BAC Information

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BAC

Clone NameB6Ng01-063N18
Chromosome10 (Build37)
Map Location 18,185,218 - 18,313,453
singlet/doubletdoublet
Overlap geneNhsl1, Hebp2, EG627729, D10Bwg1379e
Upstream geneCited2, Txlnb, LOC665321, Heca, 3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646
Downstream geneEG237300, Perp, Tnfaip3, Tpi-rs5, EG637620, Olig3, Ifngr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063N18.bB6Ng01-063N18.g
ACCDH883824DH883825
length1,061977
definitionDH883824|Mus musculus domesticus DNA, BAC clone: B6Ng01-063N18, 5' end.DH883825|Mus musculus domesticus DNA, BAC clone: B6Ng01-063N18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,312,386 - 18,313,453)(18,185,218 - 18,186,200)
sequence
gaattcttcccagattctagcttctgtctccccatcatcgacttttacgt
tgtctactttctatgttaaagattataaaaaagctaagatactgccatgc
catttgaagatgttactttgaaataaagatgatagaaaagtgaatagatc
tgtaaaggacttcccttcttaatttggatcctaatgtagacctggaagta
cttagagcaaattggtaatgttctagtttccttcctgtttctgtgataac
actcagaccaaaaggaactggaggaagaaagggtttatttggcttacact
gccagatcatagtccatcactgaaggaagtcatggcaggaacttgaatca
caaaccataaatttggtgtctctctcacagtctcatgcttcactaacttt
cttataccccagacttcctgcttaggaaatggtacgcccacagtgatctg
gagtttcctaaaggcactcaattcaatccctcacataatgtccacagacc
aatatgattaagtctcaattgaaatgtttgattaggtgattctagacttt
tgtcaagttgacccctaatgctaattagcacaggtagcttctagaacctt
ctgcagagtaataaatattcaggtttccttatactgaataacataaaaaa
aaatatctacataggagctgggagaaagggaagaggctgagttcctgttt
aatgtaaagaatttctccctgagatgaagaaaagtttctacagagacagt
tatgtttatgtcagcatggtaactacacttagaaccaataaattggatag
ttaaaaaacagttgtgcatgtgtgtaaaaaacagggcaaaaggttggaag
ggttagggtattctgtcttatatagttatacctatttttttttttaaatg
ctgtttttatttcctatagcttgataactcagtatcttcttacagtctac
agctcctagattttaaagagcaggaattctatcagccatgattaaaatag
ttttccctttgaaattagatattaaagtgcaagcagatggctcagtgggt
aaagttgatta
gaattcagcctgtgctttttacccaccctctgcaccacctgcaggggtgt
ctggagaacactcacgcacacctcctgttttgactgtgaccatctcctgc
tcatggcaggagctccaagagctgcagagttgggaccacttactcttgag
atgttcagatattcacagtgttgttgaacagaggctgagggaaggaagca
ctgtgcagaaagttagcacaccctcactctttagcatggatggtgacaca
cacaggcgtctaaatctaaattaaccaccgcctgcctcctggtgacaagc
agtgtgggtatgttcttgtcctgtccttttctgtctttccctcacagttg
tcccaagagtcttcacaccccatgatatgcagacctgagtctaaccagag
tccctccatgtatgtcttcaccgagacccccttctgtagcatcccagctg
tttgttcctcttctaaataaatgagggggtccttcatcatttccactagg
aacctccagttcacttctctggtcttactcatttttactaccatttttat
cttttagggtgtgtcttccccactggactgtgaacttcctaagaaggcct
gttgctttttttttttttttaaggaggcagtggaatacaggaccttgtga
gcattctgcacgcatacttaactacagagttctatctctagactattgct
tttgagatgggttttctctgggtagcctagggtggtgcttgctttcgacc
tgcccgagctgggattgtaaggcacatgcacctccgtggccatgggtgat
gaacttttatgctggcatacagggaactagtgagtgtccacaaaaaactg
tagagattgactggagccactggccgagtaatgtgcttctgaactgatag
gtggctatacctaccaggggaagtgaggcatgacggccaaggaaactggt
tgtaaataaagacacctctcactggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_18312386_18313453
seq2: B6Ng01-063N18.b_50_1110 (reverse)

seq1  TAATCACCTTTACCCACTGAGCCATCTTGCTTGCACTTTAATATCTAATT  50
      |||||| ||||||||||||||||||| |||||||||||||||||||||||
seq2  TAATCAACTTTACCCACTGAGCCATC-TGCTTGCACTTTAATATCTAATT  49

seq1  TCAAAAGGGGAAAACTATTTTAATCATGGCTGATAGAATTCCTGGCTCCT  100
      |||||  |||||||||||||||||||||||||||||||||||| ||||  
seq2  TCAAA--GGGAAAACTATTTTAATCATGGCTGATAGAATTCCT-GCTC--  94

seq1  TTTAAAATCTAGGAGCTGTAGACTGTAAGAAGATACTGAGTTATCAAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATCTAGGAGCTGTAGACTGTAAGAAGATACTGAGTTATCAAGCT  144

seq1  ATAGGAAATAAAAACAGCATTTAATAAAAAAAATAGGTATAACTATATAA  200
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATAGGAAATAAAAACAGCATTTAAAAAAAAAAATAGGTATAACTATATAA  194

seq1  GACAGAATACCCTAACCCTTCCAACCTTTTGCCCTGTTTTTTTACACACA  250
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GACAGAATACCCTAACCCTTCCAACCTTTTGCCCTG-TTTTTTACACACA  243

seq1  TGCACAACTGTTTTTTAACTATCCAATTTATTGGTTCTAAGTGTAGTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAACTGTTTTTTAACTATCCAATTTATTGGTTCTAAGTGTAGTTAC  293

seq1  CATGCTGACATAAACATAACTGTCTCTGTAGAAACTTTTCTTCATCTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGACATAAACATAACTGTCTCTGTAGAAACTTTTCTTCATCTCAG  343

seq1  GGAGAAATTCTTTACATTAAACAGGAACTCAGCCTCTTCCCTTTCTCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAATTCTTTACATTAAACAGGAACTCAGCCTCTTCCCTTTCTCCCA  393

seq1  GCTCCTATGTAGATATTTTTTTTTATGTTATTCAGTATAAGGAAACCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTATGTAGATATTTTTTTTTATGTTATTCAGTATAAGGAAACCTGA  443

seq1  ATATTTATTACTCTGCAGAAGGTTCTAGAAGCTACCTGTGCTAATTAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATTACTCTGCAGAAGGTTCTAGAAGCTACCTGTGCTAATTAGCA  493

seq1  TTAGGGGTCAACTTGACAAAAGTCTAGAATCACCTAATCAAACATTTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGGTCAACTTGACAAAAGTCTAGAATCACCTAATCAAACATTTCAA  543

seq1  TTGAGACTTAATCATATTGGTCTGTGGACATTATGTGAGGGATTGAATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACTTAATCATATTGGTCTGTGGACATTATGTGAGGGATTGAATTG  593

seq1  AGTGCCTTTAGGAAACTCCAGATCACTGTGGGCGTACCATTTCCTAAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTTTAGGAAACTCCAGATCACTGTGGGCGTACCATTTCCTAAGCA  643

seq1  GGAAGTCTGGGGTATAAGAAAGTTAGTGAAGCATGAGACTGTGAGAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCTGGGGTATAAGAAAGTTAGTGAAGCATGAGACTGTGAGAGAGA  693

seq1  CACCAAATTTATGGTTTGTGATTCAAGTTCCTGCCATGACTTCCTTCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAATTTATGGTTTGTGATTCAAGTTCCTGCCATGACTTCCTTCAGT  743

seq1  GATGGACTATGATCTGGCAGTGTAAGCCAAATAAACCCTTTCTTCCTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGACTATGATCTGGCAGTGTAAGCCAAATAAACCCTTTCTTCCTCCA  793

seq1  GTTCCTTTTGGTCTGAGTGTTATCACAGAAACAGGAAGGAAACTAGAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTTTGGTCTGAGTGTTATCACAGAAACAGGAAGGAAACTAGAACA  843

seq1  TTACCAATTTGCTCTAAGTACTTCCAGGTCTACATTAGGATCCAAATTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAATTTGCTCTAAGTACTTCCAGGTCTACATTAGGATCCAAATTAA  893

seq1  GAAGGGAAGTCCTTTACAGATCTATTCACTTTTCTATCATCTTTATTTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGAAGTCCTTTACAGATCTATTCACTTTTCTATCATCTTTATTTCA  943

seq1  AAGTAACATCTTCAAATGGCATGGCAGTATCTTAGCTTTTTTATAATCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAACATCTTCAAATGGCATGGCAGTATCTTAGCTTTTTTATAATCTT  993

seq1  TAACATAGAAAGTAGACAACGTAAAAGTCGATGATGGGGAGACAGAAGCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATAGAAAGTAGACAACGTAAAAGTCGATGATGGGGAGACAGAAGCT  1043

seq1  AGAATCTGGGAAGAATTC  1068
      ||||||||||||||||||
seq2  AGAATCTGGGAAGAATTC  1061

seq1: chr10_18185218_18186200
seq2: B6Ng01-063N18.g_71_1047

seq1  GAATTCAGCCTGTGCTTTTTACCCACCCTCTGCACCACCTGCAGGGGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCTGTGCTTTTTACCCACCCTCTGCACCACCTGCAGGGGTGT  50

seq1  CTGGAGAACACTCACGCACACCTCCTGTTTTGACTGTGACCATCTCCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAACACTCACGCACACCTCCTGTTTTGACTGTGACCATCTCCTGC  100

seq1  TCATGGCAGGAGCTCCAAGAGCTGCAGAGTTGGGACCACTTACTCTTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCAGGAGCTCCAAGAGCTGCAGAGTTGGGACCACTTACTCTTGAG  150

seq1  ATGTTCAGATATTCACAGTGTTGTTGAACAGAGGCTGAGGGAAGGAAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCAGATATTCACAGTGTTGTTGAACAGAGGCTGAGGGAAGGAAGCA  200

seq1  CTGTGCAGAAAGTTAGCACACCCTCACTCTTTAGCATGGATGGTGACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCAGAAAGTTAGCACACCCTCACTCTTTAGCATGGATGGTGACACA  250

seq1  CACAGGCGTCTAAATCTAAATTAACCACCGCCTGCCTCCTGGTGACAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCGTCTAAATCTAAATTAACCACCGCCTGCCTCCTGGTGACAAGC  300

seq1  AGTGTGGGTATGTTCTTGTCCTGTCCTTTTCTGTCTTTCCCTCACAGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGGTATGTTCTTGTCCTGTCCTTTTCTGTCTTTCCCTCACAGTTG  350

seq1  TCCCAAGAGTCTTCACACCCCATGATATGCAGACCTGAGTCTAACCAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGAGTCTTCACACCCCATGATATGCAGACCTGAGTCTAACCAGAG  400

seq1  TCCCTCCATGTATGTCTTCACCGAGACCCCCTTCTGTAGCATCCCAGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCATGTATGTCTTCACCGAGACCCCCTTCTGTAGCATCCCAGCTG  450

seq1  TTTGTTCCTCTTCTAAATAAATGAGGGGGTCCTTCATCATTTCCACTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCCTCTTCTAAATAAATGAGGGGGTCCTTCATCATTTCCACTAGG  500

seq1  AACCTCCAGTTCACTTCTCTGGTCTTACTCATTTTTACTACCATTTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCCAGTTCACTTCTCTGGTCTTACTCATTTTTACTACCATTTTTAT  550

seq1  CTTTTAGGGTGTGTCTTCCCCACTGGACTGTGAACTTCCTAAGAAGGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGGGTGTGTCTTCCCCACTGGACTGTGAACTTCCTAAGAAGGCCT  600

seq1  GTTGCTTTTTTTTTTTTTTTAAGGAGGCAGTGGAATACAGGACCTTGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTTTTTTTTTTTTTTAAGGAGGCAGTGGAATACAGGACCTTGTGA  650

seq1  GCATTCTGCACGCATACTTAACTACAGAGTTCTATCTCTAGACTATTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTGCACGCATACTTAACTACAGAGTTCTATCTCTAGACTATTGCT  700

seq1  TTTGAGATGGG-TTTCTCTGGGTAGCCTAGGGTGGTGCTTGC-TTCGACC  748
      ||||||||||| |||||||||||||||||||||||||||||| |||||||
seq2  TTTGAGATGGGTTTTCTCTGGGTAGCCTAGGGTGGTGCTTGCTTTCGACC  750

seq1  TGGCCCGAGCTGGGATTGT-AGGCACATGCACCTCCGTGGCCATGGGTGA  797
      | ||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  T-GCCCGAGCTGGGATTGTAAGGCACATGCACCTCCGTGGCCATGGGTGA  799

seq1  TGAACTTTTATGCTGGGCATACAAGGGAACTAGTGAGTGTCCAGCAGAAA  847
      |||||||||||||| ||||||| |||||||||||||||||||| || |||
seq2  TGAACTTTTATGCT-GGCATAC-AGGGAACTAGTGAGTGTCCA-CAAAAA  846

seq1  ACTGTAGAGATTGGACATGAGCCACTGCCGTAGTTAATGTGCTTTCTGAA  897
      |||||||||||| |||  ||||||||| |  || |||||||| |||||||
seq2  ACTGTAGAGATT-GACTGGAGCCACTGGCCGAG-TAATGTGC-TTCTGAA  893

seq1  CTGATAGGTTGGCTATACCTACCAGGGGAAGTGAGGCATGACGGCCCAAG  947
      |||||||| ||||||||||||||||||||||||||||||||||| |||||
seq2  CTGATAGG-TGGCTATACCTACCAGGGGAAGTGAGGCATGACGG-CCAAG  941

seq1  GAAAACTTGTTGTTAATAAAGACA-CTCTCACTGTTT  983
      | ||||| ||||| |||||||||| ||||||||| ||
seq2  G-AAACTGGTTGTAAATAAAGACACCTCTCACTGGTT  977