BAC Information

Click to search

BAC

Clone NameB6Ng01-060E18
Chromosome10 (Build37)
Map Location 72,967,356 - 73,133,599
singlet/doubletdoublet
Overlap geneLOC100039981
Upstream geneZwint, LOC432471, LOC544705
Downstream geneLOC623191, Pcdh15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060E18.bB6Ng01-060E18.g
ACCDH881308DH881309
length1,1261,126
definitionDH881308|Mus musculus domesticus DNA, BAC clone: B6Ng01-060E18, 5' end.DH881309|Mus musculus domesticus DNA, BAC clone: B6Ng01-060E18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,132,467 - 73,133,599)(72,967,356 - 72,968,500)
sequence
gaattcttttttttttcttacaaatagtgtcttaatagtcttttaccaaa
agacatttgaaagaaattttaatttagttataaaagtaaaactttgaata
ctacttaacctgagttgattataataaagatatagaacaaaaagtatgga
attagtgagtttgggtatattaatattgctctctgtgaaggtaatttcct
ttctgggacctttcaggtgtcacttccacttcagtggaagaatttaggaa
aactatgaaaccaattggtcagtgaataaataaattgagtacattatttt
atgcttttagactgttttgcatattccttcattcatttattgacataaac
tcctgagatgagtcagcctgtgtttttttcccatattttaggcagtacgg
ataaataataaatcaaactcttaaacacatccttccagcttgtccctgac
agaaatgttatcatcatgatgctgaggtcagatacagaaggagcaagcaa
ggagtcatttttactcaagggatcaattaaatataaaaatagagtatttc
tagagaagcgatgcaaaaacagaccaaaggtcactggcacctagctccta
agattaggaaagaagcaaacagctgattttcaaagacaaaaagactttac
cactaataggatactcactgtctttctaaatgtgtcatctccaaatttcg
ttcccatattgggcctggccccatgattactagtaggaaaaatcgataca
ctgataggactgagttttctttagtctcttttgttgaatgctgtctagcc
tctaaatgtttccatggatctgttgtcaggttggttgttagtatctgatc
tttctttaaattctgtgagacatcttgattctaaggaaggtaacaataac
ccagcgttcatacctcatagcttgatggtcccttgcaacaaaggattaat
taaaaataaaatgtagtctttgttttttcttatttttttaagatatctaa
gttaccagaactggctacatgtaacattgtggttttcagttctgcctata
cagtgtcatcaacccagagcactttgattcacctggtgctatgacctgtg
ggatgtcaatcaggagggattcctgc
gaattcatgaattaaaatcatccccaatgcaccattgcttcatagcattg
tctatcagaatccaagctcctggtcagcttcccctgtggaagagccattt
gggaacctatggatgtgagcgagttcccacagtgcttacccttgttcaca
aatatatgatcttctattcttgctaagcctttgaactgacaaagcctatt
cctggctttaaatatgtgtgttccacaggtactggatggttttctaatct
cctgtatcaaccaatcaaccaggattgaaatacccatgttttttatttat
attcctcaaaacttactagttatgtgtcctagaacacatggaatctattg
ctggagaattaacttatttatttattggacattttatttatttacatttc
gaatgttatcccctttcccagtttcccttcctcaaacctcctatcccatc
cccctgcttctatgagagtgcttgattgcagatggtggaggatgtggaga
aagtggaacactcctccattgctggtgggattgcaagctggtacagccac
tctggaaatcagtctcgaggtccctcagaaaattggacatagtactacct
gaggacctagctataccactcctggacatatagtcaaaaaatgcttcaac
atatagcaaggacacatgctgcactatgttcatagtagacttatttataa
tagccagaaagctggaaagaacccagatgtccttcaacacaggaatggat
acagaaaatgtggtacatttatgcaatggagtactactcagttaaaaatg
ttttatttaagagaattaacaagaaggaaaacctttagtaaatttttgct
ctaaagtactctagaggccaaaagtagcaatttctgggactcactaagtc
aaaatttgacttctgcaaattcaattacacttccagatgcttagctttag
atgtgttaagccagctgattttctctcaaatctttgtgacttgcagaaac
agtggaggagctgatcctaattgtctctctataaatatgactattgtaaa
attttaggcattctgcaaaaaaagacaggcaaatggtatattggttgaag
ctctttgctttctttctttgtttttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_73132467_73133599
seq2: B6Ng01-060E18.b_48_1173 (reverse)

seq1  GCAGTAATCCTTCCTGATTGACATCCCCACAGTTCATAGCACCA-GTGAT  49
      |||| ||||| ||||||||||||| ||||||| ||||||||||| |||| 
seq2  GCAGGAATCCCTCCTGATTGACAT-CCCACAGGTCATAGCACCAGGTGAA  49

seq1  TCAAAGTGCTCTGTGTTGATGACACTGTATAAGCCAGAACTGAAAACCAC  99
      ||||||||||||| |||||||||||||||| || ||||||||||||||||
seq2  TCAAAGTGCTCTGGGTTGATGACACTGTAT-AGGCAGAACTGAAAACCAC  98

seq1  ATTGTTACAATGTAGCCAGTTTCTGGTAACTTAGATATCTTAAAAAAATA  149
      | |||||| |||||||||| ||||||||||||||||||||||||||||| 
seq2  AATGTTAC-ATGTAGCCAG-TTCTGGTAACTTAGATATCTTAAAAAAAT-  145

seq1  AAGAAAAAACAAAAGACTACATTTTATTTTTAATTAATCCTTTGTTGCAA  199
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAAC-AAAGACTACATTTTATTTTTAATTAATCCTTTGTTGCAA  194

seq1  GGGACCATTCAAGCTATGAGGTATGAAACGCTGGGTTATTGTTACCTTCC  249
      ||||||| ||||||||||||||||| ||||||||||||||||||||||||
seq2  GGGACCA-TCAAGCTATGAGGTATG-AACGCTGGGTTATTGTTACCTTCC  242

seq1  TTAGAATCAAGATGTCTCACAGAATTTAAAGAAAGATCAGATACTAACAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATCAAGATGTCTCACAGAATTTAAAGAAAGATCAGATACTAACAA  292

seq1  CCAACCTGACAACAGATCCATGGAAACATTTAGAGGCTAGACAGCATTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCTGACAACAGATCCATGGAAACATTTAGAGGCTAGACAGCATTCA  342

seq1  ACAAAAGAGACTAAAGAAAACTCAGTCCTATCAGTGTATCGATTTTTCCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGAGACTAAAGAAAACTCAGTCCTATCAGTGTATCGATTTTTCCT  392

seq1  ACTAGTAATCATGGGGCCAGGCCCAATATGGGAACGAAATTTGGAGATGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTAATCATGGGGCCAGGCCCAATATGGGAACGAAATTTGGAGATGA  442

seq1  CACATTTAGAAAGACAGTGAGTATCCTATTAGTGGTAAAGTCTTTTTGTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTAGAAAGACAGTGAGTATCCTATTAGTGGTAAAGTCTTTTTGTC  492

seq1  TTTGAAAATCAGCTGTTTGCTTCTTTCCTAATCTTAGGAGCTAGGTGCCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAATCAGCTGTTTGCTTCTTTCCTAATCTTAGGAGCTAGGTGCCA  542

seq1  GTGACCTTTGGTCTGTTTTTGCATCGCTTCTCTAGAAATACTCTATTTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCTTTGGTCTGTTTTTGCATCGCTTCTCTAGAAATACTCTATTTTT  592

seq1  ATATTTAATTGATCCCTTGAGTAAAAATGACTCCTTGCTTGCTCCTTCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAATTGATCCCTTGAGTAAAAATGACTCCTTGCTTGCTCCTTCTG  642

seq1  TATCTGACCTCAGCATCATGATGATAACATTTCTGTCAGGGACAAGCTGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGACCTCAGCATCATGATGATAACATTTCTGTCAGGGACAAGCTGG  692

seq1  AAGGATGTGTTTAAGAGTTTGATTTATTATTTATCCGTACTGCCTAAAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGTGTTTAAGAGTTTGATTTATTATTTATCCGTACTGCCTAAAAT  742

seq1  ATGGGAAAAAAACACAGGCTGACTCATCTCAGGAGTTTATGTCAATAAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAAAAAAACACAGGCTGACTCATCTCAGGAGTTTATGTCAATAAAT  792

seq1  GAATGAAGGAATATGCAAAACAGTCTAAAAGCATAAAATAATGTACTCAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAAGGAATATGCAAAACAGTCTAAAAGCATAAAATAATGTACTCAA  842

seq1  TTTATTTATTCACTGACCAATTGGTTTCATAGTTTTCCTAAATTCTTCCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTCACTGACCAATTGGTTTCATAGTTTTCCTAAATTCTTCCA  892

seq1  CTGAAGTGGAAGTGACACCTGAAAGGTCCCAGAAAGGAAATTACCTTCAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTGGAAGTGACACCTGAAAGGTCCCAGAAAGGAAATTACCTTCAC  942

seq1  AGAGAGCAATATTAATATACCCAAACTCACTAATTCCATACTTTTTGTTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCAATATTAATATACCCAAACTCACTAATTCCATACTTTTTGTTC  992

seq1  TATATCTTTATTATAATCAACTCAGGTTAAGTAGTATTCAAAGTTTTACT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTTTATTATAATCAACTCAGGTTAAGTAGTATTCAAAGTTTTACT  1042

seq1  TTTATAACTAAATTAAAATTTCTTTCAAATGTCTTTTGGTAAAAGACTAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAACTAAATTAAAATTTCTTTCAAATGTCTTTTGGTAAAAGACTAT  1092

seq1  TAAGACACTATTTGTAAGAAAAAAAAAAGAATTC  1133
      ||||||||||||||||||||||||||||||||||
seq2  TAAGACACTATTTGTAAGAAAAAAAAAAGAATTC  1126

seq1: chr10_72967356_72968500
seq2: B6Ng01-060E18.g_68_1193

seq1  GAATTCATGAATTAAAATCATCCCCAATGCACCATTGCTTCATAGCATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAATTAAAATCATCCCCAATGCACCATTGCTTCATAGCATTG  50

seq1  TCTATCAGAATCCAAGCTCCTGGTCAGCTTCCCCTGTGGAAGAGCCATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCAGAATCCAAGCTCCTGGTCAGCTTCCCCTGTGGAAGAGCCATTT  100

seq1  GGGAACCTATGGATGTGAGCGAGTTCCCACAGTGCTTACCCTTGTTCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACCTATGGATGTGAGCGAGTTCCCACAGTGCTTACCCTTGTTCACA  150

seq1  AATATATGATCTTCTATTCTTGCTAAGCCTTTGAACTGACAAAGCCTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATGATCTTCTATTCTTGCTAAGCCTTTGAACTGACAAAGCCTATT  200

seq1  CCTGGCTTTAAATATGTGTGTTCCACAGGTACTGGATGGTTTTCTAATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTTTAAATATGTGTGTTCCACAGGTACTGGATGGTTTTCTAATCT  250

seq1  CCTGTATCAACCAATCAACCAGGATTGAAATACCCATGTTTTTTATTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATCAACCAATCAACCAGGATTGAAATACCCATGTTTTTTATTTAT  300

seq1  ATTCCTCAAAACTTACTAGTTATGTGTCCTAGAACACATGGAATCTATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCAAAACTTACTAGTTATGTGTCCTAGAACACATGGAATCTATTG  350

seq1  CTGGAGAATTAACTTATTTATTTATTGGACATTTTATTTATTTACATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAATTAACTTATTTATTTATTGGACATTTTATTTATTTACATTTC  400

seq1  GAATGTTATCCCCTTTCCCAGTTTCCCTTCCTCAAACCTCCTATCCCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTATCCCCTTTCCCAGTTTCCCTTCCTCAAACCTCCTATCCCATC  450

seq1  CCCCTGCTTCTATGAGAGTGCTTGATTGCAGATGGTGGAGGATGTGGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCTTCTATGAGAGTGCTTGATTGCAGATGGTGGAGGATGTGGAGA  500

seq1  AAGTGGAACACTCCTCCATTGCTGGTGGGATTGCAAGCTGGTACAGCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGAACACTCCTCCATTGCTGGTGGGATTGCAAGCTGGTACAGCCAC  550

seq1  TCTGGAAATCAGTCTCGAGGTCCCTCAGAAAATTGGACATAGTACTACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAATCAGTCTCGAGGTCCCTCAGAAAATTGGACATAGTACTACCT  600

seq1  GAGGACCTAGCTATACCACTCCTGGACATATAGTCAAAAAATGCTTCAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACCTAGCTATACCACTCCTGGACATATAGTCAAAAAATGCTTCAAC  650

seq1  ATATAGCAAGGACACATGCTGCACTATGTTCATAGTAGACTTATTTATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGCAAGGACACATGCTGCACTATGTTCATAGTAGACTTATTTATAA  700

seq1  TAGCCAG-AAGCTGGAAAGAACCCAGATGTCCTTCAACACAGGAATGGAT  749
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGAAAGCTGGAAAGAACCCAGATGTCCTTCAACACAGGAATGGAT  750

seq1  ACAGAAAATGTGGTACATTTATGCAATGGAGTACTACTCAGTTAAAAATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAATGTGGTACATTTATGCAATGGAGTACTACTCAGTTAAAAATG  800

seq1  TTTTATTTAAGAGAATTAACAAGAAGGAAAACCTTTAGTAAATTTTTGCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTAAGAGAATTAACAAGAAGGAAAACCTTTAGTAAATTTTTGCT  850

seq1  CTAAAGTACTCTAGAGGCCAAAAGTAGCAATTTCTGGGACTCACTAAGTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGTACTCTAGAGGCCAAAAGTAGCAATTTCTGGGACTCACTAAGTC  900

seq1  AAAATTTTGAC-TCTGCAAATTCAATTACAACTTCCAGATGCTTAGCTTT  948
      |||| |||||| ||||||||||||||||| ||||||||||||||||||||
seq2  AAAA-TTTGACTTCTGCAAATTCAATTAC-ACTTCCAGATGCTTAGCTTT  948

seq1  AGATGATGTTTAAGCCAGCTGATTTTTCTCTGCAAATCTTTGTGACTTGC  998
      ||||| || ||||||||||||| |||||||| ||||||||||||||||||
seq2  AGATG-TG-TTAAGCCAGCTGA-TTTTCTCT-CAAATCTTTGTGACTTGC  994

seq1  AGAAACACGTGGAGGAGCTGATCTCTAACTGTCTTCTCTATTAAATATGA  1048
      ||||||| ||||||||||||||| |||| |||| |||||| |||||||||
seq2  AGAAACA-GTGGAGGAGCTGATC-CTAATTGTC-TCTCTA-TAAATATGA  1040

seq1  CTTATTGTAGAATTTTTATGGCATTCTGCTAGAGAAAAGACACGGCAGAA  1098
      | ||||||| ||||||   ||||||||||   | |||||||| |||| ||
seq2  C-TATTGTAAAATTTT--AGGCATTCTGC--AAAAAAAGACA-GGCA-AA  1083

seq1  TGGTTATAATTTGTTTGAAGCTCTTTGTTTTTCTTTCATTGTTTTTG  1145
      ||| ||||  ||| |||||||||||||  |||||||| |||||||||
seq2  TGG-TATA--TTGGTTGAAGCTCTTTG-CTTTCTTTCTTTGTTTTTG  1126