BAC Information

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BAC

Clone NameB6Ng01-060J07
Chromosome10 (Build37)
Map Location 62,744,089 - 62,867,348
singlet/doubletdoublet
Overlap geneHerc4, Sirt1, Dnajc12
Upstream geneHk1, 2210417K05Rik, Hkdc1, Supv3l1, Vps26a, Srgn, 2510003E04Rik, Ddx21, Ddx50, Stox1, Ccar1, Cxxc6, Slc25a16, Dna2l, Rufy2, Hnrph3, 3110049J23Rik, Pbld, Atoh7, Mypn, 1700120B22Rik
Downstream geneLOC665182, EG631906, Ctnna3, Lrrtm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060J07.bB6Ng01-060J07.g
ACCDH881517DH881518
length1,0551,042
definitionDH881517|Mus musculus domesticus DNA, BAC clone: B6Ng01-060J07, 5' end.DH881518|Mus musculus domesticus DNA, BAC clone: B6Ng01-060J07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,744,089 - 62,745,155)(62,866,293 - 62,867,348)
sequence
gaattcagtttgttttgagaatgtctcacaaggtgcctctaactggctaa
aacagacccctgctccctggtgctggcagtacacaagtgccaccatgcct
aagtttccactttctctcctgattttagtagtttgaattatctttctaag
tcaatctagtctgtagttgattagatacttttaaaagttgttttgtttta
agtcaggctctctgttgctctctgtctgtcctggaactctgtattgagtt
aaccagacctctgcctcccaaatggtaatactaaagacttgtatcaccag
acttggcaatttaaggcaaacaataataattgtatcagattctgccagta
cagtccttacccagatgagagacagattctcagtacttactacttatctg
ttttcccagaatctactgtccagttccttttttgaaaacttgacctcctt
gctttgtgatgacacagttgctataaattatgtatttatatcgcttctta
aaagtgctgtcacattaaactttttttttaagatttacttattcattata
tgtaagtacactgtagctgtcttcagacactccagaagagggaatcagat
ctcattacagtggttgtgagtgatcatgtgattcctgggatttgaactta
ggaccttcggaagagcagtgtgctcttaatcactgagccatctctccagt
ccacctcattaaacttttattgataaattatttatgttcataggtgtatc
tgtggctttctttctgttagttgtgcaaaccatgtatatagttgtcttaa
tgtgttggctagtatgctagtctaatcattaaaagtactgataatcaggc
atgttttgtttctttgttggaaaactcagtatttcacatttaagtagtat
gtcagtcatagatttttgtaggttttgttttgtttggtctgttttggttt
ggttttggtttttcgatacaggtttctctgtatatccctgttgtcctgaa
ctcctttgtaatcaggctgccttgactcaaatcctgcagtccttgcctct
ccaag
gaattcacttggtagaaggagagaaccaattcttgcaagctgtcctctga
cctctctatatatgctgtggagcacacgcgcgcgcgcacgcgcacacaca
cacacacacacacacacacacacgcatgcacacaacaaatatggaaaggt
tttaggatgctaagcaatctgtgcagctttccacggtcacagagtgtagc
tcagtgtggcacagtctcctgttgctgcctgcacatctaccgatctgcag
atctcagctctcatcagctccagcaccatgactgcctgcgagctgacatg
cttccgaccatgatgataatggactgaacctctgaaattataagccagcc
ccaaatgaatgctttcctttgtaagagttgccatggtcatggtgtctctt
cacagtaataaaacccaaactaagacacctaacaagcctacatcctacag
tgaacatcacggatcccataccacatgacatacatgatgaagctcaccaa
tgattacaacacccaggagctgaaggtaggaggatcaagggttcaaggtc
atctacccttgaatacatattgagtttgaggccagactggtatggtcatg
agaccctgcctcaaaaaaataaataaataaataaataaataaataaataa
ataaataaataaaggagcatcagtagaaatatccagtgatgggctagaga
cagggactaagaggcaaagaggagagaaacgcattggcaagcatgaggca
gagtcagcaaacaccagagggcaaaggtcacgaacactcctgtctgtgaa
gttgggctcctggtattttccactcacaataaacttgtttaccagctttc
tttacagaccttttttttttttttttaggaataatatctttcattctaat
ttcagtcactctagcaatatttttcttttaatctacatgcaataaacatt
ggaagaagaaaccaaaacactggcttcacatgagccacagctcaccgaat
aacaagcaaaattgggtttttcttttttttcaattattgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_62744089_62745155
seq2: B6Ng01-060J07.b_45_1099

seq1  GAATTCAGTTTGTTTTGAGAATGTCTCACAAGGTGCCTCTAACTGGCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTGTTTTGAGAATGTCTCACAAGGTGCCTCTAACTGGCTAA  50

seq1  AACAGACCCCTGCTCCCTGGTGCTGGCAGTACACAAGTGCCACCATGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACCCCTGCTCCCTGGTGCTGGCAGTACACAAGTGCCACCATGCCT  100

seq1  AAGTTTCCACTTTCTCTCCTGATTTTAGTAGTTTGAATTATCTTTCTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCCACTTTCTCTCCTGATTTTAGTAGTTTGAATTATCTTTCTAAG  150

seq1  TCAATCTAGTCTGTAGTTGATTAGATACTTTTAAAAGTTGTTTTGTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCTAGTCTGTAGTTGATTAGATACTTTTAAAAGTTGTTTTGTTTTA  200

seq1  AGTCAGGCTCTCTGTTGCTCTCTGTCTGTCCTGGAACTCTGTATTGAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGCTCTCTGTTGCTCTCTGTCTGTCCTGGAACTCTGTATTGAGTT  250

seq1  AACCAGACCTCTGCCTCCCAAATGGTAATACTAAAGACTTGTATCACCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGACCTCTGCCTCCCAAATGGTAATACTAAAGACTTGTATCACCAG  300

seq1  ACTTGGCAATTTAAGGCAAACAATAATAATTGTATCAGATTCTGCCAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGCAATTTAAGGCAAACAATAATAATTGTATCAGATTCTGCCAGTA  350

seq1  CAGTCCTTACCCAGATGAGAGACAGATTCTCAGTACTTACTACTTATCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTTACCCAGATGAGAGACAGATTCTCAGTACTTACTACTTATCTG  400

seq1  TTTTCCCAGAATCTACTGTCCAGTTCCTTTTTTGAAAACTTGACCTCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCAGAATCTACTGTCCAGTTCCTTTTTTGAAAACTTGACCTCCTT  450

seq1  GCTTTGTGATGACACAGTTGCTATAAATTATGTATTTATATCGCTTCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTGATGACACAGTTGCTATAAATTATGTATTTATATCGCTTCTTA  500

seq1  AAAGTGCTGTCACATTAAACTTTTTTTTTAAGATTTACTTATTCATTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGCTGTCACATTAAACTTTTTTTTTAAGATTTACTTATTCATTATA  550

seq1  TGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAATCAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAATCAGAT  600

seq1  CTCATTACAGTGGTTGTGAGTGATCATGTGATTCCTGGGATTTGAACTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTACAGTGGTTGTGAGTGATCATGTGATTCCTGGGATTTGAACTTA  650

seq1  GGACCTTCGGAAGAGCAGTGTGCTCTTAATCACTGAGCCATCTCTCCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTTCGGAAGAGCAGTGTGCTCTTAATCACTGAGCCATCTCTCCAGT  700

seq1  CCACCTCATTAAACTTTTATTGATAAATTATTTATGTTCATAGGTGTATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCATTAAACTTTTATTGATAAATTATTTATGTTCATAGGTGTATC  750

seq1  TGTGGCTTTCTTTCTGTTAGTTGTGCAAACCATGTATATAGTTGTCTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTTTCTTTCTGTTAGTTGTGCAAACCATGTATATAGTTGTCTTAA  800

seq1  TGTGTTGGCTAGTATGCTAGTCTAATCATT-AAAGTACTGATAATCAGGC  849
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGTGTTGGCTAGTATGCTAGTCTAATCATTAAAAGTACTGATAATCAGGC  850

seq1  ATGTTTTGTTTCTTTGTTGGAAAACTCAGTATTTCACATTTAAGTAGTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTGTTTCTTTGTTGGAAAACTCAGTATTTCACATTTAAGTAGTAT  900

seq1  GTCAGTCATAGATTTTTGTAGGTTTTTGTTTTTGTTTGGTCTGTTTTTGG  949
      ||||||||||||||||||||||||||   ||||||||||||||||||  |
seq2  GTCAGTCATAGATTTTTGTAGGTTTT--GTTTTGTTTGGTCTGTTTT--G  946

seq1  TTTTGGTTTTGGTTTTTCGATACAGGGTTTCTCTGTATATCCCTGGCTGT  999
       ||||||||||||||||||||||| ||||||||||||||||||| | |||
seq2  GTTTGGTTTTGGTTTTTCGATACA-GGTTTCTCTGTATATCCCT-GTTGT  994

seq1  CCTGGAACTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCTGC  1049
      ||| |||||| ||||||| | |||||| |||||| ||||  |||||||| 
seq2  CCT-GAACTC-CTTTGTA-ATCAGGCT-GCCTTG-ACTC--AAATCCTG-  1036

seq1  CTGCCTTTGCCTC-CCAAG  1067
      | | | ||||||| |||||
seq2  CAGTCCTTGCCTCTCCAAG  1055

seq1: chr10_62866293_62867348
seq2: B6Ng01-060J07.g_69_1110 (reverse)

seq1  AAACAATAATTTGAAAAAAAAGAAAAACCCAATTTTTGCTTGTTATTCGG  50
      ||||||||| |||||||||||||||||||||| |||||||||||||||||
seq2  AAACAATAA-TTGAAAAAAAAGAAAAACCCAA-TTTTGCTTGTTATTCGG  48

seq1  CTGAGCTGTGGCTCATGTG-AGCCAGTTGTTTTTGGTTTCCTTTTTCCAA  99
       |||||||||||||||||| |||||||   ||||||||| ||| ||||||
seq2  -TGAGCTGTGGCTCATGTGAAGCCAGT--GTTTTGGTTT-CTTCTTCCAA  94

seq1  TGTTTAATGGCATGTAGATTAAAAGAAAAATATTTGCTAGTGTTGACTGA  149
      ||||| || ||||||||||||||||||||||| ||||||| | |||||||
seq2  TGTTT-ATTGCATGTAGATTAAAAGAAAAATA-TTGCTAGAG-TGACTGA  141

seq1  AATTTAGAATGTAAGATAATTATTTCCTAAAAAAAAAAAAAAAAAAGGTC  199
      || |||||||| ||||| |||| |||||  ||||||||||||||||||||
seq2  AA-TTAGAATGAAAGAT-ATTA-TTCCT--AAAAAAAAAAAAAAAAGGTC  186

seq1  TGTTAAAGAAAGCTGGTAAACAAGTTTATTGTGAGTGGAAAATACCAGGA  249
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TG-TAAAGAAAGCTGGTAAACAAGTTTATTGTGAGTGGAAAATACCAGGA  235

seq1  GCCCAACTTCACAGACAGGAGTGTTCGTGACCTTTGCCCTCTGGTGTTTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAACTTCACAGACAGGAGTGTTCGTGACCTTTGCCCTCTGGTGTTTG  285

seq1  CTGACTCTGCCTCATGCTTGCCAATGCGTTTCTCTCCTCTTTGCCTCTTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCTGCCTCATGCTTGCCAATGCGTTTCTCTCCTCTTTGCCTCTTA  335

seq1  GTCCCTGTCTCTAGCCCATCACTGGATATTTCTACTGATGCTCCTTTATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGTCTCTAGCCCATCACTGGATATTTCTACTGATGCTCCTTTATT  385

seq1  TATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTTTTGAGGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTTTTGAGGC  435

seq1  AGGGTCTCATGACCATACCAGTCTGGCCTCAAACTCAATATGTATTCAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTCATGACCATACCAGTCTGGCCTCAAACTCAATATGTATTCAAG  485

seq1  GGTAGATGACCTTGAACCCTTGATCCTCCTACCTTCAGCTCCTGGGTGTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGATGACCTTGAACCCTTGATCCTCCTACCTTCAGCTCCTGGGTGTT  535

seq1  GTAATCATTGGTGAGCTTCATCATGTATGTCATGTGGTATGGGATCCGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCATTGGTGAGCTTCATCATGTATGTCATGTGGTATGGGATCCGTG  585

seq1  ATGTTCACTGTAGGATGTAGGCTTGTTAGGTGTCTTAGTTTGGGTTTTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCACTGTAGGATGTAGGCTTGTTAGGTGTCTTAGTTTGGGTTTTAT  635

seq1  TACTGTGAAGAGACACCATGACCATGGCAACTCTTACAAAGGAAAGCATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGAAGAGACACCATGACCATGGCAACTCTTACAAAGGAAAGCATT  685

seq1  CATTTGGGGCTGGCTTATAATTTCAGAGGTTCAGTCCATTATCATCATGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGGGGCTGGCTTATAATTTCAGAGGTTCAGTCCATTATCATCATGG  735

seq1  TCGGAAGCATGTCAGCTCGCAGGCAGTCATGGTGCTGGAGCTGATGAGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAAGCATGTCAGCTCGCAGGCAGTCATGGTGCTGGAGCTGATGAGAG  785

seq1  CTGAGATCTGCAGATCGGTAGATGTGCAGGCAGCAACAGGAGACTGTGCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATCTGCAGATCGGTAGATGTGCAGGCAGCAACAGGAGACTGTGCC  835

seq1  ACACTGAGCTACACTCTGTGACCGTGGAAAGCTGCACAGATTGCTTAGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAGCTACACTCTGTGACCGTGGAAAGCTGCACAGATTGCTTAGCA  885

seq1  TCCTAAAACCTTTCCATATTTGTTGTGTGCATGCGTGTGTGTGTGTGTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAAACCTTTCCATATTTGTTGTGTGCATGCGTGTGTGTGTGTGTGT  935

seq1  GTGTGTGTGTGTGTGCGCGTGCGCGCGCGCGTGTGCTCCACAGCATATAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGCGCGTGCGCGCGCGCGTGTGCTCCACAGCATATAT  985

seq1  AGAGAGGTCAGAGGACAGCTTGCAAGAATTGGTTCTCTCCTTCTACCAAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGTCAGAGGACAGCTTGCAAGAATTGGTTCTCTCCTTCTACCAAG  1035

seq1  TGAATTC  1056
      |||||||
seq2  TGAATTC  1042