BAC Information

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BAC

Clone NameB6Ng01-062I06
Chromosome10 (Build37)
Map Location 116,995,800 - 116,996,852
singlet/doubletsinglet
Overlap genenone
Upstream geneCnot2, LOC668080, EG668091, Gm239, Rab3ip, D630029K05Rik, LOC544741, Best3, Lrrc10, Cct2, Frs2, Yeats4, 9530003J23Rik, Lyzs, Lyz, Cpsf6, LOC668146
Downstream geneLOC668149, Kifc5c, Cpm, Mdm2, Slc35e3, Nup107, Rap1b, Mdm1, Il22, LOC672934, LOC668180, LOC668186, LOC668187, LOC668191, EG668193, Iltifb, LOC668198, EG668203, EG668205, EG668209, EG668213, LOC668216, Ifng
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062I06.bB6Ng01-062I06.g
ACCDH882887DH882888
length1,2541,048
definitionDH882887|Mus musculus domesticus DNA, BAC clone: B6Ng01-062I06, 5' end.DH882888|Mus musculus domesticus DNA, BAC clone: B6Ng01-062I06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaccatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggtgagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccacttactccctacctcttcaacatag
tacttgaagtcctagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcacttttgcagatgatatg
atagtatatataagtgaccctaaaaattccaccagagaactcctaaacct
gataaacagcttcggtgaagtagctggatataaaattaactcaaacaagt
caatggcctttctctacacaaagaataaacaggctgagaaagaaattaga
gaaacaacacccttctcaatagtcacaaatagtataaaatatcttggcgt
gactctaactaaggaagtgaaagatctgtatgataaaaacttcaagtctc
taaaaaaagaaattaaagaagatctcagaagatggaaagatctcccatgc
tcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaagc
aatctacagattcaatgcaatccccatcaaaattccaactcaattcttca
acaaattagaaagagcaatctgcaaattcatctggaataacaaaaaacct
aggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcac
catgcctgacctaaagctttactatagagcaattgtgataaaaactgcat
ggtactggtatagtgacagacaagtagaccaatggaatagaattgaagac
ccagaaatgaacccacacacctatggtcacttgatcttcgacaagggagc
aaaaaccatccagtggaagaagacagcattttcacaattggtgctggcac
aactggttgttatcatgtagagatgcgaatgatccatacctatctccttg
tactaaggtcaatctagtggatcaggacttcacataaaaccagagaaact
gaaacttatgaggagaaagtgggggaaagcttgaagaaatgggtacagcg
gaaattctgaatagaaagcatgcttggctgtagatcggaattgacaaatg
gactattgaattcagcttcgcaagccaagaacctgtcaataagacaaaac
ctcacgatgaagattacatctaatgatgggcactaatccacatataagac
tcag
gaattcagaatccgtttgtttgtttgttttttgtttttcgagacagggtt
tctctgtatagccctggctgtcctggaactcactctgtagaccaggctgg
cctcgaactcagaaatccacctgcctctgcctcccgagtgctgggattaa
aggcatgcgccaccacgcagaatccttagctaatcctctctgaccctgag
agtgtgactcgactcagagacagctagctcctgcttctcccaacccatga
ttaaactctttaaaagaaaataaagttacttgattagaatgcttgcttca
ttggtacgaagccgtgtgggtagcagagacctcgtcacaaaaacaaaact
ctggaacgacgtccgttacgggagcacgtgcgcctttctggctcttcctt
tccctccaccattcgtttctctgtttttaaggcttttgctctttcgttct
tcacgggagcacatgggtcccactgagaaagaaactattctgtctcctgg
tcaccgctcccataaataaaggtatgttttcagtcttactccatgtaagg
aaagttgggagagggacctgaagaaagtaatttagaatagcccaaagtaa
acactcatcccacaaagctcccagagatgggtcccgaagagatcggcaca
actgaagcacagaaagaggcttccaccgatggagtaaaaggtaggcacga
ggtctgtgctgactgcagagaggagcggttggcagaggtgagtaggggct
cacccttggatgcccacaccctctgggctatgtcacccgggccaccgccc
ttggtaggtgaagcacagctggtgtaatcatgtgtgccaagccaaactaa
tgacaagtcgcatcagacatctgagaaataattaactgctcgctcttctt
ttttttttttttcagcccacaattaaacaagtgcaggtgtaattattcgt
gaatgcaatttttccggccaacaaatacttgtggctaaagaactgcctgc
atgtgaaaggaggtaggtgtattggacccctttataagtccgtgctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_116995800_116996852
seq2: B6Ng01-062I06.g_68_1115

seq1  GAATTCAGAATCCGTTTGTTTGTTTGTTTTTTGTTTTTCGAGACAGGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAATCCGTTTGTTTGTTTGTTTTTTGTTTTTCGAGACAGGGTT  50

seq1  TCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGG  100

seq1  CCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAA  150

seq1  AGGCATGCGCCACCACGCAGAATCCTTAGCTAATCCTCTCTGACCCTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGCGCCACCACGCAGAATCCTTAGCTAATCCTCTCTGACCCTGAG  200

seq1  AGTGTGACTCGACTCAGAGACAGCTAGCTCCTGCTTCTCCCAACCCATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGACTCGACTCAGAGACAGCTAGCTCCTGCTTCTCCCAACCCATGA  250

seq1  TTAAACTCTTTAAAAGAAAATAAAGTTACTTGATTAGAATGCTTGCTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTCTTTAAAAGAAAATAAAGTTACTTGATTAGAATGCTTGCTTCA  300

seq1  TTGGTACGAAGCCGTGTGGGTAGCAGAGACCTCGTCACAAAAACAAAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTACGAAGCCGTGTGGGTAGCAGAGACCTCGTCACAAAAACAAAACT  350

seq1  CTGGAACGACGTCCGTTACGGGAGCACGTGCGCCTTTCTGGCTCTTCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACGACGTCCGTTACGGGAGCACGTGCGCCTTTCTGGCTCTTCCTT  400

seq1  TCCCTCCACCATTCGTTTCTCTGTTTTTAAGGCTTTTGCTCTTTCGTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCACCATTCGTTTCTCTGTTTTTAAGGCTTTTGCTCTTTCGTTCT  450

seq1  TCACGGGAGCACATGGGTCCCACTGAGAAAGAAACTATTCTGTCTCCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGGGAGCACATGGGTCCCACTGAGAAAGAAACTATTCTGTCTCCTGG  500

seq1  TCACCGCTCCCATAAATAAAGGTATGTTTTCAGTCTTACTCCATGTAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCGCTCCCATAAATAAAGGTATGTTTTCAGTCTTACTCCATGTAAGG  550

seq1  AAAGTTGGGAGAGGGACCTGAAGAAAGTAATTTAGAATAGCCCAAAGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGGGAGAGGGACCTGAAGAAAGTAATTTAGAATAGCCCAAAGTAA  600

seq1  ACACTCATCCCACAAAGCTCCCAGAGATGGGTCCCGAAGAGATCGGCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCATCCCACAAAGCTCCCAGAGATGGGTCCCGAAGAGATCGGCACA  650

seq1  ACTGAAGCACAGAAAGAGGCTTCCACCGATGGAGTAAAAGGTAGGCACGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGCACAGAAAGAGGCTTCCACCGATGGAGTAAAAGGTAGGCACGA  700

seq1  GGTCTGTGCTGACTGCAGAGAGGAGCGGTTGGCAGAGGTGAGTAGGGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGTGCTGACTGCAGAGAGGAGCGGTTGGCAGAGGTGAGTAGGGGCT  750

seq1  CACCCTTGGATGCCCACACCCTCTGGGCTATGTCACCCGGGCCACCGCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTGGATGCCCACACCCTCTGGGCTATGTCACCCGGGCCACCGCCC  800

seq1  TTGGTAGGTGAAGCACAGCTGGTGTAATCATGTGTGCCAAGCCAAACTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAGGTGAAGCACAGCTGGTGTAATCATGTGTGCCAAGCCAAACTAA  850

seq1  TGACAAGTCGCATCAGACATCTGAGAAATAATTAACTGCTCGCTCTTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGTCGCATCAGACATCTGAGAAATAATTAACTGCTCGCTCTTCTT  900

seq1  TTTTTTTTTTTTCAGCCCACAATTAAACAAGTGCAGGTGTAATTATTCGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTCAGCCCACAATTAAACAAGTGCAGGTGTAATTATTCGT  950

seq1  GAATGCAATTTTTTCCGGCAACAAATACTTGTGGCTAAAGAACTGCCTGC  1000
      ||||||||||||| | | ||||||||||||||||||||||||||||||||
seq2  GAATGCAATTTTTCCGGCCAACAAATACTTGTGGCTAAAGAACTGCCTGC  1000

seq1  ATTGTGAAAGGGAGGTAGGTGTAATTGGACCCCCTTTAATAAGTCGGTGC  1050
      | ||||||| |||||||||||| ||||||||||  || ||||||| ||||
seq2  A-TGTGAAA-GGAGGTAGGTGT-ATTGGACCCC--TTTATAAGTCCGTGC  1045

seq1  TTA  1053
      |||
seq2  TTA  1048