BAC Information

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BAC

Clone NameB6Ng01-061C24
Chromosome10 (Build37)
Map Location 60,615,369 - 60,669,150
singlet/doubletdoublet
Overlap gene1700021K02Rik, Adamts14
Upstream geneChst3, LOC100039080, Psap, Cdh23, 4632428N05Rik, Slc29a3, Unc5b, Pcbd1, Sgpl1
Downstream genePrf1, EG237361, X99384, Nodal, Eif4ebp2, D830039M14Rik, Lrrc20, Npffr1, Ppa1, Sar1a, Tysnd1, Aifm2, H2afy2, LOC100039284, Col13a1, EG436164, EG432466, 2010107G23Rik, Neurog3, Tspan15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061C24.bB6Ng01-061C24.g
ACCDH881935DH881936
length316313
definitionDH881935|Mus musculus domesticus DNA, BAC clone: B6Ng01-061C24, 5' end.DH881936|Mus musculus domesticus DNA, BAC clone: B6Ng01-061C24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,615,369 - 60,615,690)(60,668,836 - 60,669,150)
sequence
acctcctaagtgctaggattaaaccgcaaacatcaccttctactccttgc
tcagattgggctctctctctctctctctctctctctctctctctctctct
ctttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgggagggtgtgggggggtctgagggggggggccgcgga
gaccctgctagaatggtgtatgtgtatgagagaaaagctgatggtatgca
gatctacatgagagaaatcacactgttattatatgagaataaaaaaagga
gccccacatatatgag
aatgctcagagttcacatggtggagggagagaatccactccttcagcttg
cccctgacttccacactcacactggggcatgtgtcccttccccagtcctg
ccccaagtaataagtgcaattaaaaaaaattaaaagagtaaaaataacca
ggcacaggggtacacaccacttgggaagtgggctacatgagtctttgtct
ttaaaagaagaagaggaggagagagaggaagaagaggagggagaggaaga
agagaaatcgccctctcccttcccctgtcttgggatgtagctcattttct
aaaatggttacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_60615369_60615690
seq2: B6Ng01-061C24.b_45_366

seq1  GAATTCACCTCCTAAGTGCTAGGATTAAA-GGCAAACATCACCTTCTACT  49
      |||||||||||||||||||||||||||||  |||||||||||||||||||
seq2  GAATTCACCTCCTAAGTGCTAGGATTAAACCGCAAACATCACCTTCTACT  50

seq1  CCTTGCTCAGATTGGGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTCAGATTGGGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  100

seq1  CTCTCTCTTTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTTTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  150

seq1  GTGTGTGTGTGTGTGTGTGCAAGGTTGTGGGGAGATCTGAGATTTGTGGC  199
      |||||||||||||||||||  ||| ||||||| | ||||||    | |||
seq2  GTGTGTGTGTGTGTGTGTGGGAGGGTGTGGGGGGGTCTGAGGGGGGGGGC  200

seq1  TTCTGAGACCCTGCTAGAAAG--GAATGTGGAAAAGTAAAGATAAGCTGA  247
        | ||||||||||||||| |  | ||||| |  ||   ||| |||||||
seq2  CGCGGAGACCCTGCTAGAATGGTGTATGTGTATGAG---AGAAAAGCTGA  247

seq1  TGGTAGGCAGATGAACAGGAGAGAAACCACACGGTTATAATATGGGATTC  297
      ||||| ||||||  ||| |||||||| ||||| ||||| ||||| || | 
seq2  TGGTATGCAGATCTACATGAGAGAAATCACACTGTTATTATATGAGAATA  297

seq1  CAAAAAGGAGCCCCACAGATATGAG  322
       |||||||||||||||| |||||||
seq2  AAAAAAGGAGCCCCACATATATGAG  322

seq1: chr10_60668836_60669150
seq2: B6Ng01-061C24.g_72_384 (reverse)

seq1  TGGTAACCATTCTACCAAATGAGCTACATCCCCAACCTCCTCTCTCTCTT  50
      ||||||||||| ||  ||||||||||||||||  |   |           
seq2  TGGTAACCATTTTAGAAAATGAGCTACATCCC--AAGACAGGGGAAGGGA  48

seq1  TTCTTCTCATTCTCTTCTTCCTCTCCCTCCTCTTCTTCCTCTCTCTCCTC  100
           |   |||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCGATTTCTCTTCTTCCTCTCCCTCCTCTTCTTCCTCTCTCTCCTC  98

seq1  CTCTTCTTCTTTTAAAGACAAAGACTCATGTAGCCCACTTCCCAAGTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTTCTTTTAAAGACAAAGACTCATGTAGCCCACTTCCCAAGTGGT  148

seq1  GTGTACCCCTGTGCCTGGTTATTTTTACTCTTTTAATTTTTTTTAATTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACCCCTGTGCCTGGTTATTTTTACTCTTTTAATTTTTTTTAATTGC  198

seq1  ACTTATTACTTGGGGCAGGACTGGGGAAGGGACACATGCCCCAGTGTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTACTTGGGGCAGGACTGGGGAAGGGACACATGCCCCAGTGTGAG  248

seq1  TGTGGAAGTCAGGGGCAAGCTGAAGGAGTGGATTCTCTCCCTCCACCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAGTCAGGGGCAAGCTGAAGGAGTGGATTCTCTCCCTCCACCATG  298

seq1  TGAACTCTGAGCATT  315
      |||||||||||||||
seq2  TGAACTCTGAGCATT  313