BAC Information

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BAC

Clone NameB6Ng01-062K04
Chromosome10 (Build37)3 (Build37)
Map Location 104,053,903 - 104,054,36344,162,360 - 44,163,500
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062K04.bB6Ng01-062K04.g
ACCDH882971DH882972
length9411,121
definitionDH882971|Mus musculus domesticus DNA, BAC clone: B6Ng01-062K04, 5' end.DH882972|Mus musculus domesticus DNA, BAC clone: B6Ng01-062K04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,903 - 104,054,363)(44,162,360 - 44,163,500)
sequence
gaattctcacctgaggaacaccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaattttgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaatgactctggaaatccgtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgttccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatccttagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aaggatgttagtaagattcttatgtttgccttttgccacttggtaatctc
tggagttagttgttatagttttctctggttcgagattgttcctttagtga
ttctgttagtctctatcagcagacctgggagactagctctctcctctgag
tttcagtggtcagagcactctctgcaggcaaactctcctct
gaattcactgtgtgattcccaagctgttctttacctgaagcaatagccca
gccttgacagtagcagcaggaaaatctccaggaactgctctaagaatctg
gagaggggcagagcccaaggcttctgttggagcccagctgtggcttccct
cagtagcctgccacaggagttactgccagtgctttgtgtgtcttgccatt
ctttccagtagttttataactgtgctcaacattcctattacaaacttctt
tttgaggatttgtataaagtcagtacgtcaactgtttgtgtaaaatgatt
ccatcattcttaattcatacaccaatgcaaatttctcctacaagtcttga
cagtgcctttattaccaatgatgtttctttttaaacgcaatttccccatt
catatggtagttttaattgtgctttatgctgtacttttgattttaggttt
tctaaaaagacacgattttaacatttctctctcttttttttttttgcttc
ttcatgatttatctcaattgaatagatagaatattttataatgttagtgt
ggctggaatcagttgcaactaaaaaataagtgtctgttctttttcaggaa
agaataaattcaagtggcaataccaagtccaatccctacttgaaccacac
tttccataattgttcctgtcatttaccctgtttaatctaagtgtgatggt
tgtctctctcccctttcccacatttcctgttctttctttatctcaattcc
tcttcttttctttctcatcttttgttctattcttctctgcctttctcggc
tactgccctataccttctccttatcatcctccacatggccatcatcctat
tccgtctgctccattaccaccttctctttttcttcctaattaattcacaa
aaagcattcagtacagacatgaaagaacttcctaccatagtcacgatcaa
cttatatagctacattatttcatactggatatctttattttattgttctg
ctaagaggaattgaccatcactgatagggcttgaatcttcatataattta
tagactatctccctgtaaatggaaattctctgatgcttaaattcgtctgt
agacctcaatgttattctgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053903_104054363
seq2: B6Ng01-062K04.b_48_518 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          |||||||||||| |||||||||||||||||||
seq2  TTTAATAGCTGAGTAGTACTCCATTGTGTAGATGTACCACATTTTCTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || ||||||||||||||||||||||||||||||||||| | |||||||||
seq2  TCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGTTTCTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      |||||||||||||||||||| |||||||| ||||||||||||||||| ||
seq2  ATAAATAAGGCTGCTATGAACATAGTGGAACATGTGTCCTTCTTACCAGT  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGGGGCATCTTCTGGATATATGCCCAGGAGAGGTATTGCTGGATCCTCCG  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTAGTACTATGTCCAATTTTCTGAGGAACCGCCAGACGGATTTCCAGAGT  250

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  300

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  350

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      |||||||||||||||||||||||||||   ||||||||||||||||||||
seq2  TTCTGACTGGTGTGAGGTGGAATCTCAAAATTGTTTTGATTTGCATTTCC  400

seq1  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  450

seq1  GTATTCCTCAGGTGAGAATTC  461
      || ||||||||||||||||||
seq2  GTGTTCCTCAGGTGAGAATTC  471

seq1: chr3_44162360_44163500
seq2: B6Ng01-062K04.g_68_1188

seq1  GAATTCACTGTGTGATTCCCAAGCTGTTCTTTACCTGAAGCAATAGCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTGTGATTCCCAAGCTGTTCTTTACCTGAAGCAATAGCCCA  50

seq1  GCCTTGACAGTAGCAGCAGGAAAATCTCCAGGAACTGCTCTAAGAATCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGACAGTAGCAGCAGGAAAATCTCCAGGAACTGCTCTAAGAATCTG  100

seq1  GAGAGGGGCAGAGCCCAAGGCTTCTGTTGGAGCCCAGCTGTGGCTTCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGGCAGAGCCCAAGGCTTCTGTTGGAGCCCAGCTGTGGCTTCCCT  150

seq1  CAGTAGCCTGCCACAGGAGTTACTGCCAGTGCTTTGTGTGTCTTGCCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGCCTGCCACAGGAGTTACTGCCAGTGCTTTGTGTGTCTTGCCATT  200

seq1  CTTTCCAGTAGTTTTATAACTGTGCTCAACATTCCTATTACAAACTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAGTAGTTTTATAACTGTGCTCAACATTCCTATTACAAACTTCTT  250

seq1  TTTGAGGATTTGTATAAAGTCAGTACGTCAACTGTTTGTGTAAAATGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGATTTGTATAAAGTCAGTACGTCAACTGTTTGTGTAAAATGATT  300

seq1  CCATCATTCTTAATTCATACACCAATGCAAATTTCTCCTACAAGTCTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATTCTTAATTCATACACCAATGCAAATTTCTCCTACAAGTCTTGA  350

seq1  CAGTGCCTTTATTACCAATGATGTTTCTTTTTAAACGCAATTTCCCCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCCTTTATTACCAATGATGTTTCTTTTTAAACGCAATTTCCCCATT  400

seq1  CATATGGTAGTTTTAATTGTGCTTTATGCTGTACTTTTGATTTTAGGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGGTAGTTTTAATTGTGCTTTATGCTGTACTTTTGATTTTAGGTTT  450

seq1  TCTAAAAAGACACGATTTTAACATTTCTCTCTCTTTTTTTTTTTTGCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAAGACACGATTTTAACATTTCTCTCTCTTTTTTTTTTTTGCTTC  500

seq1  TTCATGATTTATCTCAATTGAATAGATAGAATATTTTATAATGTTAGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGATTTATCTCAATTGAATAGATAGAATATTTTATAATGTTAGTGT  550

seq1  GGCTGGAATCAGTTGCAACTAAAAAATAAGTGTCTGTTCTTTTTCAGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGAATCAGTTGCAACTAAAAAATAAGTGTCTGTTCTTTTTCAGGAA  600

seq1  AGAATAAATTCAAGTGGCAATACCAAGTCCAATCCCTACTTGAACCACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAATTCAAGTGGCAATACCAAGTCCAATCCCTACTTGAACCACAC  650

seq1  TTTCCATAATTGTTCCTGTCATTTACCCTGTTTAATCTAAGTGTGATGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATAATTGTTCCTGTCATTTACCCTGTTTAATCTAAGTGTGATGGT  700

seq1  TGTCTCTCTCCCCTTTCCCACATTTCCTGTTCTTTCTTTATCTCAATTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTCTCCCCTTTCCCACATTTCCTGTTCTTTCTTTATCTCAATTCC  750

seq1  TCTTCTTTTCTTTCTCATCTTTTGTTCTATTCTTCTCTGCCTTTCTCGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTTCTTTCTCATCTTTTGTTCTATTCTTCTCTGCCTTTCTCGGC  800

seq1  TACTGCCCTATACCTTCTCCTTATCATCCTCCACATGGCCATCATCCTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCCCTATACCTTCTCCTTATCATCCTCCACATGGCCATCATCCTAT  850

seq1  TCCGTCTGCTCCATTACCACCTTCTCTTTTTCTTCCTAATTAATTCACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTCTGCTCCATTACCACCTTCTCTTTTTCTTCCTAATTAATTCACAA  900

seq1  AAAGCATTCAGTACAGACATGAAAGAACTTCCTACCATAGTCACGATCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATTCAGTACAGACATGAAAGAACTTCCTACCATAGTCACGATCAA  950

seq1  CTTATATAAGCTACATTAATTTCATACTGGATATCTTTATTTTATTGTTC  1000
      ||||||| ||||||||| ||||||||||||||||||||||||||||||| 
seq2  CTTATAT-AGCTACATT-ATTTCATACTGGATATCTTTATTTTATTGTT-  997

seq1  CTGCTAAGGAGGATATGACCATTCACTTGATAGTGCTTGAATCTTTCATT  1050
      ||||||| |||||  |||||| |||| |||||| ||||||||| |||| |
seq2  CTGCTAA-GAGGAATTGACCA-TCAC-TGATAGGGCTTGAATC-TTCA-T  1042

seq1  ATAATTTTATAGTATCTATCTCCACTGTAAATTGGATATTCTCTTAAATG  1100
      |||| |||||||   |||||||| ||||||| |||| ||||||| |    
seq2  ATAA-TTTATAG--ACTATCTCC-CTGTAAA-TGGAAATTCTCTGA---T  1084

seq1  GCTCTAAATTCTGTCTGTAGACCTCAATTGTTAATTCTGCT  1141
      ||| ||||||| ||||||||||||||| |||| ||||||||
seq2  GCT-TAAATTC-GTCTGTAGACCTCAA-TGTT-ATTCTGCT  1121