BAC Information

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BAC

Clone NameB6Ng01-064J11
Chromosome14 (Build37)10 (Build37)
Map Location 100,271,848 - 100,272,755104,053,560 - 104,054,363
singlet/doubletsingletsinglet
Overlap geneKlf12
Upstream geneLOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671, LOC668672, EG546623
Downstream geneLOC100043413, EG668683, EG668684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064J11.bB6Ng01-064J11.g
ACCDH884333DH884334
length918985
definitionDH884333|Mus musculus domesticus DNA, BAC clone: B6Ng01-064J11, 5' end.DH884334|Mus musculus domesticus DNA, BAC clone: B6Ng01-064J11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(100,271,848 - 100,272,755)(104,053,560 - 104,054,363)
sequence
gaattctccctgtaaaactggcaagatgctttctcagtggagaaaggact
ggctcctacgagagcagacagaactaagccaaccgtgtacttgacttgag
cgacttccttacgacctatcaattaggctctagggccagcgcctggggga
tcctgcttgtttgccactgtcagggttctttgccctggccagttactaat
gctggcgtgcatcaggaaacctggttttattctggatgattacaggcaat
gagaagtaggaagtgcatacagtacagatttaaaaatgttccagttggta
tatatataaaaaaataacaacaaaaagcaataaccaaaaaatcctgctgg
ctggtgggtaccaacctgtgtagctgaagctatttatcaatagaactaca
gcccttggaggagggaaattgcctgatgaagtttttatacctggcagaaa
atgtagagcacagatctctgaagctgggacttgacctgtaaatcatgcta
cttttgcctgaacagttattaaaagtctttttcaaagctacccgacacaa
atggttctccttgtaatgttcatagctcttgctttgtcagaatacaatta
tcctgattagaagctgatactaggaaggataactgtcaccagaaatcatt
ttagaatgtgcagacattcaaaactgagctaggaaccctatgaggttgat
ttgtgcagtttcccaaatcaagtgtgtcattgaaatatattgcaaaggcc
ttcactggagacctttaatatttaagctataaaatgtcttaacaacaaaa
atctcaccaaacccaatttgccacagaaagctgggaaaacagcagctttc
agtggtgacagactattttggaagagtgcttgttggggggttggggggat
atattgccttccgggaca
gaattctcaccctgaggaataccaaatggcagagaagcacctgaaaaaat
gttcaacatccttaatcatcagggaaatgcaaaccaaaacaaccctgaga
ttccacctcacaccagtcagaatgactaagatcaaaaattcaggtgacag
cagatgctggcgaggatgtggagaaagaggaacactcttccattgttggt
gggattgcaagcttgtacaaccactctgaaaatcagtctggcggttcctc
agaaaattggacatagtactaccagacgatcccgcaatacctctcctggg
catatatccagaagatgttccaactggtaagaaggacacatgctctacta
tgttcatagcagccttatttataatatccaaaagctggaaagagcccaga
tgccccttaacaaaggaatggatacagaaaatgtggtacacttacacaat
ggagtactactcagctatttaaaagaatgaatttatgaaattcctaggca
aatggatggacctggagggcatcatcctgagtgaggtaccacaatcacaa
acgaactcacacgatatgtactcactaaaggtggatattagcttaatttc
ttcttaattttgagtttgcagggatcaaaaatttgactgtttaaaaccca
tcggagagcattaatattaaggatattaataattgccagtagatgcatta
aaaatatttaatctattttagacatgaaagcttttccatatcaaaattac
ttaaattagacgcatgctttattttcatggtaatgttaaactagggattc
tgttaattatattgtctattctttctaaaagcatgaaacttattttcctt
ttaaataggtcatagtagtttctatcccatgattcttcatctaaattttt
tattaaaatacaacaacagagaaaccaatccaaatgaggaaacctttaga
ctttagatagccagatctggaccttgagaaatatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_100271848_100272755
seq2: B6Ng01-064J11.b_44_950

seq1  GAATTCTCCCTGTAAAACTGGCAAGATGCTTTCTCAGTGGAGAAAGGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCTGTAAAACTGGCAAGATGCTTTCTCAGTGGAGAAAGGACT  50

seq1  GGCTCCTACGAGAGCAGACAGAACTAAGCCAACCGTGTACTTGACTTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTACGAGAGCAGACAGAACTAAGCCAACCGTGTACTTGACTTGAG  100

seq1  CGACTTCCTTACGACCTATCAATTAGGCTCTAGGGCCAGCGCCTGGGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTTCCTTACGACCTATCAATTAGGCTCTAGGGCCAGCGCCTGGGGGA  150

seq1  TCCTGCTTGTTTGCCACTGTCAGGGTTCTTTGCCCTGGCCAGTTACTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTTGTTTGCCACTGTCAGGGTTCTTTGCCCTGGCCAGTTACTAAT  200

seq1  GCTGGCGTGCATCAGGAAACCTGGTTTTATTCTGGATGATTACAGGCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCGTGCATCAGGAAACCTGGTTTTATTCTGGATGATTACAGGCAAT  250

seq1  GAGAAGTAGGAAGTGCATACAGTACAGATTTAAAAATGTTCCAGTTGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTAGGAAGTGCATACAGTACAGATTTAAAAATGTTCCAGTTGGTA  300

seq1  TATATATAAAAAAATAACAACAAAAAGCAATAACCAAAAAATCCTGCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATAAAAAAATAACAACAAAAAGCAATAACCAAAAAATCCTGCTGG  350

seq1  CTGGTGGGTACCAACCTGTGTAGCTGAAGCTATTTATCAATAGAACTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGGGTACCAACCTGTGTAGCTGAAGCTATTTATCAATAGAACTACA  400

seq1  GCCCTTGGAGGAGGGAAATTGCCTGATGAAGTTTTTATACCTGGCAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTGGAGGAGGGAAATTGCCTGATGAAGTTTTTATACCTGGCAGAAA  450

seq1  ATGTAGAGCACAGATCTCTGAAGCTGGGACTTGACCTGTAAATCATGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAGCACAGATCTCTGAAGCTGGGACTTGACCTGTAAATCATGCTA  500

seq1  CTTTTGCCTGAACAGTTATTAAAAGTCTTTTTCAAAGCTACCCGACACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCCTGAACAGTTATTAAAAGTCTTTTTCAAAGCTACCCGACACAA  550

seq1  ATGGTTCTCCTTGTAATGTTCATAGCTCTTGCTTTGTCAGAATACAATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTCTCCTTGTAATGTTCATAGCTCTTGCTTTGTCAGAATACAATTA  600

seq1  TCCTGATTAGAAGCTGATACTAGGAAGGATAACTGTCACCAGAAATCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATTAGAAGCTGATACTAGGAAGGATAACTGTCACCAGAAATCATT  650

seq1  TTAGAATGTGCAGACATTCAAAACTGAGCTAGGAACCCTATGAGGTTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATGTGCAGACATTCAAAACTGAGCTAGGAACCCTATGAGGTTGAT  700

seq1  TTGTGCAGTTTCCCAAATCAAGTGTGTCATTGAAATATATTGCAAAGGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCAGTTTCCCAAATCAAGTGTGTCATTGAAATATATTGCAAAGGCC  750

seq1  TTCACTGGAGACCTTTAATATTTAAGCTATAAAATGTCTTAACAACAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGGAGACCTTTAATATTTAAGCTATAAAATGTCTTAACAACAAAA  800

seq1  ATCTCACCAAACCCAATTTGCCACAGAAAGCTGGGAAAACAGCAGCTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACCAAACCCAATTTGCCACAGAAAGCTGGGAAAACAGCAGCTTTC  850

seq1  AGTGGTGACAGACTATTTTGGAAAGAGTGCTTGTTGGGGGGTTGGGGGGA  900
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGTGGTGACAGACTATTTTGG-AAGAGTGCTTGTTGGGGGGTTGGGGGGA  899

seq1  TATATTGC  908
      ||||||||
seq2  TATATTGC  907

seq1: chr10_104053560_104054363
seq2: B6Ng01-064J11.g_68_659 (reverse)

seq1  GCTAATATCCACTTATCAGTGAGTACATATTGCGCGAGTTCCTTTGTGAT  50
      |||||||||||| | | ||||||||||||| | | |||||| ||||||||
seq2  GCTAATATCCACCT-TTAGTGAGTACATATCGTGTGAGTTCGTTTGTGAT  49

seq1  TGGGTTACCGCACTCAGGATGATACTCTCCAGGTCCATCCATTTGCCTAG  100
      || | |||| ||||||||||||| | ||||||||||||||||||||||||
seq2  TGTGGTACCTCACTCAGGATGATGCCCTCCAGGTCCATCCATTTGCCTAG  99

seq1  GAATTTCATAAATTCATTCTTTTTAATAGCTCCATTTACATTTAATTTAA  150
      ||||||||||||||||||||||| ||||||                    
seq2  GAATTTCATAAATTCATTCTTTTAAATAGC--------------------  129

seq1  TTAATGTAATTACAATTAATTAATTTATTAATTAAATAATTTAATAATTT  200
                                                        
seq2  --------------------------------------------------  129

seq1  AATTGATAAATTAATTTAATTAATTAATTTAATTAATTAAATTAAATAAT  250
                                                        
seq2  --------------------------------------------------  129

seq1  AATTTAATAATAAATTAAATATTTTAAAATTAATAATAATTTTATAAGTA  300
                                                  | ||||
seq2  --------------------------------------------TGAGTA  135

seq1  AATAATTTAATTAATGTAATTTAATTAATGTAATTACATTACATTTAATA  350
                                   |||                  
seq2  -----------------------------GTA------------------  138

seq1  GCTCCATTGTGTAAATGTACCACATTTTCTGTATCTATTCCTCTGTTGAG  400
       ||||||||||||| |||||||||||||||||||| |||||| |||| ||
seq2  -CTCCATTGTGTAAGTGTACCACATTTTCTGTATCCATTCCTTTGTTAAG  187

seq1  GGGCATCTGGGTTCTTTCCAGCTCCTGGCTATTATAAATAAGGCTGCTAT  450
      ||||||||||| |||||||||||  ||| |||||||||||||||||||||
seq2  GGGCATCTGGGCTCTTTCCAGCTTTTGGATATTATAAATAAGGCTGCTAT  237

seq1  GAATATAGTGGAGCATGTGTCCTTCTTACCGGTTGGGGCATCTTCTGGAT  500
      ||| ||||| |||||||||||||||||||| |||||  ||||||||||||
seq2  GAACATAGTAGAGCATGTGTCCTTCTTACCAGTTGGAACATCTTCTGGAT  287

seq1  ATATGCCCAGAAGAGGTATTGCTGGATCCTCCGGTAGTACTATGTCCAAT  550
      |||||||||| ||||||||||| ||||| || ||||||||||||||||||
seq2  ATATGCCCAGGAGAGGTATTGCGGGATCGTCTGGTAGTACTATGTCCAAT  337

seq1  TTTCTGACGAACCGCCAGACGGATTTCCAGAGTGGTTGTACAAGCCTGCA  600
      ||||||| |||||||||||| ||||| |||||||||||||||||| ||||
seq2  TTTCTGAGGAACCGCCAGACTGATTTTCAGAGTGGTTGTACAAGCTTGCA  387

seq1  ATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGC  650
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATCCCACCAACAATGGAAGAGTGTTCCTCTTTCTCCACATCCTCGCCAGC  437

seq1  ATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGG  700
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATCTGCTGTCACCTGAATTTTTGATCTTAGTCATTCTGACTGGTGTGAGG  487

seq1  TGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGT  750
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGGAATCTCAGGGTTGTTTTGGTTTGCATTTCCCTGATGATTAAGGATGT  537

seq1  TGAACATTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCCTCA-GGTGAG  799
      ||||||||||||||||||||||||||||||| ||||||||||| ||||||
seq2  TGAACATTTTTTCAGGTGCTTCTCTGCCATTTGGTATTCCTCAGGGTGAG  587

seq1  AATTC  804
      |||||
seq2  AATTC  592