BAC Information

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BAC

Clone NameB6Ng01-059M20
Chromosome14 (Build37)10 (Build37)
Map Location 89,583,423 - 89,584,586104,054,060 - 104,054,363
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668624, LOC668625, Pcdh20
Downstream geneEG328451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059M20.bB6Ng01-059M20.g
ACCDH880971DH880972
length1,142937
definitionDH880971|Mus musculus domesticus DNA, BAC clone: B6Ng01-059M20, 5' end.DH880972|Mus musculus domesticus DNA, BAC clone: B6Ng01-059M20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(89,583,423 - 89,584,586)(104,054,060 - 104,054,363)
sequence
gaattcaacaaatacatatttttttggaaggactgcagaatgcaatggta
ctatgggccataaacaagaagtttaacagaaatagccccaaggatatcta
tgtattctctgtgtctgccacagtttcttcagttacagaacaatggacaa
aggagtaggtagtctctgcgtgaagctggattaaaagcgagaaactttaa
atacagaaatccatgactactctataggacagtaaatgtttctttgcatt
attctataaggagacattgttttataatcctatggcttaaatttgcttga
attttgtaatggaggaaattcacctgaataaatatataaacatatcatat
tctgaagtttaaaaagtattttaatgacaaagtcttcttctctacagaac
atttctgaacacccagtcagaattaaagaactgtgagtgcttctttctct
ggtgatatggagaaatatttgttgcctttgcagaagagaatgttctctca
gtacttccactatctttagtaagttcatttatttttcccatggttaattt
tttttacattttatttctatagatgtttttattagctagcaaagtttatt
ttagttggagtcacattattattattattattaattattatttgattagt
gatgagcatcagatgctcgttaagctgaacatattcaattgaattatatc
tgaattttgctaagtcaccttcaatgctgtcttcactctgtgtcttacat
agtctaattattgaggcaacatgcatcttcctatgtccctagtgctctca
gtatttagaattctttgactttcgattgatggcttagaaccgaaggtact
tacactatgctctcactgagcacagggaattattgagtttgctgcttttg
aagatattctcagcctcagatatgtttctgctggttcagaggaattgaac
tcagccaaggctcaaagcagtccctgagatgttaggttacgctttacttt
gtatagctactctttccccactacactgctgagaagtcttagtgctgtca
cctccactgctccctctgctcttaagtaaagaatgtgggtttcactgacc
tcctcccttatggaggcggcctggaaactgtccacgcagcgt
gaattctcacctgaggaatactgaatggctgagaagcacttgaaaaaaat
gttcaacatctttaatcatcagggaaaagcaaattaaaataaccctgagt
ttccacctcacaccagtcagaatgactaagatcagaaattcaggtgatag
cagatgctggcgaggatgtggagaaagaggaacactcctccattgttgat
gggattgcaagcttgtacaaccactcttgaaattagtctggtggttcctc
agaaaattggacatagtactaagaaaggatcctgcaatacctctactggg
catatggccattgctgttctatccaggaaattttctcctgtgcccatatc
ttcaatgcttttcccctttttcctctataagtttcagtgtttctggtttt
atgaggagttccttaatccacttagatttgactttagtacaaggagatag
gaatggatcacttagaattcttctacatgataattgccagttatgccagc
accatttgttgaaaatgctgtctttttgacactggatggttttatctccc
ttttcaaagatcaaggaccataggtgtgtgggttcatttctgggttttca
attctattccattggtctacttctctgtttctatatcagtaccatgcagt
ttttaatcacaattgctctgtagtacagctttaggtcaggcatggtgatt
ccaccagaggttcttttatctttgagaagagtttttgctatcctaggttt
ttttgttgttccagatgaatttgtagactactctttccaattcgttgaag
aatagagttggaattttgatggggattgcattgaatctgtagattgcttt
tggcagatagccatttttactatattgatcttgccaatcatgagcatggg
agatcttttcatcttctgagatcttctatttctttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_89583423_89584586
seq2: B6Ng01-059M20.b_49_1190

seq1  GAATTCAACAAATACATATTTTTTTGGAAGGACTGCAGAATGCAATGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAAATACATATTTTTTTGGAAGGACTGCAGAATGCAATGGTA  50

seq1  CTATGGGCCATAAACAAGAAGTTTAACAGAAATAGCCCCAAGGATATCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGGCCATAAACAAGAAGTTTAACAGAAATAGCCCCAAGGATATCTA  100

seq1  TGTATTCTCTGTGTCTGCCACAGTTTCTTCAGTTACAGAACAATGGACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCTCTGTGTCTGCCACAGTTTCTTCAGTTACAGAACAATGGACAA  150

seq1  AGGAGTAGGTAGTCTCTGCGTGAAGCTGGATTAAAAGCGAGAAACTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTAGGTAGTCTCTGCGTGAAGCTGGATTAAAAGCGAGAAACTTTAA  200

seq1  ATACAGAAATCCATGACTACTCTATAGGACAGTAAATGTTTCTTTGCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAAATCCATGACTACTCTATAGGACAGTAAATGTTTCTTTGCATT  250

seq1  ATTCTATAAGGAGACATTGTTTTATAATCCTATGGCTTAAATTTGCTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATAAGGAGACATTGTTTTATAATCCTATGGCTTAAATTTGCTTGA  300

seq1  ATTTTGTAATGGAGGAAATTCACCTGAATAAATATATAAACATATCATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTAATGGAGGAAATTCACCTGAATAAATATATAAACATATCATAT  350

seq1  TCTGAAGTTTAAAAAGTATTTTAATGACAAAGTCTTCTTCTCTACAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGTTTAAAAAGTATTTTAATGACAAAGTCTTCTTCTCTACAGAAC  400

seq1  ATTTCTGAACACCCAGTCAGAATTAAAGAACTGTGAGTGCTTCTTTCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGAACACCCAGTCAGAATTAAAGAACTGTGAGTGCTTCTTTCTCT  450

seq1  GGTGATATGGAGAAATATTTGTTGCCTTTGCAGAAGAGAATGTTCTCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATATGGAGAAATATTTGTTGCCTTTGCAGAAGAGAATGTTCTCTCA  500

seq1  GTACTTCCACTATCTTTAGTAAGTTCATTTATTTTTCCCATGGTTAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTCCACTATCTTTAGTAAGTTCATTTATTTTTCCCATGGTTAATTT  550

seq1  TTTTTACATTTTATTTCTATAGATGTTTTTATTAGCTAGCAAAGTTTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACATTTTATTTCTATAGATGTTTTTATTAGCTAGCAAAGTTTATT  600

seq1  TTAGTTGGAGTCACATTATTATTATTATTATTAATTATTATTTGATTAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTGGAGTCACATTATTATTATTATTATTAATTATTATTTGATTAGT  650

seq1  GATGAGCATCAGATGCTCGTTAAGCTGAACATATTCAATTGAATTATATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGCATCAGATGCTCGTTAAGCTGAACATATTCAATTGAATTATATC  700

seq1  TGAATTTTGCTAAGTCACCTTCAATGCTGTCTTCACTCTGTGTCTTACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTTGCTAAGTCACCTTCAATGCTGTCTTCACTCTGTGTCTTACAT  750

seq1  AGTCTAATTATTGAGGCAACATGCATCTTCCTATGTCCCTAGTGCTCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAATTATTGAGGCAACATGCATCTTCCTATGTCCCTAGTGCTCTCA  800

seq1  GTATTTAGAATTCTTTGACTTTCGATTGATGGCTTAGAACCGAAGGTACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTAGAATTCTTTGACTTTCGATTGATGGCTTAGAACCGAAGGTACT  850

seq1  TACACTATGCTCTCACTGAGCACAGGGAATTATTGAGTTTGCTGCTTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TACACTATGCTCTCACTGAGCACAGGGAATTATTGAGTTTGCTGC-TTTT  899

seq1  GAAGGATATTTCTCAGCCTCAGATATGTTTCTGCTGGTTCAAGAAGAAAT  950
      ||| |||| ||||||||||||||||||||||||||||||||   || |||
seq2  GAA-GATA-TTCTCAGCCTCAGATATGTTTCTGCTGGTTCA--GAGGAAT  945

seq1  TGAACTCAGCCAAGGCTCAAAGGCAAGTCCCTGAAGATGTTAGGGTTACG  1000
      ||||||||||||||||||||||   |||||||| |||||||| |||||||
seq2  TGAACTCAGCCAAGGCTCAAAG--CAGTCCCTG-AGATGTTA-GGTTACG  991

seq1  CTTTACTTTGTATAGCTACTCTTTCCCCACTACACTGCTGAGAAAGTCTA  1050
      |||||||||||||||||||||||||||||||||||||||||| |||||| 
seq2  CTTTACTTTGTATAGCTACTCTTTCCCCACTACACTGCTGAG-AAGTCTT  1040

seq1  AGTGCTGTCACCTCCACTGGCTTCCACTTCTGCCTCCTTAAAGTAAAAGA  1100
      |||||||||||||||||| ||| || || ||     ||| |||| |||||
seq2  AGTGCTGTCACCTCCACT-GCTCCCTCTGCT-----CTT-AAGT-AAAGA  1082

seq1  ATGTGGGTTCTACTTGACCTTCTTCACTTAGTGAGGCGGCCTGGAAACTG  1150
      |||||||||  || ||||| || || ||||  ||||||||||||||||||
seq2  ATGTGGGTTTCAC-TGACC-TCCTCCCTTATGGAGGCGGCCTGGAAACTG  1130

seq1  TCCACCGGCAGCGT  1164
      |||||  |||||||
seq2  TCCAC--GCAGCGT  1142

seq1: chr10_104054060_104054363
seq2: B6Ng01-059M20.g_66_370 (reverse)

seq1  ATATGCCCAGAAGAGGTATTGCTGGATCCTCCGGTAGTACTATGTCCAAT  50
      |||||||||| ||||||||||| |||||||    ||||||||||||||||
seq2  ATATGCCCAGTAGAGGTATTGCAGGATCCTTTCTTAGTACTATGTCCAAT  50

seq1  TTTCTGACGAACCGCCAGACGGATTTCCAGAGTGGTTGTACAAGCCTGCA  100
      ||||||| ||||| ||||||  ||||| ||||||||||||||||| ||||
seq2  TTTCTGAGGAACCACCAGACTAATTTCAAGAGTGGTTGTACAAGCTTGCA  100

seq1  ATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGC  150
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGC  150

seq1  ATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGG  200
      ||||||| |||||||||||| ||||||||| |||||||||||||||||||
seq2  ATCTGCTATCACCTGAATTTCTGATCTTAGTCATTCTGACTGGTGTGAGG  200

seq1  TGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGT  250
      ||||| ||||||||| |||| |||||| |||||||||||||||| |||||
seq2  TGGAAACTCAGGGTTATTTTAATTTGCTTTTCCCTGATGATTAAAGATGT  250

seq1  TGAACA-TTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCCTCAGGTGAG  299
      |||||| |||||||| ||||||||| ||||||| ||||||||||||||||
seq2  TGAACATTTTTTTCAAGTGCTTCTCAGCCATTCAGTATTCCTCAGGTGAG  300

seq1  AATTC  304
      |||||
seq2  AATTC  305