BAC Information

Click to search

BAC

Clone NameB6Ng01-063N20
Chromosome11 (Build37)10 (Build37)
Map Location 71,152,349 - 71,153,537104,054,118 - 104,054,363
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAlox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249
Downstream gene9230020A06Rik, Wscd1, Aipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063N20.bB6Ng01-063N20.g
ACCDH883828DH883829
length1,157864
definitionDH883828|Mus musculus domesticus DNA, BAC clone: B6Ng01-063N20, 5' end.DH883829|Mus musculus domesticus DNA, BAC clone: B6Ng01-063N20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(71,152,349 - 71,153,537)(104,054,118 - 104,054,363)
sequence
gaattcagtatagcagggagatttggatcgtctgcagagataagcaatat
caaaatatcaatgtcacaactatgaaggtctgctagtctgtcatcacact
acaagtgagcaccaacaaatgtgccaggaagcctggtatgacagctttga
tatcaggcaacatttctgggaccctaagaaccacatcctgccactcacat
aacactacatcatcagcctccagatgggcatcaacaagttaccagccagg
aaggcaacctcctctctaaaaactagcctttatggtaccagaagatacca
tgccatgcaagcttctaagggaagaaagcaaccaagaatcctacccaact
ataatgcctatgaaccttagcaatgaccagaatggcatgataaccctaag
gatgtagtagtggcacaaacaccttagtggtaaccaagagctcaataaca
aagactggctcaacaaaggatttattcctagtcctggaaacgcccatgct
gccaacagccagagctaatggaaaccatggattttggaagagaatgtcca
actgccactttacaaaaccagcataatccctaactacattttaaatattt
gtccttataagtatagtccccactcctcatcaagaaaattctttgcagca
aatgaggaccattatagaaaaaccacaataaatcaaaatacagagttgtg
gaacacagtcccaactgataacatccacaacacaacattttcagaaatga
aacacaattatttgtgtcaaccctagctgaaaacaaaacaaacaaaattt
tgcaaaccagagttgtggaggatttcatagtggtagctatctaagctgtg
aaagcctgggaatggctcacagatccacttttatagcatgcacaagtcct
aaggagccatgctcagaaacaagaagagaaaccagaacactaactttgac
aaaggcacagacacattgtttaaagcagtctgcaaaacagttgctcagca
ctatcagtcactctttaagacacatcctgtactacttatggtggcagtac
tactgtttttaattggtgatataagcttctcagcttctctaattcttctt
gcctcactcctcatgttactatggcatgcttccttctgtcccgactttca
gataaat
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcactccagtcagaatggctaacatcaaaaactcaggtgacagc
agatgctggcgaggatgtggagaaaggggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcattg
caataacaagaagaaaagttaagacaacatttgctgcttctgaatccccc
agtccaaacaaacattctacaatgagaattaccaagacgaaccaggacat
ggaacttagtggcaatcatagacctcagagatttgggagtttaaagatat
cagagaaaaagagctcaatgaacttgaagagaatgaactcaaagatggta
ggtgcccaagtgatatgctagagaataagaacacactgctggaaaaaaca
acaatgattaaaaacctgtgatttgaaaactgagtaaaaaaagataggaa
tattgaagaaaactcaactgaatgaaggtcaaatgaaaagctcaacaaca
caattgcaaaattcaaagaaagtcttataaatagactgtataaaagtaga
agatattataaaatgcatagaaggtagactacatgagtaaataatatttt
taaaaattgataaaaaccccaaatacacaggtaggaagtgtagagatacc
acaaaatgccacatcttccatttctaggcaaaagtgaatgaggggagagg
acccccgtgttaatgcacaggccagatctcaataagatcaaataaatctg
ggaagacaactact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_71152349_71153537
seq2: B6Ng01-063N20.b_48_1204 (reverse)

seq1  ATTTATCTGGAAAGATCGGGGGACAGAAGGAAGGCATGTGCCATAGTAAA  50
      |||||||| ||||| ||  ||||||||||||| |||  ||||||||||| 
seq2  ATTTATCT-GAAAG-TC--GGGACAGAAGGAA-GCA--TGCCATAGTAA-  42

seq1  CCATGGAGGAGTGAGGCAAGAAGAATTTTAGAGGAAGCTGGAGAAGGCTT  100
       ||| ||||||||||||||||||||  ||||| |||||| ||||| ||||
seq2  -CAT-GAGGAGTGAGGCAAGAAGAA--TTAGA-GAAGCT-GAGAA-GCTT  85

seq1  ATATCACATATTTAAAAACAGTAGTACTGGCCACCATAAGTAGTAACAGG  150
      |||||||  | ||||||||||||||||| ||||||||||||||| |||||
seq2  ATATCAC-CAATTAAAAACAGTAGTACT-GCCACCATAAGTAGT-ACAGG  132

seq1  GATTGTGTCTGTAAAGAGTTGACTGGATAGTTGCTGAGCAACTGTTTTTG  200
         ||||||| ||||||| ||||| ||||| ||||||||||||| |||||
seq2  --ATGTGTCT-TAAAGAG-TGACT-GATAG-TGCTGAGCAACTG-TTTTG  175

seq1  CAGAACTGCTTTTAAAACAATGTGTCTGTGGCCTTTGTCAAAAGTTAGTG  250
      ||| ||||||||  ||||||||||||||| ||||||||| ||||||||||
seq2  CAG-ACTGCTTT--AAACAATGTGTCTGT-GCCTTTGTC-AAAGTTAGTG  220

seq1  TTCTGGTTTCTCTTCTTTGTTTCTGGGCATGGCTCCTTAGGACTTGTGCA  300
      ||||||||||||||| ||||||||| ||||||||||||||||||||||||
seq2  TTCTGGTTTCTCTTC-TTGTTTCTGAGCATGGCTCCTTAGGACTTGTGCA  269

seq1  TGCTATAAAAGTGGATCTGTGAGCCATTCCCAGGCTTTCACAGCTTAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATAAAAGTGGATCTGTGAGCCATTCCCAGGCTTTCACAGCTTAGAT  319

seq1  AGCTACCACTATGAAATCCTCCACAACCTCTGGTTTGCAAAATTTTGTTT  400
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGCTACCACTATGAAATCCTCCACAA-CTCTGGTTTGCAAAATTTTGTTT  368

seq1  GTTTTGTTTTCAGCTAGGGTTGACACAAATAATTGTGTTTCATTTCTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTCAGCTAGGGTTGACACAAATAATTGTGTTTCATTTCTGAA  418

seq1  AATGTTGTGTTGTGGATGTTATCAGTTGGGACTGTGTTCCACAACTCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGTGTTGTGGATGTTATCAGTTGGGACTGTGTTCCACAACTCTGT  468

seq1  ATTTTGATTTATTGTGGTTTTTCTATAATGGTCCTCATTTGCTGCAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGATTTATTGTGGTTTTTCTATAATGGTCCTCATTTGCTGCAAAGA  518

seq1  ATTTTCTTGATGAGGAGTGGGGACTATACTTATAAGGACAAATATTTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTGATGAGGAGTGGGGACTATACTTATAAGGACAAATATTTAAA  568

seq1  ATGTAGTTAGGGATTATGCTGGTTTTGTAAAGTGGCAGTTGGACATTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGTTAGGGATTATGCTGGTTTTGTAAAGTGGCAGTTGGACATTCTC  618

seq1  TTCCAAAATCCATGGTTTCCATTAGCTCTGGCTGTTGGCAGCATGGGCGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAATCCATGGTTTCCATTAGCTCTGGCTGTTGGCAGCATGGGCGT  668

seq1  TTCCAGGACTAGGAATAAATCCTTTGTTGAGCCAGTCTTTGTTATTGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGACTAGGAATAAATCCTTTGTTGAGCCAGTCTTTGTTATTGAGC  718

seq1  TCTTGGTTACCACTAAGGTGTTTGTGCCACTACTACATCCTTAGGGTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTTACCACTAAGGTGTTTGTGCCACTACTACATCCTTAGGGTTAT  768

seq1  CATGCCATTCTGGTCATTGCTAAGGTTCATAGGCATTATAGTTGGGTAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCATTCTGGTCATTGCTAAGGTTCATAGGCATTATAGTTGGGTAGG  818

seq1  ATTCTTGGTTGCTTTCTTCCCTTAGAAGCTTGCATGGCATGGTATCTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGGTTGCTTTCTTCCCTTAGAAGCTTGCATGGCATGGTATCTTCT  868

seq1  GGTACCATAAAGGCTAGTTTTTAGAGAGGAGGTTGCCTTCCTGGCTGGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCATAAAGGCTAGTTTTTAGAGAGGAGGTTGCCTTCCTGGCTGGTA  918

seq1  ACTTGTTGATGCCCATCTGGAGGCTGATGATGTAGTGTTATGTGAGTGGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTGATGCCCATCTGGAGGCTGATGATGTAGTGTTATGTGAGTGGC  968

seq1  AGGATGTGGTTCTTAGGGTCCCAGAAATGTTGCCTGATATCAAAGCTGTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGTGGTTCTTAGGGTCCCAGAAATGTTGCCTGATATCAAAGCTGTC  1018

seq1  ATACCAGGCTTCCTGGCACATTTGTTGGTGCTCACTTGTAGTGTGATGAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAGGCTTCCTGGCACATTTGTTGGTGCTCACTTGTAGTGTGATGAC  1068

seq1  AGACTAGCAGACCTTCATAGTTGTGACATTGATATTTTGATATTGCTTAT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAGCAGACCTTCATAGTTGTGACATTGATATTTTGATATTGCTTAT  1118

seq1  CTCTGCAGACGATCCAAATCTCCCTGCTATACTGAATTC  1189
      |||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCAGACGATCCAAATCTCCCTGCTATACTGAATTC  1157

seq1: chr10_104054118_104054363
seq2: B6Ng01-063N20.g_69_314 (reverse)

seq1  GAACCGCCAGACGGATTTCCAGAGTGGTTGTACAAGCCTGCAATCCCACC  50
      |||||||||||| |||||||||||||||||||||||| ||||||||||||
seq2  GAACCGCCAGACTGATTTCCAGAGTGGTTGTACAAGCTTGCAATCCCACC  50

seq1  AACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTG  100
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AACAATGGAGGAGTGTTCCCCTTTCTCCACATCCTCGCCAGCATCTGCTG  100

seq1  TCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCT  150
      |||||||| |||||||| ||||||||||||||||| ||||||||||||||
seq2  TCACCTGAGTTTTTGATGTTAGCCATTCTGACTGGAGTGAGGTGGAATCT  150

seq1  CAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAACATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAACATT  200

seq1  TTTTCAGGTGCTTCTCTGCCATTCGGTATTCCTCAGGTGAGAATTC  246
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGGTGCTTCTCTGCCATTCGGTATTCCTCAGGTGAGAATTC  246