BAC Information

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BAC

Clone NameB6Ng01-062B24
Chromosome4 (Build37)10 (Build37)
Map Location 124,409,394 - 124,410,51862,379,471 - 62,379,875
singlet/doubletsingletsinglet
Overlap geneSf3a3
Upstream gene6330407G11Rik, Rhbdl2, LOC667064, Mycbp, Rragc, 1700057H15Rik, LOC100039332, Pou3f1, Utp11l, Fhl3, LOC664991
Downstream geneInpp5b, LOC100039433, Mtf1, Yrdc, Gm50, Epha10, Cdca8, 9930104L06Rik, Rspo1, Gnl2, Dnali1, Snip1, 2310005N01Rik, Zc3h12a, LOC100039298, Grik3, Ftl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062B24.bB6Ng01-062B24.g
ACCDH882616DH882617
length1,115932
definitionDH882616|Mus musculus domesticus DNA, BAC clone: B6Ng01-062B24, 5' end.DH882617|Mus musculus domesticus DNA, BAC clone: B6Ng01-062B24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(124,409,394 - 124,410,518)(62,379,471 - 62,379,875)
sequence
gaattcagtgtggagctaacagagccataccttttcaggaagaatatgaa
gactccagtggaaatgttgtgaacaagaagacatacgaggatctgaaaag
acaagggctgctctagtgctcggttccctgagaagcctgagaaaagcttc
cccaaccaaatgttcttaaagactttttgctatgtagtatctaccttgta
gaaaccttgcagattgcagagttgagatgtgttttatctttgttttatat
taaaaagatctgtgggaaaataaagccagcccttgttttggatgtgttgt
ttctgaaacccaagtttatgaattttttgtttttcttttttgagacaggg
tttctctgtatagccctggctgtcctggaactcactttgtagatcaggtt
ggactcaaactcagaaatccacctgcctctgcctcccaagtgctgggatt
aaaggtgtgtgccaccaccacccacccagcctaggtttatgaagtaactt
cgtcctttttgttttgtttttttttaatatttaatgtatgtgagtacact
gttgctgtcttcatacacaccagaagagggcatctgatcccattactgat
ggttgtgagccaccttgtggttgctgggatttgaactagacctatggaag
atcagtcaatggtcttatccactgagccatctctccaggccccatccttt
tgttcttaatgccttctagccttgttctcaccagcttccacagtggctta
gatttaggaggtagttattactgcctaaatatgattctgtatgtgtctca
ctgacagcctaggctaccaactcccatctatcctacctcagcctcctgtg
tgctgagattacagatctgtgctgccacattgggcatgtgtcaagtaatt
gagacctaacttttctccccgtcactgccacttcccaatgagcatcatgc
cagcatgaactctgctcccagttgagtgccagccattggtgttgcataca
gagcaaaaggaggtgagctaagcctgaaggcttaaaatggcttcaggttt
gcctgtttattgcataaagaaataagctatatagttgccttagtccggca
ctggggacgaggcag
gaattcaggtctttaggattggcagtagaagcttttattatcctgagagc
cctgatctttcttttttttttttttttaaagatttatttattcattatat
gtaagtacactgtagctgtcttcagacacaccagaagagggcgtcagatc
tcgttacggatggttgtgagccaccatgtggttgctgggatttgaactcc
agaccttcttacccactgagccatctcaccagccctgatctttcattttt
aacattatgtaattgatagttgcaacatagtatagaaaaagaatccaggt
gctcctaactgaccatctctccagtctgtatagaccggtggttctcaact
ttcctaatgttgagaccttttaatatagttcctcatgttgtggtgacccc
taaccataaagttatttcattcatacttcataactgtaatattgttactt
tttttaaaaaattatttatttatttgtttgtttgtttatttatttattta
tttatttatttattatatgtaagtacactgtagctgtcttcagacactcc
agaagagggcatcagatcttgttatggacagttgtgggccaccatgtggt
tgctgggatttgaactcaggacctttggaagagcagtcagtgcgcttaac
cactgagccatctctctaacccccaatattgttactgttatgaatcataa
tgtaaatatctgatatgcgacttcaaaaggagttatagacccacaggttg
agaaccactgttatatacagtaattaaaaatttttttttatctcatatgc
attggtgttttgcctgcatgtatgtctgtgtgagagtgtcagatcctctg
gaactagagttacagacaggtgtgagctgccatgtgggttgctgggaaaa
gtgtgtcctctggaaattataagtgctcttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_124409394_124410518
seq2: B6Ng01-062B24.b_47_1161

seq1  GAATTCAGTGTGGAGCTAACAGAGCCATACCTTTTCAGGAAGAATATGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTGGAGCTAACAGAGCCATACCTTTTCAGGAAGAATATGAA  50

seq1  GACTCCAGTGGAAATGTTGTGAACAAGAAGACATACGAGGATCTGAAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCAGTGGAAATGTTGTGAACAAGAAGACATACGAGGATCTGAAAAG  100

seq1  ACAAGGGCTGCTCTAGTGCTCGGTTCCCTGAGAAGCCTGAGAAAAGCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGGCTGCTCTAGTGCTCGGTTCCCTGAGAAGCCTGAGAAAAGCTTC  150

seq1  CCCAACCAAATGTTCTTAAAGACTTTTTGCTATGTAGTATCTACCTTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACCAAATGTTCTTAAAGACTTTTTGCTATGTAGTATCTACCTTGTA  200

seq1  GAAACCTTGCAGATTGCAGAGTTGAGATGTGTTTTATCTTTGTTTTATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTTGCAGATTGCAGAGTTGAGATGTGTTTTATCTTTGTTTTATAT  250

seq1  TAAAAAGATCTGTGGGAAAATAAAGCCAGCCCTTGTTTTGGATGTGTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGATCTGTGGGAAAATAAAGCCAGCCCTTGTTTTGGATGTGTTGT  300

seq1  TTCTGAAACCCAAGTTTATGAATTTTTTGTTTTTCTTTTTTGAGACAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAACCCAAGTTTATGAATTTTTTGTTTTTCTTTTTTGAGACAGGG  350

seq1  TTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGATCAGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGATCAGGTT  400

seq1  GGACTCAAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCAAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATT  450

seq1  AAAGGTGTGTGCCACCACCACCCACCCAGCCTAGGTTTATGAAGTAACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGTGTGCCACCACCACCCACCCAGCCTAGGTTTATGAAGTAACTT  500

seq1  CGTCCTTTTTGTTTTGTTTTTTTTTAATATTTAATGTATGTGAGTACACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCTTTTTGTTTTGTTTTTTTTTAATATTTAATGTATGTGAGTACACT  550

seq1  GTTGCTGTCTTCATACACACCAGAAGAGGGCATCTGATCCCATTACTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGTCTTCATACACACCAGAAGAGGGCATCTGATCCCATTACTGAT  600

seq1  GGTTGTGAGCCACCTTGTGGTTGCTGGGATTTGAACTAGACCTATGGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGAGCCACCTTGTGGTTGCTGGGATTTGAACTAGACCTATGGAAG  650

seq1  ATCAGTCAATGGTCTTATCCACTGAGCCATCTCTCCAGGCCCCATCCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTCAATGGTCTTATCCACTGAGCCATCTCTCCAGGCCCCATCCTTT  700

seq1  TGTTCTTAATGCCTTCTAGCCTTGTTCTCACCAGCTTCCACAGTGGCTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTAATGCCTTCTAGCCTTGTTCTCACCAGCTTCCACAGTGGCTTA  750

seq1  GATTTAGGAGGTAGTTATTACTGCCTAAATATGATTCTGTATGTGTCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAGGAGGTAGTTATTACTGCCTAAATATGATTCTGTATGTGTCTCA  800

seq1  CTGACAGCCTAGGCTACCAACTCCCATCTATCCTACCTCAGCCTCCTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGCCTAGGCTACCAACTCCCATCTATCCTACCTCAGCCTCCTGTG  850

seq1  TGCTGAGATTACAGATCTGTGCTGCCACATTGGGCATGTGTCAAGTAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGATTACAGATCTGTGCTGCCACATTGGGCATGTGTCAAGTAATT  900

seq1  GAGACCTAACTTTTCTCCCCGTCACTGCCACTTCCCAAATGAGCATCATG  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAGACCTAACTTTTCTCCCCGTCACTGCCACTTCCC-AATGAGCATCATG  949

seq1  CCAGCATGAACTCTGCCCCCAGTTGAGTGCCAGCCATTGGTG-TGCATAC  999
      |||||||||||||||| ||||||||||||||||||||||||| |||||||
seq2  CCAGCATGAACTCTGCTCCCAGTTGAGTGCCAGCCATTGGTGTTGCATAC  999

seq1  AAGAGCAAACAGGAGGTTGAGCTAGGCCTGAAGGCTTAAAATGGCTTCAA  1049
       |||||||| |||||| ||||||| ||||||||||||||||||||||| |
seq2  -AGAGCAAA-AGGAGG-TGAGCTAAGCCTGAAGGCTTAAAATGGCTTC-A  1045

seq1  GGTTTGCCTGTTTTATTTGCATAAAGAAATTAGCTATATAGTTGGCCTTA  1099
      |||||||||||||   |||||||||||||| |||||||||||| ||||||
seq2  GGTTTGCCTGTTT--ATTGCATAAAGAAATAAGCTATATAGTT-GCCTTA  1092

seq1  GTCCCAGCACCTGGGGACAGAGGCAG  1125
      || || ||| |||||||| |||||||
seq2  GT-CCGGCA-CTGGGGAC-GAGGCAG  1115

seq1: chr10_62379471_62379875
seq2: B6Ng01-062B24.g_219_729 (reverse)

seq1  GAGATGGCTCAGTGGGTAAGAGCACCCGACTGTTCTTCCGAAGGTCCAGA  50
      ||||||||||||||| |||| ||| | ||||| |||||| ||||||| ||
seq2  GAGATGGCTCAGTGGTTAAGCGCA-CTGACTGCTCTTCCAAAGGTCCTGA  49

seq1  GTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACAAGAT  100
      |||||||||||||||||||||||||||| ||||||  ||  |||||||||
seq2  GTTCAAATCCCAGCAACCACATGGTGGCCCACAACTGTCCATAACAAGAT  99

seq1  CTGACGCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATA  150
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATA  149

seq1  TAATAAATAGATAAATCTTTAAA-AAATA-----------AAATA---AA  185
      ||||||||| ||||||   |||| |||||           |||||   ||
seq2  TAATAAATAAATAAATAAATAAATAAATAAACAAACAAACAAATAAATAA  199

seq1  ATAA---------------------AATACAGGCTGGAGAGATG------  208
      ||||                     | |||||    ||   |||      
seq2  ATAATTTTTTAAAAAAAGTAACAATATTACAGTTATGAAGTATGAATGAA  249

seq1  ----------GCTCAGTGGTACTTACA-----------TATAATAAATAA  237
                | | || |||    |||           |||| |||| | 
seq2  ATAACTTTATGGTTAGGGGTCACCACAACATGAGGAACTATATTAAA-AG  298

seq1  GTATTA----TATGTAAGT--------------------ACACT------  257
      || | |    || | ||||                    | |||      
seq2  GTCTCAACATTAGGAAAGTTGAGAACCACCGGTCTATACAGACTGGAGAG  348

seq1  ------------GAGTAC---------TTATATATA-------------A  273
                  ||| ||         || | ||||             |
seq2  ATGGTCAGTTAGGAGCACCTGGATTCTTTTTCTATACTATGTTGCAACTA  398

seq1  TAAATAAATAAATCTTTAAA---AAATATACAGGGGGCTGGAGAGATGGC  320
      | ||| |   ||| || |||   ||| || ||  ||||||| ||||||||
seq2  TCAATTACATAATGTTAAAAATGAAAGAT-CA--GGGCTGGTGAGATGGC  445

seq1  TCAGTGGTTAAGAGCACTGACCACTCTTCTAGATGTTGTGAGTTCAAATC  370
      ||||||| |||||                   | ||   |||||||||||
seq2  TCAGTGGGTAAGA-------------------AGGTCTGGAGTTCAAATC  476

seq1  CTAGCAACCACATGGTGGCTCACAGCCATCTGTAA  405
      | |||||||||||||||||||||| ||||| ||||
seq2  CCAGCAACCACATGGTGGCTCACAACCATCCGTAA  511