BAC Information

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BAC

Clone NameB6Ng01-065N08
Chromosome10 (Build37)9 (Build37)
Map Location 107,621,034 - 107,621,768121,798,381 - 121,799,171
singlet/doubletsingletsinglet
Overlap genePpp1r12a
Upstream geneLin7a, Myf5, Myf6, Ptprq, EG628870
Downstream genePawr, EG667814, Syt1, EG368203
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065N08.bB6Ng01-065N08.g
ACCDH885192DH885193
length1,075805
definitionDH885192|Mus musculus domesticus DNA, BAC clone: B6Ng01-065N08, 5' end.DH885193|Mus musculus domesticus DNA, BAC clone: B6Ng01-065N08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(107,621,034 - 107,621,768)(121,798,381 - 121,799,171)
sequence
gaattcactcctaaaaaccagtgcttcctttatgggacttagtctggcca
ggtggagccaagcaagcctttaattccagcacccaggagccagaggcagg
cagatctctgtgagttccaggccagccagggctgcatagtgagactctac
ctcaaacacccaaacctccccctgctcgtgggaaacttttcctcccactg
gggccttgttcagccttggaatgagggtatacgccagtcttatggcatct
cgctatgccatgctcagtgactatccctgggaaacctgttcttttctaaa
aggaatctgaggggcagtggatcagggagagggggtagatggtgggaggc
cagcaatgttactgaaaacaagcaaacaaacaaagcaagctcacaatgaa
tgtataaagcctagtacagacagattaggttcagtttcctctgtttacct
agcattgatcttccattctagtttatagcgcttaatttaccaaacatttt
tttaaaaaatggagccttaagtaacagtacataggtatgggtgaggtcct
tgtgcttaaacaatgtgaaaattctttttcagttctatagtaatctttcc
cgcccctcactttatatttaatattttacataaagtttcgaaccctggaa
gaaagtttttagaggaactacagcctataaaatctaaaggagataaccaa
ggaatataaaaactgacttctggaaaaaaagaaaaaaaaaacaaatctaa
taaacgtcgttacccttcctttctttacaagaacgggacttagaaaccca
catgaagctatctttccagctgatttcagaagccctatgggagaaatact
cacacaatgaacaccttcccactattccctctctccctctacagccagac
taagcatcctcctgcctcagccacccgtgagctaagatcacaggcatgtc
cacccttcccggaacactgcattattattttttactacaaatctacaggt
aggctacctttccggacacgagacaaacagaaggatgtaaaagagccggt
ttacaatggtagttatggttacagc
gaattccaaggatcctgggctacacagtgatgacctggttctcaggtcag
tcaacattgtctgcaagagagagagaatgtggggactgaggggcaagaga
tgcgaagaatggagacaacacaggctatctgctcaagtctcaagtccttt
ttattggaaggcaactatgggtatatatgcactcgctggggagtgcagct
ggagacaatcacaggtccaggatgtataggagaaaaacaagatgttatca
gagtgtgttcagctatggtgggcttcttgcagaaacatcatgctaggaaa
aacaagtctctcgtcgggtggaaaagttccacctgtaagtaaatagccca
agatggctgcagagatgagagctgctttctgctaagagtcggctcccaac
acaatgagctcctgtttcaaaagctaatattaccagcatgcagcaccaca
cttggctttttacctgagtgtgcttgtatgggaaatactgtccgagacat
ctccacagccccagggacagcaggactgtgccaaggctgagtctctctct
ctctctctttttttgtttgttttttattgtgaagggaattggctgcctat
gtgaagacctggagtggggcatagaccagcatatttttattatcatgtgc
cctggggggataacatcaagctgcagttttactattccttcagaagctgg
ggttaagatgactgagtgtttaagtttccagaagtcacacggagattggt
taaagaaattcaaacagggtcacaccacacatggtggcatgaaagcttgt
cacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_107621034_107621768
seq2: B6Ng01-065N08.b_392_1117 (reverse)

seq1  GCTGTATACATAACTAACATTTGTAAACCGGCCTCTTTTACATCCCTCTG  50
      ||||||  |||||||| || ||||||||||| ||||||||||||| ||||
seq2  GCTGTAACCATAACTACCA-TTGTAAACCGG-CTCTTTTACATCCTTCTG  48

seq1  TTTGTCCTCGTGTACGTGAAAGGTAAGCTACCTGTAGATTTGTAAGTAAT  100
      ||||| ||||||| || ||||||||  |||||||||||||||| ||||| 
seq2  TTTGT-CTCGTGTCCG-GAAAGGTAGCCTACCTGTAGATTTGT-AGTAA-  94

seq1  AAAATAATAATGCAGTTGTTACCGGGAAGGGTGGACATGCCTGTGATCCT  150
      ||||||||||||||| |||| ||||||||||||||||||||||||||| |
seq2  AAAATAATAATGCAG-TGTT-CCGGGAAGGGTGGACATGCCTGTGATCTT  142

seq1  AGCTCACGTGTGGCTGAGGCAGGAGGATGCTTAGTCTGGGCTGTAGAGGG  200
      |||||||| |||||||||||||||||||||||||||| ||||||||||||
seq2  AGCTCACGGGTGGCTGAGGCAGGAGGATGCTTAGTCT-GGCTGTAGAGGG  191

seq1  AGAGAGGGAATAGTGGGAAGGTGTTCATTGTGTGAGTACTTCTCCCATAG  250
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGAGAGGGAATAGTGGGAAGGTGTTCATTGTGTGAGTATTTCTCCCATAG  241

seq1  GGCTTCTGAAATCAGCTGGAAAGATAGCTTCATGTGGGTTTCTAAGTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTGAAATCAGCTGGAAAGATAGCTTCATGTGGGTTTCTAAGTCCC  291

seq1  GTTCTTGTAAAGAAAGGAAGGGTAACGACGTTTATTAGATTTGTTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGTAAAGAAAGGAAGGGTAACGACGTTTATTAGATTTGTTTTTTT  341

seq1  TTTCTTTTTTTCCAGAAGTCAGTTTTTATATTCCTTGGTTATCTCCTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTTTCCAGAAGTCAGTTTTTATATTCCTTGGTTATCTCCTTTA  391

seq1  GATTTTATAGGCTGTAGTTCCTCTAAAAACTTTCTTCCAGGGTTCGAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTATAGGCTGTAGTTCCTCTAAAAACTTTCTTCCAGGGTTCGAAAC  441

seq1  TTTATGTAAAATATTAAATATAAAGTGAGGGGCGGGAAAGATTACTATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTAAAATATTAAATATAAAGTGAGGGGCGGGAAAGATTACTATAG  491

seq1  AACTGAAAAAGAATTTTCACATTGTTTAAGCACAAGGACCTCACCCATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAAAAGAATTTTCACATTGTTTAAGCACAAGGACCTCACCCATAC  541

seq1  CTATGTACTGTTACTTAAGGCTCCATTTTTTAAAAAAATGTTTGGTAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTACTGTTACTTAAGGCTCCATTTTTTAAAAAAATGTTTGGTAAAT  591

seq1  TAAGCGCTATAAACTAGAATGGAAGATCAATGCTAGGTAAACAGAGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCGCTATAAACTAGAATGGAAGATCAATGCTAGGTAAACAGAGGAAA  641

seq1  CTGAACCTAATCTGTCTGTACTAGGCTTTATACATTCATTGTGAGCTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACCTAATCTGTCTGTACTAGGCTTTATACATTCATTGTGAGCTTGC  691

seq1  TTTGTTTGTTTGCTTGTTTTCAGTAACATTGCTGG  735
      |||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTGCTTGTTTTCAGTAACATTGCTGG  726

seq1: chr9_121798381_121799171
seq2: B6Ng01-065N08.g_85_873

seq1  GGGCTACACAGTGATGACCTGGTTCTCAGGTCAGTCAACATTGTCTGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTACACAGTGATGACCTGGTTCTCAGGTCAGTCAACATTGTCTGCAA  50

seq1  GAGAGAGAGAATGTGGGGACTGAGGGGCAAGAGATGCGAAGAATGGAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAATGTGGGGACTGAGGGGCAAGAGATGCGAAGAATGGAGAC  100

seq1  AACACAGGCTATCTGCTCAAGTCTCAAGTCCTTTTTATTGGAAGGCAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGGCTATCTGCTCAAGTCTCAAGTCCTTTTTATTGGAAGGCAACT  150

seq1  ATGGGTATATATGCACTCGCTGGGGAGTGCAGCTGGAGACAATCACAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTATATATGCACTCGCTGGGGAGTGCAGCTGGAGACAATCACAGGT  200

seq1  CCAGGATGTATAGGAGAAAAACAAGATGTTATCAGAGTGTGTTCAGCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGATGTATAGGAGAAAAACAAGATGTTATCAGAGTGTGTTCAGCTAT  250

seq1  GGTGGGCTTCTTGCAGAAACATCATGCTAGGAAAAACAAGTCTCTCGTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGCTTCTTGCAGAAACATCATGCTAGGAAAAACAAGTCTCTCGTCG  300

seq1  GGTGGAAAAGTTCCACCTGTAAGTAAATAGCCCAAGATGGCTGCAGAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAAAAGTTCCACCTGTAAGTAAATAGCCCAAGATGGCTGCAGAGAT  350

seq1  GAGAGCTGCTTTCTGCTAAGAGTCGGCTCCCAACACAATGAGCTCCTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCTGCTTTCTGCTAAGAGTCGGCTCCCAACACAATGAGCTCCTGTT  400

seq1  TCAAAAGCTAAGATTACCAGCATGCAGCACCACACTTGGCTTTTTACCTG  450
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGCTAATATTACCAGCATGCAGCACCACACTTGGCTTTTTACCTG  450

seq1  AGTGTGCTTGTATGGGAAATACTGTCCGAGACATCTCCACAGCCCCAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGCTTGTATGGGAAATACTGTCCGAGACATCTCCACAGCCCCAGGG  500

seq1  ACAGCAGGACTGTGCCAAGGCTGAGTCTCTCTCTCTCTCTCTTTTTTTTT  550
      |||||||||||||||||||||||||||||||||||||||||  |||||||
seq2  ACAGCAGGACTGTGCCAAGGCTGAGTCTCTCTCTCTCTCTC--TTTTTTT  548

seq1  TTTTTTTTTTTTTTGTGAAGGGAATTGGCTGCCTATGTGAAGACTTAAAG  600
       ||| |||||| |||||||||||||||||||||||||||||||| |  ||
seq2  GTTTGTTTTTTATTGTGAAGGGAATTGGCTGCCTATGTGAAGACCTGGAG  598

seq1  TGGTGCATAGACAAGCATATTTTTATTATCATTTCTCCTTGGGGGATAAC  650
      ||| |||||||| ||||||||||||||||||| |  ||| ||||||||||
seq2  TGGGGCATAGACCAGCATATTTTTATTATCATGTGCCCTGGGGGGATAAC  648

seq1  ATCAAGCTGCAGTTTTACTATTCTTTCATAAGCTGGGGTTAGGTTGACTG  700
      ||||||||||||||||||||||| |||| |||||||||||| | ||||||
seq2  ATCAAGCTGCAGTTTTACTATTCCTTCAGAAGCTGGGGTTAAGATGACTG  698

seq1  AGTGTTTAAGTTTCAAGATGTCACACGTTGATTGGTTAGAGAAAGTTCAA  750
      |||||||||||||| ||| ||||||||  ||||||||| ||||| |||||
seq2  AGTGTTTAAGTTTCCAGAAGTCACACGGAGATTGGTTAAAGAAA-TTCAA  747

seq1  ACAGTGACACACACCACA-GGTGGCATGACAGCTTGTCACAT  791
      |||| | |||||  |||| |||||||||| ||||||||||||
seq2  ACAGGGTCACACCACACATGGTGGCATGAAAGCTTGTCACAT  789