BAC Information

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BAC

Clone NameB6Ng01-062P10
Chromosome10 (Build37)
Map Location 13,215,646 - 13,387,519
singlet/doubletdoublet
Overlap geneFuca2, Pex3, Deadc1, Aig1
Upstream geneUtrn, LOC665172, Stx11, Sf3b5, Plagl1, 4930519B02Rik, Ltv1, LOC666829, Phactr2, LOC100039475
Downstream geneEG666859, Hivep2, Gpr126, LOC100039571, LOC100039409, Vta1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062P10.bB6Ng01-062P10.g
ACCDH883201DH883202
length1,1321,053
definitionDH883201|Mus musculus domesticus DNA, BAC clone: B6Ng01-062P10, 5' end.DH883202|Mus musculus domesticus DNA, BAC clone: B6Ng01-062P10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,215,646 - 13,216,789)(13,386,471 - 13,387,519)
sequence
gaattccacctgaggaataccgaatggcagagaagcacctgaaaaaatga
tcaacatccttaattatcagggaaatgcaaatcaaaacaaccctgagatt
ccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagca
gatgctggcgagggtgtggagaaagaggaacactcctccattgttggtgg
gattgcaagcttgtacaaccactctggaaatcagtctggcggttcctcag
aaaattggacatagtactaccggaggatccagcaatacctctcctgggca
tatatccagaagatgtcccaaccggtaagaaggacacatgctccactatg
ttcatagcagccttatttataatagccagaagctggaaagaacccagatg
cccctcaacagaggaatggatacaggagagagagaaatgtacacaaagag
agagagagagagacaaagagacagaaagacagagagacagagaaacacgc
atacacatatacatacagagtgggggcaggtgtgtgtgcgctgacgtcag
ctgtcatttcttccactgcccacttcagagcagttctgggaagtgctgat
actggctggtggctgccatccagatcacaaacacaattccagaatggatc
ttgcagagcttcactctaatatcagtttcaccctcagccaactggtgaca
tctccaaggatggtaatgggcactgcttcctcttggcagcaacaaaaatt
atcaagaactacccctcatccaccaacctccaacctatcctgcccagttc
ccctgcctacccacagttgtcaacaggttgtgctgagtgacttatctgtt
gacagagggacaaagccctcacatttcttccatctggcatctcgaggtga
tatctgccaaacaaggtcacatcaggactccttagctgtgttccctacta
tatccaatgctcttgccccccccctcttttttttaatgagcatgcatcat
actggagaatctggtgttttaaattttggtgatcctctttggcttctgca
ggcgggagtagaagcttcatgaccttggtcctctgtcagtggagcaaggc
tctagcaaagactagcttggtaaagcatagcc
gaattcaggcagttcctcctcgcctcccagtttgaatgtgtggctttctc
tcagcagccaactccgatgatcacatggatcgtaatggtcccttgctgag
tccccgcctccctcctgaaagaacacatgttccctccggtgttcaatgtg
tcagcttgatgtttggcacctgtgtgctttgagaagttccaagtgattaa
agttaaggaaaaccagccatgagttttattgagggaaattcagattgaat
tctctccaggaaaacatcaccataaaatcaggtaggttggagagagtagt
tctcagtggaaacgaatcacttgcaactggtttaggcatgtgtcgggaga
tgtgctaaaggaaaactctctgaagttgattattggcctgccttcgtgga
taaatcactcagagatttgtgatttagaaccaggaagaaaacacattccc
tcatgacctcatgacggaattcattccgaaaggcttgcacaatttgcctg
ttccctagggatgggtggagggacttgtaaccttgaaaatattcttgtat
ggagtacaggaaaatgttatatacttccacatgaagagtaacactggaaa
agcttttgttgctgcttatttgatttgctcagatatttaaaaaaaaaaaa
ctttaatgtcagctgatgatgctaatagctaattatctgccagttacatc
actaattatgtacttagtcctctatctctgctgtgttctctgttcttgct
gtcaactttctacctcattcacatagtttagatcatattttcagccagtg
ttgaaactaccctactaaccttggaaacgggatcaaaaacattccctaat
gttcaggtgattcaagaatagatgattgaactagaagtttttcttaaagt
aattaaggactatctacatacaccagggctatgttaacttgtgaagacct
aatgaaagaaattaggagggccctttgttaaaaataaatgattaacatta
aaaaatggtgactgtggatcattaattcaagtctagggactctcagagcc
ctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_13215646_13216789
seq2: B6Ng01-062P10.b_41_1172

seq1  GAATTCCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGA  50

seq1  TCAACATCCTTAATTATCAGGGAAATGCAAATCAAAACAACCCTGAGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATCCTTAATTATCAGGGAAATGCAAATCAAAACAACCCTGAGATT  100

seq1  CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA  150

seq1  GATGCTGGCGAGGGTGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGGCGAGGGTGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG  200

seq1  GATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAG  250

seq1  AAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCA  300

seq1  TATATCCAGAAGATGTCCCAACCGGTAAGAAGGACACATGCTCCACTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCCAGAAGATGTCCCAACCGGTAAGAAGGACACATGCTCCACTATG  350

seq1  TTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATG  400

seq1  CCCCTCAACAGAGGAATGGATACAGGAGAGAGAGAAATGTACACAAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCAACAGAGGAATGGATACAGGAGAGAGAGAAATGTACACAAAGAG  450

seq1  AGAGAGAGAGAGACAAAGAGACAGAAAGACAGAGAGACAGAGAAACACGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGACAAAGAGACAGAAAGACAGAGAGACAGAGAAACACGC  500

seq1  ATACACATATACATACAGAGTGGGGGCAGGTGTGTGTGCGCTGACGTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACATATACATACAGAGTGGGGGCAGGTGTGTGTGCGCTGACGTCAG  550

seq1  CTGTCATTTCTTCCACTGCCCACTTCAGAGCAGTTCTGGGAAGTGCTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATTTCTTCCACTGCCCACTTCAGAGCAGTTCTGGGAAGTGCTGAT  600

seq1  ACTGGCTGGTGGCTGCCATCCAGATCACAAACACAATTCCAGAATGGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTGGTGGCTGCCATCCAGATCACAAACACAATTCCAGAATGGATC  650

seq1  TTGCAGAGCTTCACTCTAATATCAGTTTCACCCTCAGCCAACTGGTGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGAGCTTCACTCTAATATCAGTTTCACCCTCAGCCAACTGGTGACA  700

seq1  TCTCCAAGGATGGTAATGGGCACTGCTTCCTCTTGGCAGCAACAAAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAAGGATGGTAATGGGCACTGCTTCCTCTTGGCAGCAACAAAAATT  750

seq1  ATCAAGAACTACCCCTCATCCACCAACCTCCAACCTATCCTGCCCAGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGAACTACCCCTCATCCACCAACCTCCAACCTATCCTGCCCAGTTC  800

seq1  CCCTGCCTACCCACAGTTGTCAACAGGTTGTGCTGAGTGACTTATCTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCTACCCACAGTTGTCAACAGGTTGTGCTGAGTGACTTATCTGTT  850

seq1  GACAGAGGGACAAAGCCCTCACATTTCTTCCATCTGGCATCTCGAGGTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGGGACAAAGCCCTCACATTTCTTCCATCTGGCATCTCGAGGTGA  900

seq1  TATCTGCCAAACAAGGTCACATCAGGACTCCTTAGCTGTGTTCCCTACTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TATCTGCCAAACAAGGTCACATCAGGACTCCTTAGCTGTGTTCCCTACT-  949

seq1  ATATCCAATGCTCTTGCCCCCCCCCCTCTTTTTTTTAATGAGCATGCATC  1000
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATATCCAATGCTCTTG-CCCCCCCCCTCTTTTTTTTAATGAGCATGCATC  998

seq1  ATACCTGGAGAATCTGATGTTTTCAGATTTTTGTGATCCTCTTTGGCATC  1050
      ||| |||||||||||| |||||| | ||||| ||||||||||||||| ||
seq2  ATA-CTGGAGAATCTGGTGTTTT-AAATTTTGGTGATCCTCTTTGGCTTC  1046

seq1  TGCAAGGGCGGAGTAGAAGCTTCAATGAACCTTGGTCCTCTGTTCAGT-G  1099
      ||| |||  |||||||||||||| ||| |||||||||||||| ||||| |
seq2  TGC-AGGCGGGAGTAGAAGCTTC-ATG-ACCTTGGTCCTCTG-TCAGTGG  1092

seq1  AGCAGAGGCTCTAAGCACAAAGACTAGCTTGGTAAAGCATTAGCC  1144
      |||| ||||||||    |||||||||||||||||||||| |||||
seq2  AGCA-AGGCTCTA---GCAAAGACTAGCTTGGTAAAGCA-TAGCC  1132

seq1: chr10_13386471_13387519
seq2: B6Ng01-062P10.g_68_1120 (reverse)

seq1  CAGGGCTCTGAAGGGTCCTAGACTTGAATTAATGATCCACAGTCACCATT  50
      |||||||||||  |  ||||||||||||||||||||||||||||||||||
seq2  CAGGGCTCTGAGAGTCCCTAGACTTGAATTAATGATCCACAGTCACCATT  50

seq1  TTTTAATTGTTAATCATTTA-TTTTAACAAAGGGCCCTCCTAATATCTTT  99
      |||||| ||||||||||||| ||||||||||||||||||||||| |||||
seq2  TTTTAA-TGTTAATCATTTATTTTTAACAAAGGGCCCTCCTAATTTCTTT  99

seq1  CATTTGGGTCTCACAAGTT-ACATAGCCCT-GTGTATGTAGCTAAGTCTT  147
      |||| ||   ||||||||| |||||||||| |||||||||| | |||| |
seq2  CATTAGGTCTTCACAAGTTAACATAGCCCTGGTGTATGTAGAT-AGTCCT  148

seq1  TAA-TACTTT-GGGAAAACTTCTAGTTCATTCATCTATTCTTGAATCACC  195
      ||| ||||||  | ||||||||||||||| ||||||||||||||||||||
seq2  TAATTACTTTAAGAAAAACTTCTAGTTCAATCATCTATTCTTGAATCACC  198

seq1  TTGAACATTAGGGAATGTTTTTGATCCCGTTTCC-AGGTTAGTAGGGTAG  244
       ||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  -TGAACATTAGGGAATGTTTTTGATCCCGTTTCCAAGGTTAGTAGGGTAG  247

seq1  TTTCAACACTGGCTGAAAATATGATCTAAACTATGTGAATGAGGTAG-AA  293
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTTCAACACTGGCTGAAAATATGATCTAAACTATGTGAATGAGGTAGAAA  297

seq1  GTTGACAGCAAGAACAGAGAACACAGCAGAGATAGAGGACTAAGTACATA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACAGCAAGAACAGAGAACACAGCAGAGATAGAGGACTAAGTACATA  347

seq1  ATTAGTGATGTAACTGGCAGATAATTAGCTATTAGCATCATCAGCTGACA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTGATGTAACTGGCAGATAATTAGCTATTAGCATCATCAGCTGACA  397

seq1  TTAAAGTTTTTTTTTTTTAAATATCTGAGCAAATCAAATAAGCAGCAACA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTTTTTTTTTTTTAAATATCTGAGCAAATCAAATAAGCAGCAACA  447

seq1  AAAGCTTTTCCAGTGTTACTCTTCATGTGGAAGTATATAACATTTTCCTG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTTTCCAGTGTTACTCTTCATGTGGAAGTATATAACATTTTCCTG  497

seq1  TACTCCATACAAGAATATTTTCAAGGTTACAAGTCCCTCCACCCATCCCT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCATACAAGAATATTTTCAAGGTTACAAGTCCCTCCACCCATCCCT  547

seq1  AGGGAACAGGCAAATTGTGCAAGCCTTTCGGAATGAATTCCGTCATGAGG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACAGGCAAATTGTGCAAGCCTTTCGGAATGAATTCCGTCATGAGG  597

seq1  TCATGAGGGAATGTGTTTTCTTCCTGGTTCTAAATCACAAATCTCTGAGT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAGGGAATGTGTTTTCTTCCTGGTTCTAAATCACAAATCTCTGAGT  647

seq1  GATTTATCCACGAAGGCAGGCCAATAATCAACTTCAGAGAGTTTTCCTTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATCCACGAAGGCAGGCCAATAATCAACTTCAGAGAGTTTTCCTTT  697

seq1  AGCACATCTCCCGACACATGCCTAAACCAGTTGCAAGTGATTCGTTTCCA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATCTCCCGACACATGCCTAAACCAGTTGCAAGTGATTCGTTTCCA  747

seq1  CTGAGAACTACTCTCTCCAACCTACCTGATTTTATGGTGATGTTTTCCTG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAACTACTCTCTCCAACCTACCTGATTTTATGGTGATGTTTTCCTG  797

seq1  GAGAGAATTCAATCTGAATTTCCCTCAATAAAACTCATGGCTGGTTTTCC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAATTCAATCTGAATTTCCCTCAATAAAACTCATGGCTGGTTTTCC  847

seq1  TTAACTTTAATCACTTGGAACTTCTCAAAGCACACAGGTGCCAAACATCA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTTAATCACTTGGAACTTCTCAAAGCACACAGGTGCCAAACATCA  897

seq1  AGCTGACACATTGAACACCGGAGGGAACATGTGTTCTTTCAGGAGGGAGG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACACATTGAACACCGGAGGGAACATGTGTTCTTTCAGGAGGGAGG  947

seq1  CGGGGACTCAGCAAGGGACCATTACGATCCATGTGATCATCGGAGTTGGC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGACTCAGCAAGGGACCATTACGATCCATGTGATCATCGGAGTTGGC  997

seq1  TGCTGAGAGAAAGCCACACATTCAAACTGGGAGGCGAGGAGGAACTGCCT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGAGAAAGCCACACATTCAAACTGGGAGGCGAGGAGGAACTGCCT  1047

seq1  GAATTC  1049
      ||||||
seq2  GAATTC  1053