BAC Information

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BAC

Clone NameB6Ng01-061J22
Chromosome10 (Build37)
Map Location 83,734,762 - 83,901,492
singlet/doubletdoublet
Overlap geneLOC432482, Nuak1
Upstream geneSlc41a2, D10Wsu102e, LOC666748, Aldh1l2, A230046K03Rik, Appl2, 1500009L16Rik, LOC100041225, C230099D08Rik
Downstream geneCkap4, Tcp11l2, Polr3b, Rfx4, EG625690, Ric8b, Fhl4, AI597468, Mterfd3, Cry1, EG666974, Btbd11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061J22.bB6Ng01-061J22.g
ACCDH882244DH882245
length1,097926
definitionDH882244|Mus musculus domesticus DNA, BAC clone: B6Ng01-061J22, 5' end.DH882245|Mus musculus domesticus DNA, BAC clone: B6Ng01-061J22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,734,762 - 83,735,865)(83,900,561 - 83,901,492)
sequence
gaattcttgattgttgtttagaatgtctcctttggtgacaagttcttcat
tgcttttcctttattttgacagagcgagagaagcacaaatattgttttta
tgtaaaatctcaacgttttatgattgatgatgaggcctctggcctaacag
gtcaaggacaatgatctggctttgtagagcaagtggcttccagatacgaa
caaatcttctagatacagacattctgtacagttgagggtccttcagtatg
ttgcatcaacccaattaagttttatgggggaaccaaaagactaatattcc
catcctaggagaaaaggacatagttattccagataccctgggaccaacat
tccacagagactcccacagagcagccacagaagcaatggggacctgattc
atctttctggatcattcctcacatggatcttagaagcaaagtcaagcatt
ttaaaatggactctccaggggtctcagataattttttttaaaaagcctca
agaagctgatacagaaatatccactgatgaagcaatttcctctggaagga
tgcagaagtgaccatgtgtgtgcaatgagcaggaggagtcacatctgtgc
aggtaaagaacactgggcgtgtacaggagtgagcaaaagcacagactctg
gacttttgtgtagcaatatggagatcacattccaaaaccccaagcaaatg
cctaaaacactgacctagaaaaccatcgccctgacttccattagccactg
attgagtccactccacagcatctccatctcatctgaattaccaacatcac
tcctagtgcttcgtgctttacttaatgtaaaataagtagtacttcaacac
agcacttgggtgattgacctgtcaatcaagaaagccactaaatgaccgtt
aggtgcgccatagagattgtgtacatgcaagacagatgcatgggaggaag
ctggacagcacaaaatcccacatggtttttttttttttttagaaaggcat
gcaattaaataatgagctatttctttctggaatttttcatttgatgtttt
agaacacagctgaacttcagtaactgaaacacaagtatgctgatggt
gaattctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttggagag
attatctgcagatgaagagcctgagcagcacgctcattcatgcgtttctt
cccgaggtgacactccccaggctggacgttgaataagcggaaacttagtg
tagctcctttccctggttgtcttaatagctgatgaagaatcgtgctggta
agttggaaagcaggataatgaaaaacaggcgctgtctgaggtgcaggttg
aagatgtgagaaggtgaggggtcggagcagggagggcaggcctggaatct
gtggtggggaccctcacattctcacacctaagtgcttgtgagacagctca
gccaggcttggaatctttgtggcatatgcttggccgctgagctccattgt
ggcttccagtcaggcaggcgttcttctagctgtctgatccgcaggctggg
ttagacttgcattggtaggcaggcgcctgccttcctctttggtgggtgtc
tggaaacattctgccaggatttagcctcatggccactagggggcgcccag
agaacgacagaggctcatttctcctctgcaagaccagtcagtcagctgtt
attgtctggttcaccctccctcccattgtgctattaatttcagcgaaatc
tcttgtttattcaaaaaattatgtaaagattttgaaagctgtcagtagaa
tacaggcccaggaaactgagagttaccaaaaggcttatttctcctgggtt
tgttttctacttgagagctagtttgaaaaacggtacaaaaccctctatga
accctccctttttaacaattgaacctgaggtctggggcggggataaagat
ttctctgggggctgggatcttccttattaatgagctgttcaccgatgggc
gattgggttcaagtgaagatgagaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_83734762_83735865
seq2: B6Ng01-061J22.b_47_1143

seq1  GAATTCTTGATTGTTGTTTAGAATGTCTCATATGGTGACAAGTTCTTCAT  50
      ||||||||||||||||||||||||||||| | ||||||||||||||||||
seq2  GAATTCTTGATTGTTGTTTAGAATGTCTCCTTTGGTGACAAGTTCTTCAT  50

seq1  TGCTTTTCCTTTATTTTGACAGAGCGAGAGAAGCACAAATATTGTTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTCCTTTATTTTGACAGAGCGAGAGAAGCACAAATATTGTTTTTA  100

seq1  TGTAAAATCTCAACGTTTTATGATTGATGATGAGGCCTCTGGCCTAACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAATCTCAACGTTTTATGATTGATGATGAGGCCTCTGGCCTAACAG  150

seq1  GTCAAGGACAATGATCTGGCTTTGTAGAGCAAGTGGCTTCCAGATACGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGGACAATGATCTGGCTTTGTAGAGCAAGTGGCTTCCAGATACGAA  200

seq1  CAAATCTTCTAGATACAGACATTCTGTACAGTTGAGGGTCCTTCAGTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTTCTAGATACAGACATTCTGTACAGTTGAGGGTCCTTCAGTATG  250

seq1  TTGCATCAACCCAATTAAGTTTTATGGGGGAACCAAAAGACTAATATTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATCAACCCAATTAAGTTTTATGGGGGAACCAAAAGACTAATATTCC  300

seq1  CATCCTAGGAGAAAAGGACATAGTTATTCCAGATACCCTGGGACCAACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTAGGAGAAAAGGACATAGTTATTCCAGATACCCTGGGACCAACAT  350

seq1  TCCACAGAGACTCCCACAGAGCAGCCACAGAAGCAATGGGGACCTGATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGAGACTCCCACAGAGCAGCCACAGAAGCAATGGGGACCTGATTC  400

seq1  ATCTTTCTGGATCATTCCTCACATGGATCTTAGAAGCAAAGTCAAGCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCTGGATCATTCCTCACATGGATCTTAGAAGCAAAGTCAAGCATT  450

seq1  TTAAAATGGACTCTCCAGGGGTCTCAGATAATTTTTTTTAAAAAGCCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATGGACTCTCCAGGGGTCTCAGATAATTTTTTTTAAAAAGCCTCA  500

seq1  AGAAGCTGATACAGAAATATCCACTGATGAAGCAATTTCCTCTGGAAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTGATACAGAAATATCCACTGATGAAGCAATTTCCTCTGGAAGGA  550

seq1  TGCAGAAGTGACCATGTGTGTGCAATGAGCAGGAGGAGTCACATCTGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAGTGACCATGTGTGTGCAATGAGCAGGAGGAGTCACATCTGTGC  600

seq1  AGGTAAAGAACACTGGGCGTGTACAGGAGTGAGCAAAAGCACAGACTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAAGAACACTGGGCGTGTACAGGAGTGAGCAAAAGCACAGACTCTG  650

seq1  GACTTTTGTGTAGCAATATGGAGATCACATTCCAAAACCCCAAGCAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTGTGTAGCAATATGGAGATCACATTCCAAAACCCCAAGCAAATG  700

seq1  CCTAAAACACTGACCTAGAAAACCATCGCCCTGACTTCCATTAGCCACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAACACTGACCTAGAAAACCATCGCCCTGACTTCCATTAGCCACTG  750

seq1  ATTGAGTCCACTCCACAGCATCTCCATCTCATCTGAATTACCAACATCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTCCACTCCACAGCATCTCCATCTCATCTGAATTACCAACATCAC  800

seq1  TCCTAGTGCTTCGTGCTTTACTTAATGTAAAATAAGTAGTACTTCAACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTGCTTCGTGCTTTACTTAATGTAAAATAAGTAGTACTTCAACAC  850

seq1  AGCACTTGGGTGATTGACCTGTCAATCAAGAAAGCCACTAAATGACCGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTGGGTGATTGACCTGTCAATCAAGAAAGCCACTAAATGACCGTT  900

seq1  AGGTGCGCCATAGAGATTGTGTACATGCAAGACAGATGCATGGGAGGAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCGCCATAGAGATTGTGTACATGCAAGACAGATGCATGGGAGGAAG  950

seq1  CTGGACAGCACAAAATCCCACCATGGTTTTTTTTTTTTTTTCAGAAAGGC  1000
      |||||||||||||||||||| |||||||||||||||||||| ||||||||
seq2  CTGGACAGCACAAAATCCCA-CATGGTTTTTTTTTTTTTTT-AGAAAGGC  998

seq1  ATGCAATTTAAATAATGAGCTATTTCTTTCTGGAATTTTCCATTTGATGT  1050
      |||||| |||||||||||||||||||||||||||||||| ||||||||| 
seq2  ATGCAA-TTAAATAATGAGCTATTTCTTTCTGGAATTTTTCATTTGATG-  1046

seq1  TTTTAGACCACAGCTG-ACTCCAGGTAACTGAAACAGTAAGTAATGCTGG  1099
      ||||||| |||||||| ||| || ||||||||||||  |||| ||||| |
seq2  TTTTAGAACACAGCTGAACTTCA-GTAACTGAAACA-CAAGT-ATGCT-G  1092

seq1  ATGGT  1104
      |||||
seq2  ATGGT  1097

seq1: chr10_83900561_83901492
seq2: B6Ng01-061J22.g_70_995 (reverse)

seq1  ATTCTCATTCTTCACTTG-AGCCTGTCTGCCATCTGTGAACAGCTCACTC  49
      ||||||| |||||||||| | ||  ||  ||||| |||||||||||| | 
seq2  ATTCTCA-TCTTCACTTGAACCCAATCGCCCATCGGTGAACAGCTCA-TT  48

seq1  ATTGAGGAGGATCCAGGCCCCAGGAGGACTTCTTGCCCCGCCCCCAGACC  99
      | | |||| |||||  |||||  ||| | |  ||  |||  |||||||||
seq2  AATAAGGAAGATCCCAGCCCCCAGAGAAATCTTTATCCCCGCCCCAGACC  98

seq1  TCAGGTTCCAATCTGTTAAAAAGGGAGGGTTCACTAGAGGGTCTTGCTAA  149
      ||||||| |||| |||||||||||||||||||| |||||||| ||| || 
seq2  TCAGGTT-CAAT-TGTTAAAAAGGGAGGGTTCA-TAGAGGGTTTTG-TAC  144

seq1  CGTTTTTCAACTTAGCTCTCAAGTAGAAAACAAACCCATGGAGAAGTGAA  199
      ||||||||||  |||||||||||||||||||||||||| |||||| | ||
seq2  CGTTTTTCAAACTAGCTCTCAAGTAGAAAACAAACCCA-GGAGAAAT-AA  192

seq1  GCCGTTTGGTAACTCTCAG-TTCCTGGGCCTGTATTCTACTGACAGC-TT  247
      ||| ||||||||||||||| ||||||||||||||||||||||||||| ||
seq2  GCCTTTTGGTAACTCTCAGTTTCCTGGGCCTGTATTCTACTGACAGCTTT  242

seq1  CAAAATCTTTACATAATTTTTTGAATAAAACAAGAGATTTCGCTGAAATT  297
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CAAAATCTTTACATAATTTTTTGAAT-AAACAAGAGATTTCGCTGAAATT  291

seq1  AATAGCACAATGGGAGGGAGGGTGAACCAGACAATAACAGCTGACTGACT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCACAATGGGAGGGAGGGTGAACCAGACAATAACAGCTGACTGACT  341

seq1  GGTCTTGCAGAGGAGAAATGAGCCTCTGTCGTTCTCTGGGCGCCCCCTAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGCAGAGGAGAAATGAGCCTCTGTCGTTCTCTGGGCGCCCCCTAG  391

seq1  TGGCCATGAGGCTAAATCCTGGCAGAATGTTTCCAGACACCCACCAAAGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATGAGGCTAAATCCTGGCAGAATGTTTCCAGACACCCACCAAAGA  441

seq1  GGAAGGCAGGCGCCTGCCTACCAATGCAAGTCTAACCCAGCCTGCGGATC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCAGGCGCCTGCCTACCAATGCAAGTCTAACCCAGCCTGCGGATC  491

seq1  AGACAGCTAGAAGAACGCCTGCCTGACTGGAAGCCACAATGGAGCTCAGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCTAGAAGAACGCCTGCCTGACTGGAAGCCACAATGGAGCTCAGC  541

seq1  GGCCAAGCATATGCCACAAAGATTCCAAGCCTGGCTGAGCTGTCTCACAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAGCATATGCCACAAAGATTCCAAGCCTGGCTGAGCTGTCTCACAA  591

seq1  GCACTTAGGTGTGAGAATGTGAGGGTCCCCACCACAGATTCCAGGCCTGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTAGGTGTGAGAATGTGAGGGTCCCCACCACAGATTCCAGGCCTGC  641

seq1  CCTCCCTGCTCCGACCCCTCACCTTCTCACATCTTCAACCTGCACCTCAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTGCTCCGACCCCTCACCTTCTCACATCTTCAACCTGCACCTCAG  691

seq1  ACAGCGCCTGTTTTTCATTATCCTGCTTTCCAACTTACCAGCACGATTCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCGCCTGTTTTTCATTATCCTGCTTTCCAACTTACCAGCACGATTCT  741

seq1  TCATCAGCTATTAAGACAACCAGGGAAAGGAGCTACACTAAGTTTCCGCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGCTATTAAGACAACCAGGGAAAGGAGCTACACTAAGTTTCCGCT  791

seq1  TATTCAACGTCCAGCCTGGGGAGTGTCACCTCGGGAAGAAACGCATGAAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAACGTCCAGCCTGGGGAGTGTCACCTCGGGAAGAAACGCATGAAT  841

seq1  GAGCGTGCTGCTCAGGCTCTTCATCTGCAGATAATCTCTCCAACACACAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGTGCTGCTCAGGCTCTTCATCTGCAGATAATCTCTCCAACACACAC  891

seq1  ACACACACACACACACACACACACACACAGAATTC  932
      |||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACAGAATTC  926