BAC Information

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BAC

Clone NameB6Ng01-061A01
Chromosome7 (Build37)10 (Build37)
Map Location 50,962,004 - 50,962,41073,054,086 - 73,054,794
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620, Zfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14
Downstream geneKlk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061A01.bB6Ng01-061A01.g
ACCDH881811DH881812
length448653
definitionDH881811|Mus musculus domesticus DNA, BAC clone: B6Ng01-061A01, 5' end.DH881812|Mus musculus domesticus DNA, BAC clone: B6Ng01-061A01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(50,962,004 - 50,962,410)(73,054,086 - 73,054,794)
sequence
gaattctttttttttctttttttttttaaaaagttggtatttttttcatt
tacttttccaatgccatcccaaaagtcccccattccctcaccctcactct
cctccaccccccccccctactctcactcttggccctggctttcccctgta
ctttggcatataaagtttgctagaccaatgggcctttctttccactgatg
gccaactaggccatcttctgatacatatgcagctagagacaccagctcca
agggttcctggttagttcatattgttgttccacctataggtttgcagacc
cctttagctccttgggtactttctctggctcctcccttgagggccctgtg
atccatccaatagctgactgtaaacatccacttctgtgattggtggcccc
ctcatagcctcttaacaaacagctatatcagggtcctttcatccaaaa
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagttcaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgactgtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctgttcaggaattttccccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgcactgtttcttacatacttagaa
aagaatgaaaggggtgttgtagatatggctcactggttaagagcactgac
tgctcttccagaggtcctgagttcaattcccatcaaccccatggtggctc
acaaccatctgtaatgggatctgatgccctcttcttgtgtgtctgaagac
agctagagtgtatctatatacataaaataaataaatttttgtcagagaga
gac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_50962004_50962410
seq2: B6Ng01-061A01.b_75_487 (reverse)

seq1  -TTTTGCTGAAAGGACCCAGATATAGCTCTCTCTTGTGAGACTATGCTGG  49
       ||| | ||||||||||| ||||||||| | | ||  ||| |||||  ||
seq2  TTTTGGATGAAAGGACCCTGATATAGCTGTTTGTTAAGAGGCTATGAGGG  50

seq1  GGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGATC  99
      |||| | ||| |||||||||||||| | ||||||||||||||||||||||
seq2  GGCC-ACCAATCACAGAAGTGGATGTTTACAGTCAGCTATTGGATGGATC  99

seq1  ACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGG  149
      ||||||||| ||| |||||||| |||||||||||||||||||||||||||
seq2  ACAGGGCCCTCAAGGGAGGAGCCAGAGAAAGTACCCAAGGAGCTAAAGGG  149

seq1  ATCTGCATCCCTATAGGTGGAACAACAATATGAACTAACCAGTACCCC--  197
       ||||||  ||||||||||||||||||||||||||||||||| | |||  
seq2  GTCTGCAAACCTATAGGTGGAACAACAATATGAACTAACCAGGAACCCTT  199

seq1  GGAGCTCTTGACTCTAGCTGCATATGTATCAAAACATGGCCTAGTTGGCC  247
      ||||||  || |||||||||||||||||||| || |||||||||||||||
seq2  GGAGCTGGTGTCTCTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCC  249

seq1  ATCACTGGAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCCCAGT  297
      |||| |||||||| ||||||||||| || ||||||||||||||||  |||
seq2  ATCAGTGGAAAGAAAGGCCCATTGGTCTAGCAAACTTTATATGCCAAAGT  299

seq1  ACAGGGGAATGCCAGGGCCAAAAAGTGGGAGT-----GGGTGGGTAGGGG  342
      ||||||||| ||||||||| || |||| ||||     ||| |||| | ||
seq2  ACAGGGGAAAGCCAGGGCC-AAGAGTGAGAGTAGGGGGGGGGGGTGGAGG  348

seq1  TGTGGGGGGGGGAGGGTATGGGGGACTTTTGGGATAGCATTGGAAATGTA  392
       | | | ||| ||||| |||||||||||||||||| |||||||||| |||
seq2  AGAGTGAGGGTGAGGGAATGGGGGACTTTTGGGATGGCATTGGAAAAGTA  398

seq1  AATGAGGAAAATACC  407
      |||||  ||||||||
seq2  AATGAAAAAAATACC  413

seq1: chr10_73054086_73054794
seq2: B6Ng01-061A01.g_65_717

seq1  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50

seq1  TTCTGAAGTTCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGTTCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC  100

seq1  CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT  150

seq1  TTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCA  200
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTATTGACTGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCA  200

seq1  TTAGGTCCCATTTGTCGATTCTCGATCTTACAGCACAAGCCATTGCTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTCCCATTTGTCGATTCTCGATCTTACAGCACAAGCCATTGCTGTT  250

seq1  CTGTTCAGGAATTTTCCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCAGGAATTTTCCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCAC  300

seq1  TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGA  350

seq1  TCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGC  400

seq1  ATTCTTCTACATGATAACAACCAGTTGCACTGTTTCTTACATACTTAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCTACATGATAACAACCAGTTGCACTGTTTCTTACATACTTAGAA  450

seq1  AAGAATGATGTGGGTGTTGTAGAGATGGCTCAGTGGTTAAGAGCACTGAC  500
      ||||||||   |||||||||||| |||||||| |||||||||||||||||
seq2  AAGAATGAAAGGGGTGTTGTAGATATGGCTCACTGGTTAAGAGCACTGAC  500

seq1  TGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCCCATGGTGGCTC  550
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGCTCTTCCAGAGGTCCTGAGTTCAATTCCCATCAACCCCATGGTGGCTC  550

seq1  ACAACCATCTGTAATGGGATCTGATGCCCTCTTCTTGTGTGTCTGAAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCATCTGTAATGGGATCTGATGCCCTCTTCTTGTGTGTCTGAAGAC  600

seq1  AGCTAGAGTGTACCCATATACATAAAATAAAGAAATTTTTGTCAAAGAGA  650
      |||||||||||| | |||||||||||||||| |||||||||||| |||||
seq2  AGCTAGAGTGTATCTATATACATAAAATAAATAAATTTTTGTCAGAGAGA  650

seq1  GA-GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  699
      ||                                                
seq2  GAC-----------------------------------------------  653

seq1  AGAGAGAGAC  709
                
seq2  ----------  653