BAC Information

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BAC

Clone NameB6Ng01-066O10
Chromosome10 (Build37)
Map Location 88,729,548 - 88,886,433
singlet/doubletdoublet
Overlap geneGas2l3
Upstream gene1200002N14Rik, Gnptab, Sycp3, Chpt1, 8030451F13Rik, LOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1, Utp20, Slc5a8, Tmem16d
Downstream geneNr1h4, EG627532, Slc17a8, Scyl2, Actr6, E030041M21Rik, E530015N03Rik, Anks1b, LOC100043039, LOC544719
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066O10.bB6Ng01-066O10.g
ACCDH885949DH885950
length1,2131,017
definitionDH885949|Mus musculus domesticus DNA, BAC clone: B6Ng01-066O10, 5' end.DH885950|Mus musculus domesticus DNA, BAC clone: B6Ng01-066O10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,729,548 - 88,730,779)(88,885,414 - 88,886,433)
sequence
gaattcataacgatacttccttagaagcctctggcctgttaggctaaccc
agctaatggaggcaccttgggaataatgaagcattctacacacactgctg
tgaactgcctggatgtggactccggcagaagggaagtcttgaagaaatct
taccacgatttaagatgggagtaaaaagatccccacctacttgaaagaag
aatttcactatagagagatgttcccaaaccacccaggagcgtccccatgt
gggtgtcattataagaaatgatgtgactgtagaggtgactctagcaaaga
gggaaatgtttgtgtggacagtggacactcccccacagcctcaggtttac
ataatttcctacactcttccccttacttcacaggaaacatgctgccatac
caccaaagaactggagaaaataaaaatcatgtgcccagagccagctgcaa
agactgttagtctataaagaaggatttctcgatagtctacttaaagtcac
aggcaaagaagctcacccatggtatgtcagggccctgactgaacggactg
atggcagagagttgaagtatgcctgcttaccccagccttccagcatcact
gacacacaatcagaaaaaaaaatgtaaaaaaactggaccattggtgttag
tgagcagattctgcaggctctattgccatgaaatgccccttcctgtctct
gcaaccaatttcggttctgttctttgaacggggaagtgaaaggagaccca
gcattttaaaggaccacagcctgctcaggttgtgatacatttaaactagc
tcatatagtgaaactttccatgatgtctttcctacttgtgagcttgtaga
agctctgtgagcttccaacataaacaaatctggattgcaggtaggggtgt
gagggggtgcagccattcccaagacagtctggcagattcttacaaagttg
acatgctcttctcatacggttccgagatgatgtgccttgacttttaccca
ggtaagctgaaaacatgtcccaccttgagtgtgacggcagcttttattat
gaatgccaggactcccagtactatgagatgaatggaacaataaactgtgt
ccgtcaagagcagatatcgttcaccttgaacaatgggtgcctggagcatc
agaagctgggcagaatctaatggatgttccaactagcaccgtaagcctgc
acttggccaatcc
gaattcaatttccatctgtcacgtgggtgttgggaaatgaacctgagtcc
ccaaaaaaatgtcagtgctcaaaactgctgagccatctctccagtcccaa
atttaaagtttttaagtttgtctcttttctttattttttgtattttgtta
tatctaagtatcattgcttaacaaaggcggtacgggttttaacctgttta
tcttgtattgttttgaggccacaaactatgatgttgactggagccgatcg
gagtggtacccttatctttagcctggcttcaggaggaacattttccacca
tttaccttaaatgtaaatgatattagaatgctatcagctgcggctttttc
atgggcccccttatcagattgagagtccccccactgggctggagagatgg
ctcagccgttaaaggctaggctcacaaccaaaaatataagagagtccccc
caccccccatcccgctttgtctttttcgcacataggaatggtgttagatt
ctttgaaattctttcatctgtatgctatccctttttgtgtgacgtaggac
cactgtttctattaattacgttggctgattttcatatattcaactgtttg
catgcctggcacaaattgtacttgtccactgcacactgctaggttgtgtc
gccagcatgttgaagatggttgcattcatatctgtggggctttcgatact
ggcttttcggttttcttgtgatatctttctctggcttctgtctttgtttt
ggagataatgatgcatcagagagtaagttaggaattgctacttcctgtct
ttgtgaagtttgagaactatataaagttgaggtgaccttgtctcttcaaa
cagcatcttcctgcttagagatctgtattataatgtattcagatgagggc
ggagattcagggtcttctgtgttctcttattttgagccagggttcttgct
aaacttggagctcatggtttgtctaggttggcagcaatgaacccgggatt
cttctgtttttatctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_88729548_88730779
seq2: B6Ng01-066O10.b_46_1258

seq1  GAATTCATAACGATACTTCCTTAGAAGCCTCTGGCCTGTTAGGCTAACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAACGATACTTCCTTAGAAGCCTCTGGCCTGTTAGGCTAACCC  50

seq1  AGCTAATGGAGGCACCTTGGGAATAATGAAGCATTCTACACACACTGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAATGGAGGCACCTTGGGAATAATGAAGCATTCTACACACACTGCTG  100

seq1  TGAACTGCCTGGATGTGGACTCCGGCAGAAGGGAAGTCTTGAAGAAATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTGCCTGGATGTGGACTCCGGCAGAAGGGAAGTCTTGAAGAAATCT  150

seq1  TACCACGATTTAAGATGGGAGTAAAAAGATCCCCACCTACTTGAAAGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACGATTTAAGATGGGAGTAAAAAGATCCCCACCTACTTGAAAGAAG  200

seq1  AATTTCACTATAGAGAGATGTTCCCAAACCACCCAGGAGCGTCCCCATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCACTATAGAGAGATGTTCCCAAACCACCCAGGAGCGTCCCCATGT  250

seq1  GGGTGTCATTATAAGAAATGATGTGACTGTAGAGGTGACTCTAGCAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTCATTATAAGAAATGATGTGACTGTAGAGGTGACTCTAGCAAAGA  300

seq1  GGGAAATGTTTGTGTGGACAGTGGACACTCCCCCACAGCCTCAGGTTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATGTTTGTGTGGACAGTGGACACTCCCCCACAGCCTCAGGTTTAC  350

seq1  ATAATTTCCTACACTCTTCCCCTTACTTCACAGGAAACATGCTGCCATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTCCTACACTCTTCCCCTTACTTCACAGGAAACATGCTGCCATAC  400

seq1  CACCAAAGAACTGGAGAAAATAAAAATCATGTGCCCAGAGCCAGCTGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAAGAACTGGAGAAAATAAAAATCATGTGCCCAGAGCCAGCTGCAA  450

seq1  AGACTGTTAGTCTATAAAGAAGGATTTCTCGATAGTCTACTTAAAGTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTTAGTCTATAAAGAAGGATTTCTCGATAGTCTACTTAAAGTCAC  500

seq1  AGGCAAAGAAGCTCACCCATGGTATGTCAGGGCCCTGACTGAACGGACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAGAAGCTCACCCATGGTATGTCAGGGCCCTGACTGAACGGACTG  550

seq1  ATGGCAGAGAGTTGAAGTATGCCTGCTTACCCCAGCCTTCCAGCATCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGAGAGTTGAAGTATGCCTGCTTACCCCAGCCTTCCAGCATCACT  600

seq1  GACACACAATCAGAAAAAAAAATGTAAAAAAACTGGACCATTGGTGTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACAATCAGAAAAAAAAATGTAAAAAAACTGGACCATTGGTGTTAG  650

seq1  TGAGCAGATTCTGCAGGCTCTATTGCCATGAAATGCCCCTTCCTGTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGATTCTGCAGGCTCTATTGCCATGAAATGCCCCTTCCTGTCTCT  700

seq1  GCAACCAATTTCGGTTCTGTTCTTTGAACGGGGAAGTGAAAGGAGACCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCAATTTCGGTTCTGTTCTTTGAACGGGGAAGTGAAAGGAGACCCA  750

seq1  GCATTTTAAAGGACCACAGCCTGCTCAGGTTGTGATACATTTAAACTAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTAAAGGACCACAGCCTGCTCAGGTTGTGATACATTTAAACTAGC  800

seq1  TCATATAGTGAAACTTTCCATGATGTCTTTCCTACTTGTGAGCTTGTAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATAGTGAAACTTTCCATGATGTCTTTCCTACTTGTGAGCTTGTAGA  850

seq1  AGCTCTGTGAGCTTCCAACATAAACAAATCTGGATTGCAGGTAGGGGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGTGAGCTTCCAACATAAACAAATCTGGATTGCAGGTAGGGGTGT  900

seq1  GAGGGGGTGCAGCCATTCCCAAGACAGTCTGGCAGATTCTTACAAAGTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGGTGCAGCCATTCCCAAGACAGTCTGGCAGATTCTTACAAAGTTG  950

seq1  AACATGCTCTTCTCATACGGTTCCGAGATGATGTGCCTTGACATTTACCC  1000
       ||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  -ACATGCTCTTCTCATACGGTTCCGAGATGATGTGCCTTGACTTTTACCC  999

seq1  AGGTAAGCTGAAAACATGTCCACACC-TGAGTGTTGACAGCAGCTTTATT  1049
      ||||||||||||||||||||| |||| |||||| |||| ||||||||  |
seq2  AGGTAAGCTGAAAACATGTCC-CACCTTGAGTG-TGACGGCAGCTTTTAT  1047

seq1  TATGATTGCCAGGACTCCCAAGTAACTATGAGATGAATGGACAAATAAAC  1099
      ||||| ||||||||||||| ||| |||||||||||||||||  |||||||
seq2  TATGAATGCCAGGACTCCC-AGT-ACTATGAGATGAATGGAACAATAAAC  1095

seq1  TGTGGCCCGTCAAGACAGCAGAATATCGTTCACCCTGAAACGATGTGTGC  1149
      ||| | ||||||||  ||||| |||||||||||| || ||| ||| ||||
seq2  TGT-GTCCGTCAAG--AGCAG-ATATCGTTCACCTTG-AACAATGGGTGC  1140

seq1  CTGGAGCTACAGAAGCATGGGCAGAGATCTTAAATTGATGTTACCAAACA  1199
      |||||||  ||||||| |||||||| ||||  ||| ||||||  | ||| 
seq2  CTGGAGCATCAGAAGC-TGGGCAGA-ATCT--AATGGATGTT--CCAACT  1184

seq1  AGCCAACGTGAAAGCCTGCATACTGCCCAATCC  1232
      || || |||  |||||||||   || |||||||
seq2  AG-CACCGT--AAGCCTGCA-CTTGGCCAATCC  1213

seq1: chr10_88885414_88886433
seq2: B6Ng01-066O10.g_70_1086 (reverse)

seq1  ACAGATAAAACACAGAAGATCCCGGGGCTCAATGGCTGCCCAACCTAGAC  50
      |||||||||| ||||||||  || ||| || || |||| |||||||||||
seq2  ACAGATAAAA-ACAGAAGAATCCCGGGTTC-ATTGCTG-CCAACCTAGAC  47

seq1  AAACCAATGAGCTCCAGGTTTAGCAAGGAACCCTGGCTCAAAAATAAGGA  100
      ||||| |||||||||| ||||||||| |||||||||||| ||||||| ||
seq2  AAACC-ATGAGCTCCAAGTTTAGCAA-GAACCCTGGCTC-AAAATAA-GA  93

seq1  GAACACAGGAGACCCTTGATCTCCGCCCTCCTCTGAATACATTATAATAC  150
      |||||||| |||||||  |||||||||||| |||||||||||||||||||
seq2  GAACACAGAAGACCCTGAATCTCCGCCCTCATCTGAATACATTATAATAC  143

seq1  AGATCTCTTAGCAGG-AGATGCTGTTTGAAGAGAC-AGGTCACCTCAACT  198
      |||||||| |||||| ||||||||||||||||||| ||||||||||||||
seq2  AGATCTCTAAGCAGGAAGATGCTGTTTGAAGAGACAAGGTCACCTCAACT  193

seq1  TTATATAGTTCTCAAACTTCACAAAGACAGGAAGTAGCAATTCCTAACTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATAGTTCTCAAACTTCACAAAGACAGGAAGTAGCAATTCCTAACTT  243

seq1  ACTCTCTGATGCATCATTATCTCCAAAACAAAGACAGAAGCCAGAGAAAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTGATGCATCATTATCTCCAAAACAAAGACAGAAGCCAGAGAAAG  293

seq1  ATATCACAAGAAAACCG-AAAGCCAGTATCG-AAGCCCCACAGATATGAA  346
      ||||||||||||||||| ||||||||||||| ||||||||||||||||||
seq2  ATATCACAAGAAAACCGAAAAGCCAGTATCGAAAGCCCCACAGATATGAA  343

seq1  TGCAACCATCTTCAACATGCTGGCGACACAACCTAGCAGTGTGCAGTGGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACCATCTTCAACATGCTGGCGACACAACCTAGCAGTGTGCAGTGGA  393

seq1  CAAGTACAATTTGTGCCAGGCATGCAAACAGTTGAATATATGAAAATCAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTACAATTTGTGCCAGGCATGCAAACAGTTGAATATATGAAAATCAG  443

seq1  CCAACGTAATTAATAGAAACAGTGGTCCTACGTCACACAAAAAGGGATAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACGTAATTAATAGAAACAGTGGTCCTACGTCACACAAAAAGGGATAG  493

seq1  CATACAGATGAAAGAATTTCAAAGAATCTAACACCATTCCTATGTGCGAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGATGAAAGAATTTCAAAGAATCTAACACCATTCCTATGTGCGAA  543

seq1  AAAGACAAAGCGGGATGGGGGGTGGGGGGACTCTCTTATATTTTTGGTTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAAAGCGGGATGGGGGGTGGGGGGACTCTCTTATATTTTTGGTTG  593

seq1  TGAGCCTAGCCTTTAACGGCTGAGCCATCTCTCCAGCCCAGTGGGGGGAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTAGCCTTTAACGGCTGAGCCATCTCTCCAGCCCAGTGGGGGGAC  643

seq1  TCTCAATCTGATAAGGGGGCCCATGAAAAAGCCGCAGCTGATAGCATTCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATCTGATAAGGGGGCCCATGAAAAAGCCGCAGCTGATAGCATTCT  693

seq1  AATATCATTTACATTTAAGGTAAATGGTGGAAAATGTTCCTCCTGAAGCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCATTTACATTTAAGGTAAATGGTGGAAAATGTTCCTCCTGAAGCC  743

seq1  AGGCTAAAGATAAGGGTACCACTCCGATCGGCTCCAGTCAACATCATAGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAAAGATAAGGGTACCACTCCGATCGGCTCCAGTCAACATCATAGT  793

seq1  TTGTGGCCTCAAAACAATACAAGATAAACAGGTTAAAACCCGTACCGCCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGCCTCAAAACAATACAAGATAAACAGGTTAAAACCCGTACCGCCT  843

seq1  TTGTTAAGCAATGATACTTAGATATAACAAAATACAAAAAATAAAGAAAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAAGCAATGATACTTAGATATAACAAAATACAAAAAATAAAGAAAA  893

seq1  GAGACAAACTTAAAAACTTTAAATTTGGGACTGGAGAGATGGCTCAGCAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAAACTTAAAAACTTTAAATTTGGGACTGGAGAGATGGCTCAGCAG  943

seq1  TTTTGAGCACTGACATTTTTTTGGGGACTCAGGTTCATTTCCCAACACCC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGCACTGACATTTTTTTGGGGACTCAGGTTCATTTCCCAACACCC  993

seq1  ACGTGACAGATGGAAATTGAATTC  1020
      ||||||||||||||||||||||||
seq2  ACGTGACAGATGGAAATTGAATTC  1017