BAC Information

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BAC

Clone NameB6Ng01-064J02
Chromosome10 (Build37)
Map Location 18,282,498 - 18,411,246
singlet/doubletdoublet
Overlap geneEG627729, D10Bwg1379e
Upstream geneCited2, Txlnb, LOC665321, Heca, 3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646, Nhsl1, Hebp2
Downstream geneEG237300, Perp, Tnfaip3, Tpi-rs5, EG637620, Olig3, Ifngr1, Il22ra2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064J02.bB6Ng01-064J02.g
ACCDH884315DH884316
length942696
definitionDH884315|Mus musculus domesticus DNA, BAC clone: B6Ng01-064J02, 5' end.DH884316|Mus musculus domesticus DNA, BAC clone: B6Ng01-064J02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,410,305 - 18,411,246)(18,282,498 - 18,283,191)
sequence
gaattcagtctgaggggaagtctattcttttttttttttggctttttgag
acagggtttctctggctgtcctggaactcactctgtagaccaggctggcc
tcaaactcagaaatccacctgcctctgcctcccaagtgctaggattaaag
gcgtgcgccaccacattctcttgtctgctaagtctcccctgacggatctg
caggtgggagacatgactgtccccattgtgtagatggttgaagagaaact
ttaaaatacaccagttacaatgggggaaagctaggagttgctgagactta
tgttgtcgttatccccctagagtaataatctgtccttgctcactctatga
aattcaaattggattttgtaatcttgccaatcaagctctaacaacaccac
agaaaggtgtcatggacaacctctgacaatagcacaataatatgtcatgc
agtttttataagcattgggtttttccaatggcattgagccattgaagaaa
acacaactaatgccattagatgtgtgtttgaagaagggaagggaatagca
tctaccatcaagtgtttttatatgacaaacgcctgcctgactcaaccagc
tcagttagaaaagtcctggacatggaacctgtgtacagtttggctggcag
gtctgagacttggattgtgcgcttggaaatctgttgttagaaagcaggta
aagtatgtttcttaatgcgcaccaacactacagtcaacccttgtggtgaa
agaagaaaaacagactacacaaaaggaccatttttgttttttattttcct
ttttgcagagctgaagatgaaacttctagagctttgtacatactagacac
acactctctatccctgagctaatacccccagcccaaaaggattatgttgt
ttcatctcaataatatttttgtgtgtgtgtgtgtgcatgtgt
gaattcattcacattatttctccatattatttgcaccttgcccctgtggg
ccaagtttccctaaagaaaaaagaatgaagaaactggtaatgatatgaaa
gaaaagggcctgagtaagacagagaaacaggttagtgtatccatttcggg
acacttgaaaattggagaatatggaatacgtttaggtgctcaacaatcta
ttccactgtcaaagtgttgccttcacttacgtgtgtagtttattgaaacc
ataggaggggagctgtgaggtagaagaagtaaaaactgttaggactcaca
gacagacttgtgtcttttggagaaagtaaatgaggatatttgtgggaaca
cgagtgggaaggttggtttggtatgatcaggtgtttagatttaacgtccg
tggaggtgggatgtgattctccaattcaagcaagggcctgcaggtggcac
tatttcccaagtcaggatacatggatgcacagcctatactctgtgtaaaa
gatgtttaaagagttttgttggtgaatatcctcctttcctaaaagtaaac
ggtggattaggagactaaaagccttagaggtatccatcaaaatgtgacct
tcctattgttgacttctttctgcaaggtgaaagaccatttttttaaacaa
ggcagaggttctattgcgaggtgggtttttgttgttgttgtttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_18410305_18411246
seq2: B6Ng01-064J02.b_47_988 (reverse)

seq1  ACACATGCACACACACACACACAAAAATATTATTGAGATGAAACAAACAT  50
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACACATGCACACACACACACACAAAAATATTATTGAGATGAAAC-AACAT  49

seq1  AATCCTTTTGGGCTGGGGGTA-TAGCTCAGGGATAGAGAGTGTGTGTCTA  99
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AATCCTTTTGGGCTGGGGGTATTAGCTCAGGGATAGAGAGTGTGTGTCTA  99

seq1  GTATGTACAAAGCTCTAGAAGTTTCATCTTCAGCTCTGCAAAAAGGAAAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTACAAAGCTCTAGAAGTTTCATCTTCAGCTCTGCAAAAAGGAAAA  149

seq1  TAAAAAACAAAAATGGTCCTTTTGTGTAGTCTGTTTTTCTTCTTTCACCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAACAAAAATGGTCCTTTTGTGTAGTCTGTTTTTCTTCTTTCACCA  199

seq1  CAAGGGTTGACTGTAGTGTTGGTGCGCATTAAGAAACATACTTTACCTGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGTTGACTGTAGTGTTGGTGCGCATTAAGAAACATACTTTACCTGC  249

seq1  TTTCTAACAACAGATTTCCAAGCGCACAATCCAAGTCTCAGACCTGCCAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAACAACAGATTTCCAAGCGCACAATCCAAGTCTCAGACCTGCCAG  299

seq1  CCAAACTGTACACAGGTTCCATGTCCAGGACTTTTCTAACTGAGCTGGTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTGTACACAGGTTCCATGTCCAGGACTTTTCTAACTGAGCTGGTT  349

seq1  GAGTCAGGCAGGCGTTTGTCATATAAAAACACTTGATGGTAGATGCTATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGGCAGGCGTTTGTCATATAAAAACACTTGATGGTAGATGCTATT  399

seq1  CCCTTCCCTTCTTCAAACACACATCTAATGGCATTAGTTGTGTTTTCTTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCCTTCTTCAAACACACATCTAATGGCATTAGTTGTGTTTTCTTC  449

seq1  AATGGCTCAATGCCATTGGAAAAACCCAATGCTTATAAAAACTGCATGAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTCAATGCCATTGGAAAAACCCAATGCTTATAAAAACTGCATGAC  499

seq1  ATATTATTGTGCTATTGTCAGAGGTTGTCCATGACACCTTTCTGTGGTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATTGTGCTATTGTCAGAGGTTGTCCATGACACCTTTCTGTGGTGT  549

seq1  TGTTAGAGCTTGATTGGCAAGATTACAAAATCCAATTTGAATTTCATAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGAGCTTGATTGGCAAGATTACAAAATCCAATTTGAATTTCATAGA  599

seq1  GTGAGCAAGGACAGATTATTACTCTAGGGGGATAACGACAACATAAGTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCAAGGACAGATTATTACTCTAGGGGGATAACGACAACATAAGTCT  649

seq1  CAGCAACTCCTAGCTTTCCCCCATTGTAACTGGTGTATTTTAAAGTTTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACTCCTAGCTTTCCCCCATTGTAACTGGTGTATTTTAAAGTTTCT  699

seq1  CTTCAACCATCTACACAATGGGGACAGTCATGTCTCCCACCTGCAGATCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACCATCTACACAATGGGGACAGTCATGTCTCCCACCTGCAGATCC  749

seq1  GTCAGGGGAGACTTAGCAGACAAGAGAATGTGGTGGCGCACGCCTTTAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGGGAGACTTAGCAGACAAGAGAATGTGGTGGCGCACGCCTTTAAT  799

seq1  CCTAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGC  849

seq1  CTGGTCTACAGAGTGAGTTCCAGGACAGCCAGAGAAACCCTGTCTCAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTACAGAGTGAGTTCCAGGACAGCCAGAGAAACCCTGTCTCAAAA  899

seq1  AGCCAAAAAAAAAAAAGAATAGACTTCCCCTCAGACTGAATTC  942
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAAAAAAAAAAAGAATAGACTTCCCCTCAGACTGAATTC  942

seq1: chr10_18282498_18283191
seq2: B6Ng01-064J02.g_66_761

seq1  GAATTCATTCACATTATTTCTCCATATTATTTGCACCTTGCCCCTGTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCACATTATTTCTCCATATTATTTGCACCTTGCCCCTGTGGG  50

seq1  CCAAGTTTCCCTAAAGAAAAAAGAATGAAGAAACTGGTAATGATATGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTTTCCCTAAAGAAAAAAGAATGAAGAAACTGGTAATGATATGAAA  100

seq1  GAAAAGGGCCTGAGTAAGACAGAGAAACAGGTTAGTGTATCCATTTCGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGGCCTGAGTAAGACAGAGAAACAGGTTAGTGTATCCATTTCGGG  150

seq1  ACACTTGAAAATTGGAGAATATGGAATACGTTTAGGTGCTCAACAATCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGAAAATTGGAGAATATGGAATACGTTTAGGTGCTCAACAATCTA  200

seq1  TTCCACTGTCAAAGTGTTGCCTTCACTTACGTGTGTAGTTTATTGAAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTGTCAAAGTGTTGCCTTCACTTACGTGTGTAGTTTATTGAAACC  250

seq1  ATAGGAGGGGAGCTGTGAGGTAGAAGAAGTAAAAACTGTTAGGACTCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAGGGGAGCTGTGAGGTAGAAGAAGTAAAAACTGTTAGGACTCACA  300

seq1  GACAGACTTGTGTCTTTTGGAGAAAGTAAATGAGGATATTTGTGGGAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACTTGTGTCTTTTGGAGAAAGTAAATGAGGATATTTGTGGGAACA  350

seq1  CGAGTGGGAAGGTTGGTTTGGTATGATCAGGTGTTTAGATTTAACGTCCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTGGGAAGGTTGGTTTGGTATGATCAGGTGTTTAGATTTAACGTCCG  400

seq1  TGGAGGTGGGATGTGATTCTCCAATTCAAGCAAGGGCCTGCAGGTGGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTGGGATGTGATTCTCCAATTCAAGCAAGGGCCTGCAGGTGGCAC  450

seq1  TATTTCCCAAGTCAGGATACATGGATGCACAGCCTATACTCTGTGTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCCAAGTCAGGATACATGGATGCACAGCCTATACTCTGTGTAAAA  500

seq1  GATGTTTAAAGAGTTTTGTTGGTGAATATCCTCCTTTCCTAAAAGTAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTAAAGAGTTTTGTTGGTGAATATCCTCCTTTCCTAAAAGTAAAC  550

seq1  GGTGGATTAGGAGACTAAAAGCCTTAGAGGTATCCATCAAAATGTGACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGATTAGGAGACTAAAAGCCTTAGAGGTATCCATCAAAATGTGACCT  600

seq1  TCCTATTGTTGACTTCTTTCTGCAAGGTGAAAGACCA-TTTTTTAAACAA  649
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCCTATTGTTGACTTCTTTCTGCAAGGTGAAAGACCATTTTTTTAAACAA  650

seq1  GGCAGAGGTTCTATTGCGAGGTGGG-TTTTGTTGTTGTTGTTTTTT  694
      ||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGCAGAGGTTCTATTGCGAGGTGGGTTTTTGTTGTTGTTGTTTTTT  696