGTTCTCACCAAAGATACTAAATCACTGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCAATTTTAAACATGTTCTCACCAAAGATACTAAATCACTGCCTG  200

seq1  GTTATCAGTATCTCAGACATATTCATAGACACATTTAATTTAATTCATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCAGTATCTCAGACATATTCATAGACACATTTAATTTAATTCATGG  250

seq1  GCAAGAACTATTAGACTTGATTGATTAAAAAAAAGAAGAAGAAGAACTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAACTATTAGACTTGATTGATTAAAAAAAAGAAGAAGAAGAACTTG  300

seq1  AAAGTCACTGAAGTACTTGATAAAGTACTCAGAAAATGAAAGAGCATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCACTGAAGTACTTGATAAAGTACTCAGAAAATGAAAGAGCATTTC  350

seq1  CCAGTTTTTTAAATTCAAACATGTGTGCTTGCTAGATTTGTTTGTTGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTTTTAAATTCAAACATGTGTGCTTGCTAGATTTGTTTGTTGTTT  400

seq1  GTTTCCTTTCAACATATGATAGAGTTGGAGTGGATCCAGAAAATATTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTTTCAACATATGATAGAGTTGGAGTGGATCCAGAAAATATTCAG  450

seq1  GAAAGAGCGTGAATATGATTCAAATATACTATGTGAAACGCTCAAGGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGCGTGAATATGATTCAAATATACTATGTGAAACGCTCAAGGAAT  500

seq1  TAATAAACTTGATATGAAAAAACAAAGTGTACAACCTCATGGAAGCTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAACTTGATATGAAAAAACAAAGTGTACAACCTCATGGAAGCTAAA  550

seq1  CAATATACCACAACATAATAATCACATGAAAGATGCAAACAAGAAGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATACCACAACATAATAATCACATGAAAGATGCAAACAAGAAGAAAA  600

seq1  CTTTACAAAATAAAATGGAATGTCAAAACAGAACTTACCAAAATGTATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACAAAATAAAATGGAATGTCAAAACAGAACTTACCAAAATGTATTG  650

seq1  GACACAGTGAACATAATTAAGTGAGAAATGTTTACAAAAGAAACTACCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGTGAACATAATTAAGTGAGAAATGTTTACAAAAGAAACTACCTA  700

seq1  CTGTGCATGAGAGACAGAGAGAGCAAGAGCAAGAGCGAGAGTGAGAGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCATGAGAGACAGAGAGAGCAAGAGCAAGAGCGAGAGTGAGAGAGA  750

seq1  GAGAAAGTGAGAGAAAGAGAGAGAGAAATATTTTATGTGACTGTTTCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGTGAGAGAAAGAGAGAGAGAAATATTTTATGTGACTGTTTCATG  800

seq1  GTTCTCTTTGAGTTCTTGGGAAAGAAAAATCAAAAGACAAGAACATACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTTTGAGTTCTTGGGAAAGAAAAATCAAAAGACAAGAACATACAA  850

seq1  CAACAAATAAAATTAAATGAAAATATATAACCAAATTCAAGTATGAAATT  900
      ||||||||||||||||||| ||||||||||||||||||||||||| ||||
seq2  CAACAAATAAAATTAAATG-AAATATATAACCAAATTCAAGTATG-AATT  898

seq1  ATTGAAATGAAAATAAAATAAAACAAGCAATTCTTTCTTTGAAAAGATTA  950
      ||||||||||||   |||||||   ||| |||||||||||| ||||||||
seq2  ATTGAAATGAAA--TAAATAAA--CAGC-ATTCTTTCTTTG-AAAGATTA  942

seq1  ATAAGTTTAAGGCATCTCCTCCCAAACAGAGAGTAGATGCAAATCAATAA  1000
      |||||||||| ||||||||||||||||||||||||||||| |||||||||
seq2  ATAAGTTTAA-GCATCTCCTCCCAAACAGAGAGTAGATGC-AATCAATAA  990

seq1  AATATGTTTGCAAAGAAAAACATTAAAATAGACACAAGAAATTGAAAGTC  1050
      |||||||||||||   ||||||||||||||||||||||||||||||||||
seq2  AATATGTTTGCAA--GAAAACATTAAAATAGACACAAGAAATTGAAAGTC  1038

seq1  TTATGGTTTATAACTTTAATAATCTGAAGTACACTAAATTGGAAATGTAT  1100
      |||||| ||||| |||  || |||||||||||||||||||||||||||||
seq2  TTATGG-TTATACCTT--AT-ATCTGAAGTACACTAAATTGGAAATGTAT  1084

seq1  AAGAAATAAGAGGGTATATGTGTCTGTGTGTCTGTGAGTGTGTGTCTGTG  1150
       |||||||| ||| |||  ||||||| ||||| | ||| | | ||| |||
seq2  -AGAAATAAAAGGATAT-GGTGTCTGGGTGTC-GGGAG-GGGGGTCGGTG  1130

seq1  TGTGTGTCTGTGTACATGTGTGTTT  1175
      |||||    ||||||||||| ||||
seq2  TGTGT---CGTGTACATGTG-GTTT  1151

seq1: chr7_138304588_138305202
seq2: B6Ng01-059D10.g_371_977

seq1  --------------------------------------------------  0
                                                        
seq2  TTGTCTGTTGTCTAAGTGTGGCACCGCTGAATTTGTGTCTTGGTTTTTCA  50

seq1  -----------------------------TTGTATGTTG---TCTAAGTG  18
                                   |||| | |||   | | ||| 
seq2  GTTCTGAGATTGTGGGTTTGAGTCCCACCTTGTGTCTTGGTTTTTTAGT-  99

seq1  TCTAAG--TGTG-------GCACCACTGAATTTGTGTCTTGGTTTTTCAG  59
      ||| ||  ||||       |  ||||     ||||||||| |||||| ||
seq2  TCTGAGATTGTGGGTTTGAGTCCCAC----CTTGTGTCTT-GTTTTTTAG  144

seq1  TTCTGAGATTGTGGGTTCCAGTCCCACCTGGGTTCCCAGTTCTGGTATTC  109
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTCTGAGATTGTGGGTTCGAGTCCCACCTGGGTTCCCAGTTCTGGTATTC  194

seq1  TGTATTCTGGCAGCTGCCACTGTGGACCGTGAGGACCTAGTGGCTGCAGC  159
      ||||||||||||||||||||||||| || |||||||||||||||||| | 
seq2  TGTATTCTGGCAGCTGCCACTGTGGGCCATGAGGACCTAGTGGCTGCGGG  244

seq1  AGGGAGACATCCTAAGGCCCTGCAAGCTGCAACCCTGGAAGACGTTCCAC  209
      |||||||  ||||||| ||| ||| |||||||| ||||||||||||||||
seq2  AGGGAGATGTCCTAAGACCCCGCAGGCTGCAACACTGGAAGACGTTCCAC  294

seq1  AGGT--------------------------------------GGAAGGGG  221
      ||||                                      ||||||| 
seq2  AGGTGGAAGCAGAGTCACTACCCCCCCCTCCCCCCCCAATCAGGAAGGGT  344

seq1  GTCGATGTGGAATCCGACCCCCGTCAGGAAGTTGCGTTTGGCTCATTGTA  271
      ||| ||||||||||||||||||  |||||||| | ||||||||  |||||
seq2  GTCAATGTGGAATCCGACCCCCAACAGGAAGTCGTGTTTGGCTGGTTGTA  394

seq1  CAAGTCCAGGCTCGGACGAGTGTGCTTAGATATACTGGTGTCTTTTTTTC  321
      |||||||||||  ||||||||||||||||||||||| |||||||||||||
seq2  CAAGTCCAGGCATGGACGAGTGTGCTTAGATATACTAGTGTCTTTTTTTC  444

seq1  TCTGTTGCTGTCTTGTTTTTGTTTGTGGTTTTCGTCATGGAACACAGACA  371
      ||||||||||||||||||||||||||||||||| |||||| ||| ||   
seq2  TCTGTTGCTGTCTTGTTTTTGTTTGTGGTTTTCATCATGGGACATAG---  491

seq1  CCATACATCAGAGGTAAAGTGGAATCCCTCCCTGCCTGTCTGTCTGTGTG  421
                                                        
seq2  --------------------------------------------------  491

seq1  TCTGTCTGTCTTGTTCACTTGTGTGTCCTCCATTAGACCACCTTCTGATT  471
                                                        
seq2  --------------------------------------------------  491

seq1  CTGTTTTGCTTTTGGTTTGTCTGGTTTCAGGTCTGG-TTTGGTCCCAAGG  520
                          |||||||||||||||| |||||||||||||
seq2  --------------------CTGGTTTCAGGTCTGGTTTTGGTCCCAAGG  521

seq1  GGTTGACTGATTATCTTGGTTTGGTTTTAGGCCGGTCTCAGGTTCTGGGG  570
      |||||||||| ||||||||||  | |||| ||| ||||||||||||||||
seq2  GGTTGACTGA-TATCTTGGTT--GGTTTATGCCTGTCTCAGGTTCTGGGG  568

seq1  GCCTTCCCACAGAGAGAGGTCCATTTGGGTTGGTCGCAGTGACAG  615
      | ||||||   |||||| || |||||||  |||||| | ||||||
seq2  G-CTTCCC-TGGAGAGATGT-CATTTGG--TGGTCG-AATGACAG  607