BAC Information

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BAC

Clone NameB6Ng01-063M08
Chromosome10 (Build37)
Map Location 88,289,153 - 88,400,610
singlet/doubletdoublet
Overlap geneUtp20, Slc5a8
Upstream geneENSMUSG00000058934, Igf1, Tyms-ps, Pmch, 4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000, 1200002N14Rik, Gnptab, Sycp3, Chpt1, 8030451F13Rik, LOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1
Downstream geneTmem16d, Gas2l3, Nr1h4, EG627532, Slc17a8, Scyl2, Actr6, E030041M21Rik, E530015N03Rik, Anks1b, LOC100043039
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063M08.bB6Ng01-063M08.g
ACCDH883762DH883763
length1,186647
definitionDH883762|Mus musculus domesticus DNA, BAC clone: B6Ng01-063M08, 5' end.DH883763|Mus musculus domesticus DNA, BAC clone: B6Ng01-063M08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,399,402 - 88,400,610)(88,289,153 - 88,289,799)
sequence
gaattcaaggccagcctggtctacagagtgagttccaggacagccagggc
tatacagagaaaccctgtctcgaaaacaacaacaacaacaaaacaaaaac
ctctgactgaagggtgtgggctttattatacaaggaggacatagcaactc
ttgagtcaagagggtcatcagattgagcttccaaagaggtcactgtggat
tagcagcacaatcgtcagtcagtaagtgattcacagaccggaaccaccat
cttcctcgagaaacagagacttcaaatccagggctctgtgccagtgctgc
ttaatcagaaagcaggagtacagcccagcccttccaggtgatgccgacac
aggccaggccagactgtgacgtggccactgtggggcatccaggggacaaa
aggggagcagaggaaaacagaagaggatcctagagctccctgtgcagaag
tggacgggaacaccgtgaggaaacaccctcaacagatactcagtgccctt
tgagctgagtccgcctaaacaaagaggaaagtaaaatgggaatttttaaa
atgagaaaaaggagtgctcatgaaacaggaatgaaggataaaactggtac
ttctcaaagtatccttcggcttgatgaaattaaatcgcaaagctctcatc
tcactttcagggtgaaaaaggtcacgtgaattcccctctctagaaaattg
gaattttcctcaccctgtgattgggcagggagcaaataggtccttcaatc
caatgaatgacccgaagtggccaaagaaaagggaagttcttgccaaacag
gagatttggcagctgtttgtaggaaactttttccaaattaggcaattgag
tataaccatggtcatcttttgtacctaaaccttttatcggcttgattgac
cactgaattttacagcaagaaaattatagctttgagatgaaactttaact
ttaaacttcaaatggcatctttattttcagagatgacatggtcagatttt
gtgtttctaacgctatctgagtctgctactacagcatattcacactattt
tatttttctcactaaattggagttgatcagaaaaggttggcctgtttgta
cttttatgtggtttgtttgggtccatctttggcattctaggcaagggttc
tcctcctggacatagatcttggtctacctggttttg
gaattcaagtttcctcactcccctgcgaactaatgttttttttttttttt
tatactggcatagtctcccattttcgccagagccccgggcaagcgattcc
ggctctgcccggacttgcaggccctggggttaaggcgatcagctggtcag
gcagaggcagggcgaaccgcggctccgggcccaaactcccgcgctcaccc
ggtatgtgttctcggtcttgtgcgaaagtggctttggcttcatggctgcg
gcgggacagcggcccgcgagggtctcaggacgacaggaagggatccgcgg
gcactgcggaggagaaagttactcccacgcggtactctccaatgctccgg
tgcctgcttttcctcacgtgtagttagtgccgctgggcgccgccatgttg
gaaagccaggatgtgtgggtcatgtgggcggaagaggcgggccgagcatg
cgtgctcttcctgattgtcagtcgtgcagtttgcggatgtacagtttttg
ctacatgagaagttggccaacacaaaacaaactcagtggtatttttgtgg
acgttttgttttgttttggacattgtttgtcatatttgtcatttgcctgt
tggtcttgattttcgtttttgtagattggtggtgatggtggggtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_88399402_88400610
seq2: B6Ng01-063M08.b_50_1235 (reverse)

seq1  CAAAA-CAGGTAGACTAAAGGATCTATAGTCCAGGGGAGGAACCCTTGCC  49
      ||||| ||||||||| ||  ||||||| ||||||| |  |||||||||||
seq2  CAAAACCAGGTAGACCAA--GATCTAT-GTCCAGGAGGAGAACCCTTGCC  47

seq1  TAGCATGCAAAAGATTTGACACAACATAAACAACATAAAAGTACAAAACA  99
      ||| |||| ||||| | ||| ||| | |||| |||||||||||| |||||
seq2  TAGAATGCCAAAGA-TGGACCCAA-ACAAACCACATAAAAGTAC-AAACA  94

seq1  GGGCAAACTTTTCTGTATCAACTTCAAATTTTAGTTGAGAAAAATTAAAA  149
      || ||| |||||||| ||||||| |||  ||||| ||||||||||   ||
seq2  GGCCAACCTTTTCTG-ATCAACTCCAA--TTTAG-TGAGAAAAAT---AA  137

seq1  ATTAGTGTGAATAATTGCTGGTAGTAGCAGGACTTCAGATTAGCGTTAGA  199
      | |||||||||||  |||| ||||||||| ||| ||||| ||||||||||
seq2  AATAGTGTGAATA--TGCT-GTAGTAGCA-GAC-TCAGA-TAGCGTTAGA  181

seq1  AACACAAAATCTGAACATGTTCATCTTCTTGAAAATAAAGATGCCATTTG  249
      |||||||||||||| |||| ||||||   |||||||||||||||||||||
seq2  AACACAAAATCTGACCATG-TCATCT--CTGAAAATAAAGATGCCATTTG  228

seq1  AAGTTTTAAAGTTAAAGTTTTCATCTCAAAGCTATAATTTTCTTGCTGTA  299
      ||| ||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAG-TTTAAAGTTAAAG-TTTCATCTCAAAGCTATAATTTTCTTGCTGTA  276

seq1  AAATTCAGTGGTCAATCAAGCCGATAAAAGGTTTAGGTACAAAAGATGAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAGTGGTCAATCAAGCCGATAAAAGGTTTAGGTACAAAAGATGAC  326

seq1  CATGGTTATACTCAATTGCCTAATTTGGAAAAAGTTTCCTACAAACAGCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTATACTCAATTGCCTAATTTGGAAAAAGTTTCCTACAAACAGCT  376

seq1  GCCAAATCTCCTGTTTGGCAAGAACTTCCCTTTTCTTTGGCCACTTCGGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAATCTCCTGTTTGGCAAGAACTTCCCTTTTCTTTGGCCACTTCGGG  426

seq1  TCATTCATTGGATTGAAGGACCTATTTGCTCCCTGCCCAATCACAGGGTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCATTGGATTGAAGGACCTATTTGCTCCCTGCCCAATCACAGGGTG  476

seq1  AGGAAAATTCCAATTTTCTAGAGAGGGGAATTCACGTGACCTTTTTCACC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATTCCAATTTTCTAGAGAGGGGAATTCACGTGACCTTTTTCACC  526

seq1  CTGAAAGTGAGATGAGAGCTTTGCGATTTAATTTCATCAAGCCGAAGGAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGTGAGATGAGAGCTTTGCGATTTAATTTCATCAAGCCGAAGGAT  576

seq1  ACTTTGAGAAGTACCAGTTTTATCCTTCATTCCTGTTTCATGAGCACTCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAGAAGTACCAGTTTTATCCTTCATTCCTGTTTCATGAGCACTCC  626

seq1  TTTTTCTCATTTTAAAAATTCCCATTTTACTTTCCTCTTTGTTTAGGCGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCATTTTAAAAATTCCCATTTTACTTTCCTCTTTGTTTAGGCGG  676

seq1  ACTCAGCTCAAAGGGCACTGAGTATCTGTTGAGGGTGTTTCCTCACGGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCTCAAAGGGCACTGAGTATCTGTTGAGGGTGTTTCCTCACGGTG  726

seq1  TTCCCGTCCACTTCTGCACAGGGAGCTCTAGGATCCTCTTCTGTTTTCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCGTCCACTTCTGCACAGGGAGCTCTAGGATCCTCTTCTGTTTTCCT  776

seq1  CTGCTCCCCTTTTGTCCCCTGGATGCCCCACAGTGGCCACGTCACAGTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCCCTTTTGTCCCCTGGATGCCCCACAGTGGCCACGTCACAGTCT  826

seq1  GGCCTGGCCTGTGTCGGCATCACCTGGAAGGGCTGGGCTGTACTCCTGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGCCTGTGTCGGCATCACCTGGAAGGGCTGGGCTGTACTCCTGCT  876

seq1  TTCTGATTAAGCAGCACTGGCACAGAGCCCTGGATTTGAAGTCTCTGTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATTAAGCAGCACTGGCACAGAGCCCTGGATTTGAAGTCTCTGTTT  926

seq1  CTCGAGGAAGATGGTGGTTCCGGTCTGTGAATCACTTACTGACTGACGAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAGGAAGATGGTGGTTCCGGTCTGTGAATCACTTACTGACTGACGAT  976

seq1  TGTGCTGCTAATCCACAGTGACCTCTTTGGAAGCTCAATCTGATGACCCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGCTAATCCACAGTGACCTCTTTGGAAGCTCAATCTGATGACCCT  1026

seq1  CTTGACTCAAGAGTTGCTATGTCCTCCTTGTATAATAAAGCCCACACCCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACTCAAGAGTTGCTATGTCCTCCTTGTATAATAAAGCCCACACCCT  1076

seq1  TCAGTCAGAGGTTTTTGTTTTGTTGTTGTTGTTGTTTTCGAGACAGGGTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCAGAGGTTTTTGTTTTGTTGTTGTTGTTGTTTTCGAGACAGGGTT  1126

seq1  TCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGG  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGG  1176

seq1  CCTTGAATTC  1209
      ||||||||||
seq2  CCTTGAATTC  1186

seq1: chr10_88289153_88289799
seq2: B6Ng01-063M08.g_66_712

seq1  GAATTCAAGTTTCCTCACTCCCCTGCGAACTAATGTTTTTTTTTTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTTTCCTCACTCCCCTGCGAACTAATGTTTTTTTTTTTTTTT  50

seq1  TATACTGGCATAGTCTCCCATTTTCGCCAGAGCCCCGGGCAAGCGATTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTGGCATAGTCTCCCATTTTCGCCAGAGCCCCGGGCAAGCGATTCC  100

seq1  GGCTCTGCCCGGACTTGCAGGCCCTGGGGTTAAGGCGATCAGCTGGTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGCCCGGACTTGCAGGCCCTGGGGTTAAGGCGATCAGCTGGTCAG  150

seq1  GCAGAGGCAGGGCGAACCGCGGCTCCGGGCCCAAACTCCCGCGCTCACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCAGGGCGAACCGCGGCTCCGGGCCCAAACTCCCGCGCTCACCC  200

seq1  GGTATGTGTTCTCGGTCTTGTGCGAAAGTGGCTTTGGCTTCATGGCTGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGTGTTCTCGGTCTTGTGCGAAAGTGGCTTTGGCTTCATGGCTGCG  250

seq1  GCGGGACAGCGGCCCGCGAGGGTCTCAGGACGACAGGAAGGGATCCGCGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGACAGCGGCCCGCGAGGGTCTCAGGACGACAGGAAGGGATCCGCGG  300

seq1  GCACTGCGGAGGAGAAAGTTACTCCCACGCGGTACTCTCCAATGCTCCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGCGGAGGAGAAAGTTACTCCCACGCGGTACTCTCCAATGCTCCGG  350

seq1  TGCCTGCTTTTCCTCACGTGTAGTTAGTGCCGCTGGGCGCCGCCATGTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCTTTTCCTCACGTGTAGTTAGTGCCGCTGGGCGCCGCCATGTTG  400

seq1  GAAAGCCAGGATGTGTGGGTCATGTGGGCGGAAGAGGCGGGCCGAGCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCAGGATGTGTGGGTCATGTGGGCGGAAGAGGCGGGCCGAGCATG  450

seq1  CGTGCTCTTCCTGATTGTCAGTCGTGCAGTTTGCGGATGTACAGTTTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCTCTTCCTGATTGTCAGTCGTGCAGTTTGCGGATGTACAGTTTTTG  500

seq1  CTACATGAGAAGTTGGCCAACACAAAACAAACTCAGTGGTATTTTTGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGAGAAGTTGGCCAACACAAAACAAACTCAGTGGTATTTTTGTGG  550

seq1  ACGTTTTGTTTTGTTTTGGACATTGTTTGTCATATTTGTCATTTGCCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTTGTTTTGTTTTGGACATTGTTTGTCATATTTGTCATTTGCCTGT  600

seq1  TGGTCTTGATTTTCGTTTTTGTAGATTGGTGGTGATGGTGGGGTTTG  647
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTGATTTTCGTTTTTGTAGATTGGTGGTGATGGTGGGGTTTG  647