BAC Information

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BAC

Clone NameB6Ng01-065F07
Chromosome10 (Build37)10 (Build37)
Map Location 104,053,903 - 104,054,36318,479,172 - 18,479,654
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065F07.bB6Ng01-065F07.g
ACCDH884836DH884837
length471983
definitionDH884836|Mus musculus domesticus DNA, BAC clone: B6Ng01-065F07, 5' end.DH884837|Mus musculus domesticus DNA, BAC clone: B6Ng01-065F07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,903 - 104,054,363)(18,479,172 - 18,479,654)
sequence
gaattctcacctgaggaacactgaacggcagagaagcacctgaaaaaatg
ttcaacatccttaataatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atttatccagatgatgccccaactggtaagaaggacacatgctccactat
gttcatagcagctttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatgggtacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaa
gaattctcatgttgggagccattaagacaacacaattgtcctgatctctg
aattgggcctctccaagaagaaaagggggtcaaaagcgggccaccaacgt
actgctccaagaacaaccacagattgttccagccctaagtcagcaccgga
tgtcctgacctcaagatgtacccagataccaccaagttcctgcttctccc
tgtagctgccaaaagaaaaatttctgctgcccctttcctcctgctgagaa
gtacttcctctttttcaggtgccccatccctcctgctgaggtgcatttct
ggtgccccattcctcctgctgagaagtacttccccttttgcttgtgcatt
taagccttgagccttgctaatatagtgagaccttgatgctactcagactg
cttccatgtgtcgttcattgcacaaggttctcgtctctctaacccccatt
tggttcttaggagaagtcccctggagaccctcgaataactggacctgctg
gacgggtcattctcaactaaggaatactgaagggctgagaagcacttgaa
aaaatgttcaacatccataatcatcaaggaattgcaaatcaaaacaaccc
tgatattccacgtcacaccagtaagaatagctaggattcaaaattcaggt
gacagcagatactggcgaggatgtggagaaagagaaacacttcctcattg
ttggtgggattgcaagctgttaaaccactctggaaatcagtctggtgttc
ctcagaaaactggacatagtactatgggaagatccagtaattcctctcct
gggcatatacccagagatgttccaactgttaataagaacacatgctccag
ttttattcaaagcagccttatttataataaccagaagctggaaaaaccat
atgtcttcaacagaggatgatgcagaaatgtgtacattaacacatggagt
actactcagctattaaacatgatttatgaaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053903_104054363
seq2: B6Ng01-065F07.b_44_514 (reverse)

seq1  TTTAATAG----------CTCCATTGTGTAAATGTACCACATTTTCTGTA  40
      ||||||||          |||||||||||| |||||||||||||||||||
seq2  TTTAATAGCTGAGTAGTACTCCATTGTGTAGATGTACCACATTTTCTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
       | ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      |||||||| ||||||||||| |||||||||||||||||||||||||| ||
seq2  ATAAATAAAGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCAGT  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      ||||||||| |||||||| |||||||| ||||||||||||||||||||||
seq2  TGGGGCATCATCTGGATAAATGCCCAGGAGAGGTATTGCTGGATCCTCCG  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      |||||||||||||||||||||||| |||||||||||| ||||||||||||
seq2  GTAGTACTATGTCCAATTTTCTGAGGAACCGCCAGACTGATTTCCAGAGT  250

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  300

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATCCACGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  350

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  400

seq1  CTGATGATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCG  440
      ||||| ||||||||||||||||||||||||||||||||||||||| ||| 
seq2  CTGATTATTAAGGATGTTGAACATTTTTTCAGGTGCTTCTCTGCCGTTCA  450

seq1  GTATTCCTCAGGTGAGAATTC  461
      || ||||||||||||||||||
seq2  GTGTTCCTCAGGTGAGAATTC  471

seq1: chr10_18479172_18479654
seq2: B6Ng01-065F07.g_76_415 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  TGCACAAGCAAAAGGGGAAGTACTTCTCAGCAGGAGGAATGGGGCACCAG  50

seq1  -------------------------TGCACAAGGAAAAGGGGAAGTACAG  25
                                ||||  | ||||| ||||      
seq2  AAATGCACCTCAGCAGGAGGGATGGGGCACCTGAAAAAGAGGAA------  94

seq1  GTACTTATCAGCGGGAGGGGTGGGGCAATAGAATTGCACTTTCTTTAGGC  75
      |||||| ||||| |||||   ||||||  |||| |    ||||||| |||
seq2  GTACTTCTCAGCAGGAGGAAAGGGGCAGCAGAAAT---TTTTCTTTTGGC  141

seq1  AGTTACATGGGGAAGCAGGAACTTGGCGGTATCAGGG-------TGTGGT  118
      || |||| || ||||||||||||||| |||||| |||       || |||
seq2  AGCTACAGGGAGAAGCAGGAACTTGGTGGTATCTGGGTACATCTTGAGGT  191

seq1  CAGGACATCC-GCGATGACTTAGGGCTGGAACATTCTGTGGTTGTTCTCG  167
      |||||||||| | | |||||||||||||||||| |||||||||||||| |
seq2  CAGGACATCCGGTGCTGACTTAGGGCTGGAACAATCTGTGGTTGTTCTTG  241

seq1  GAACAGTGTG-TCATGGCCCGCTTTTGACCCCCTTTTCTTCTTGGGGTAG  216
      || ||||  | |  |||||||||||||||||||||||||||||||   ||
seq2  GAGCAGTACGTTGGTGGCCCGCTTTTGACCCCCTTTTCTTCTTGG---AG  288

seq1  AGGCCCAATTCAGAGATCAGGACAATTGTGTTATCTTTTTTTTTTTTTTT  266
      |||||||||||||||||||||||||||||||| ||      ||  |   |
seq2  AGGCCCAATTCAGAGATCAGGACAATTGTGTTGTC------TTAATGGCT  332

seq1  TTAAAGATTTATTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCC  316
         || ||                                          
seq2  CCCAACAT------------------------------------------  340

seq1  TCAGACACTCCAGAAGAGGGCGTCAGATCTCGTTACGGATGGTTGTGAGC  366
                                                        
seq2  --------------------------------------------------  340

seq1  CACCATGTGGTTGCTGGGATTTGAACTTCGGACCTTTGGAAGAGCAGTCG  416
                                                        
seq2  --------------------------------------------------  340

seq1  GGTGCTCTTACCCACTGAGCCATCTCACCAGCCCCCCCAATTGTGTTATC  466
                                                        
seq2  --------------------------------------------------  340

seq1  TTAATGGCTCCCAACAT  483
                       
seq2  -----------------  340