BAC Information

Click to search

BAC

Clone NameB6Ng01-064C02
Chromosome10 (Build37)
Map Location 8,892,463 - 9,050,751
singlet/doubletdoublet
Overlap geneEG666625
Upstream geneUst, Sash1, LOC100039173
Downstream geneLOC666636, E130306M17Rik, LOC666658, LOC620417, Stxbp5, LOC100039238
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064C02.bB6Ng01-064C02.g
ACCDH884011DH884012
length1,1191,018
definitionDH884011|Mus musculus domesticus DNA, BAC clone: B6Ng01-064C02, 5' end.DH884012|Mus musculus domesticus DNA, BAC clone: B6Ng01-064C02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,892,463 - 8,893,466)(9,049,718 - 9,050,751)
sequence
gaattccaatttattattttccttttatacactgcacgcttggtgttaaa
tacaagagctcttggcatggtcctagatggtgaggatttttcttttaaat
ttagttttacattttccatgtaagttcttgatctatttttgtgttaacat
tttatggtgtgcaagacttaagtctgggttcatttttgtcacatgtggac
atccaactgcttcggcaccatttctggaaacagtgtctttactctactga
atgcctttgcacctttgtcaaaagtcaattgtacatgcctgtgtgagtct
ctttcaggctctctattctgatccattgatctgtgtgtctgggaccagat
atctttgccttcttgcggatcttagcaggaaagtattctgtgtctcacaa
tcaagtgcaaacttagctgaatgctttggtgggtgatctttatcaagttg
aagatattcctctccgtttctatcatcttcagaaactctttttaaaaaaa
atcaagacttggtcctcactttgcccgaaggcctttctgtatcaattgta
gtttttcttctcatgtaattttttttcttctttggcccaacaataaggtt
ggctgtattgagccttttctcctttgaataaacaactgaacttacttgtg
atatataactatttttagattattgagatcatttgttaatattttggtct
gaagttttgtgtaactatgataaacattgatttatagggtttttaaaatt
tatttgtctggttttaatatagagctaggttcataaaagttctcgagagg
tgtttcttcctcatattttctagaaaaatattttgggtttgccttcatgt
taattctttagaagctttgggttgcattcagccaatgagtattgatataa
ccttggtgaattggtggtgttaatccctttacctacattggctctctctc
cagttgtctaaggagagcgattatgtctcatgagtatgtcaacttgttga
catctcttgtcatctccagtttactttcatataattttttgactgtcaga
atcctctagctagaatcaactgtttctaccctggtagcgttactgggttg
gtaaaggaaagaaaagccc

gaattcaagcatccgcattagaagatacatatctagtgtttatatttata
catatacagacattcacctgtatatattcatacacacaagcatatatata
tatatatatatatatatatatatatatatatatatcttgccctatcatta
gggaaaaaatttaagataggtaattacaatttaagtaatttgcctaatac
agtacctaaaattgctatcagataaacatttcttgagaagatcaaaatat
atggttatttcccattttcccatttggatctctttcaatttgtgaagttt
attagcttggttcagtgtctttgagcattagtcaacatttaaagtgtagg
tttttatgattctgggggaagcaattgcttccaagggagaaaacactctg
taaattacatgtaaatgtttctacttggatgagttcttttgcatctgtgc
agaggatcattttaatttacacaggaatgaaagttctccatgactgaatg
tcgtaggcctgcttgtgtatctaatttcaacttcatttgtacccaagtct
agcagacacaaggggcattttgctctaatgtaagtgctgcttaaaaataa
aataaaattataataaaaagctgaggattactgtgccatttcaaggttta
tttcagaactgcccctcagagttggttggagcagatctgagtcacacaat
tctggcctatgttgctctaaagatgcaggccacaaagactgtaccctaag
aacaaacctcaagaaatgctcagaattccattgacttcggaacctcaaac
agcaccctcttcccctctcacaagtacagttcatagtggagtacatcctt
tatatatagaagactgttcatcactttcatttctttatctctgagatagc
tagacatttaaaaaagtattgaaaatcccaacatataaaggtatcgatta
attcggtttttctgttgcagcataaagtctctggagagtaccagctctat
tccattgtgagatcaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_8892463_8893466
seq2: B6Ng01-064C02.b_434_1156

seq1  TGTCTCACAATCAAGTGCAAACTTAGCTGAATGCTTTGGTGGGTGATCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCACAATCAAGTGCAAACTTAGCTGAATGCTTTGGTGGGTGATCTT  50

seq1  TATCAAGTTGAAGATATTCCTCTCCGTTTCTATCATCTTCAGAAACTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAGTTGAAGATATTCCTCTCCGTTTCTATCATCTTCAGAAACTCTT  100

seq1  TTTAAAAAAAATCAAGACTTGGTCCTCACTTTGCCCGAAGGCCTTTCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAAAATCAAGACTTGGTCCTCACTTTGCCCGAAGGCCTTTCTGT  150

seq1  ATCAATTGTAGTTTTTCTTCTCATGTAATTTTTTTTCTTCTTTGGCCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTGTAGTTTTTCTTCTCATGTAATTTTTTTTCTTCTTTGGCCCAA  200

seq1  CAATAAGGTTGGCTGTATTGAGCCTTTTCTCCTTTGAATAAACAACTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAGGTTGGCTGTATTGAGCCTTTTCTCCTTTGAATAAACAACTGAA  250

seq1  CTTACTTGTGATATATAACTATTTTTAGATTATTGAGATCATTTGTTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTGTGATATATAACTATTTTTAGATTATTGAGATCATTTGTTAAT  300

seq1  ATTTTGGTCTGAAGTTTTGTGTAACTATGATAAACATTGATTTATAGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGTCTGAAGTTTTGTGTAACTATGATAAACATTGATTTATAGGGT  350

seq1  TTTTAAAATTTATTTGTCTGGTTTTAATATAGAGCTAGGTTCATAAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAATTTATTTGTCTGGTTTTAATATAGAGCTAGGTTCATAAAAGT  400

seq1  TCTCGAGAGGTGTTTCTTCCTCATATTTTCTAGAAAAATATTTTGGG-TT  449
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCTCGAGAGGTGTTTCTTCCTCATATTTTCTAGAAAAATATTTTGGGTTT  450

seq1  GCCTTCATGTTAATTCTTTAGAAGCTTT-GGATGCATTCAGCCATTGAGT  498
      |||||||||||||||||||||||||||| || |||||||||||| |||||
seq2  GCCTTCATGTTAATTCTTTAGAAGCTTTGGGTTGCATTCAGCCAATGAGT  500

seq1  ATTGATATAACCTTGGTG-ACTGGTGGTGTTTATCCCTTTACCTACATTG  547
      |||||||||||||||||| | |||||||||| ||||||||||||||||||
seq2  ATTGATATAACCTTGGTGAATTGGTGGTGTTAATCCCTTTACCTACATTG  550

seq1  GCTCTCTCTCCAGTTGTTCTAAGGAGGAGCGATTATGTCTCCATGAGTAA  597
      |||||||||||||||| |||||||| |||||||||||||| ||||||| |
seq2  GCTCTCTCTCCAGTTG-TCTAAGGA-GAGCGATTATGTCT-CATGAGT-A  596

seq1  TGTCAACTTGTTGACATCTCTTGTCCATTCTCCCAGTTTTACTTTCATAT  647
      |||||||||||||||||||||||||   ||| |||| |||||||||||||
seq2  TGTCAACTTGTTGACATCTCTTGTC--ATCT-CCAG-TTTACTTTCATAT  642

seq1  -ATTTTTTGACTTGCAG-ATCCTCTAGCTAGAATCTACTGTTTCTACCCT  695
       |||||||||||  ||| ||||||||||||||||| ||||||||||||||
seq2  AATTTTTTGACTGTCAGAATCCTCTAGCTAGAATCAACTGTTTCTACCCT  692

seq1  GG-AGCGTTACTGGTGTGGTAAGGGAGAGGAGAAGCCTTTGATGATAAAT  744
      || |||||||||||  |||||| ||| || |                   
seq2  GGTAGCGTTACTGGGTTGGTAAAGGAAAGAA-------------------  723

seq1  AAATCATAGTTTATGGTGAGTATATGCCCTTAGCTGAGCTTTTACATGTA  794
                                                        
seq2  --------------------------------------------------  723

seq1  TTTGGTGACACAGAGAGACTAGCAGGGCTGAGATTTTCTGTTGGGTGTAA  844
                                                        
seq2  --------------------------------------------------  723

seq1  GAATCATGCAGTGCAGACATCAAAAGCCTTTGGCTCCTTTCTTGGGCTCT  894
                                                        
seq2  --------------------------------------------------  723

seq1  TGGATAAGAAGGCTTTAGTTGGGACAGTTTTGCTTCTGTTTCATTGTACC  944
                                                        
seq2  --------------------------------------------------  723

seq1  CACTGGCATTTCCGCACTGCTAACTTCACCAGTAATTATGAATAGAGGAG  994
                                                        
seq2  --------------------------------------------------  723

seq1  AAGGAAAGAA  1004
                
seq2  ----------  723


seq1: chr10_9049718_9050751
seq2: B6Ng01-064C02.g_67_1084 (reverse)

seq1  CCTTGAATCTCAACAAATGGAAATAGAGCTGGTTACTTCTCCAGAAGACT  50
      ||||| ||||||   ||||| ||||||||||| ||| ||||||| |||||
seq2  CCTTG-ATCTCA--CAATGG-AATAGAGCTGG-TAC-TCTCCAG-AGACT  43

seq1  TTAATGCTGCAAACAGAAAAACCTGAATTAATTGATACCTTTATAATGTT  100
      || ||||||| |||||||||||| |||||||| ||||||||||| ||| |
seq2  TT-ATGCTGC-AACAGAAAAACC-GAATTAATCGATACCTTTAT-ATG-T  88

seq1  TGGGATTTTTCAAATACTTTTTTTTAAATGTCTAGCTTATCTCAGAGATA  150
      |||||||||   |||||  ||||||||||||||||| |||||||||||||
seq2  TGGGATTTT--CAATAC--TTTTTTAAATGTCTAGC-TATCTCAGAGATA  133

seq1  AAGAAATGAAAGTGATTGAACAGTCTTCTATATATAAAGGATGTACTCCA  200
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAGAAATGAAAGTGA-TGAACAGTCTTCTATATATAAAGGATGTACTCCA  182

seq1  CTATGAACTGTACTTGTGAGAGGGGAAGAGGGTGCTGTTTGAGGTTCCGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAACTGTACTTGTGAGAGGGGAAGAGGGTGCTGTTTGAGGTTCCGA  232

seq1  AGTCAATGGAATTCTGAGCATTTCTTGAGGTTTGTTCTTAGGGTACAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAATGGAATTCTGAGCATTTCTTGAGGTTTGTTCTTAGGGTACAGTC  282

seq1  TTTGTGGCCTGCATCTTTAGAGCAACATAGGCCAGAATTGTGTGACTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGCCTGCATCTTTAGAGCAACATAGGCCAGAATTGTGTGACTCAG  332

seq1  ATCTGCTCCAACCAACTCTGAGGGGCAGTTCTGAAATAAACCTTGAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTCCAACCAACTCTGAGGGGCAGTTCTGAAATAAACCTTGAAATG  382

seq1  GCACAGTAATCCTCAGCTTTTTATTATAATTTTATTTTATTTTTAAGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGTAATCCTCAGCTTTTTATTATAATTTTATTTTATTTTTAAGCAG  432

seq1  CACTTACATTAGAGCAAAATGCCCCTTGTGTCTGCTAGACTTGGGTACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTACATTAGAGCAAAATGCCCCTTGTGTCTGCTAGACTTGGGTACAA  482

seq1  ATGAAGTTGAAATTAGATACACAAGCAGGCCTACGACATTCAGTCATGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTTGAAATTAGATACACAAGCAGGCCTACGACATTCAGTCATGGA  532

seq1  GAACTTTCATTCCTGTGTAAATTAAAATGATCCTCTGCACAGATGCAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTCATTCCTGTGTAAATTAAAATGATCCTCTGCACAGATGCAAAA  582

seq1  GAACTCATCCAAGTAGAAACATTTACATGTAATTTACAGAGTGTTTTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCATCCAAGTAGAAACATTTACATGTAATTTACAGAGTGTTTTCTC  632

seq1  CCTTGGAAGCAATTGCTTCCCCCAGAATCATAAAAACCTACACTTTAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGAAGCAATTGCTTCCCCCAGAATCATAAAAACCTACACTTTAAAT  682

seq1  GTTGACTAATGCTCAAAGACACTGAACCAAGCTAATAAACTTCACAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACTAATGCTCAAAGACACTGAACCAAGCTAATAAACTTCACAAATT  732

seq1  GAAAGAGATCCAAATGGGAAAATGGGAAATAACCATATATTTTGATCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGATCCAAATGGGAAAATGGGAAATAACCATATATTTTGATCTTC  782

seq1  TCAAGAAATGTTTATCTGATAGCAATTTTAGGTACTGTATTAGGCAAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAAATGTTTATCTGATAGCAATTTTAGGTACTGTATTAGGCAAATT  832

seq1  ACTTAAATTGTAATTACCTATCTTAAATTTTTTCCCTAATGATAGGGCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAATTGTAATTACCTATCTTAAATTTTTTCCCTAATGATAGGGCAA  882

seq1  G--ATATATATATATATATATATATATATATATATATATATATATGCTTG  948
      |  |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATATATATATATATATATATATATATATATATATATATATGCTTG  932

seq1  TGTGTATGAATATATACAGGTGAATGTCTGTATATGTATAAATATAAACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATGAATATATACAGGTGAATGTCTGTATATGTATAAATATAAACA  982

seq1  CTAGATATGTATCTTCTAATGCGGATGCTTGAATTC  1034
      ||||||||||||||||||||||||||||||||||||
seq2  CTAGATATGTATCTTCTAATGCGGATGCTTGAATTC  1018


| Home | SequenceCutter | Blast | Download |