BAC Information

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BAC

Clone NameB6Ng01-066P03
Chromosome10 (Build37)
Map Location 84,622,552 - 84,817,019
singlet/doubletdoublet
Overlap geneCry1, EG666974
Upstream geneLOC432482, Nuak1, Ckap4, Tcp11l2, Polr3b, Rfx4, EG625690, Ric8b, Fhl4, AI597468, Mterfd3
Downstream geneBtbd11, EG626858, LOC626878, LOC669723, LOC626940, Pwp1, Prdm4, Ascl4, D10Wsu52e, Bpil2, Fbxo7, Syn3, Timp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066P03.bB6Ng01-066P03.g
ACCDH885981DH885982
length1,1571,091
definitionDH885981|Mus musculus domesticus DNA, BAC clone: B6Ng01-066P03, 5' end.DH885982|Mus musculus domesticus DNA, BAC clone: B6Ng01-066P03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,622,552 - 84,623,721)(84,815,918 - 84,817,019)
sequence
gaattcatattcacgcacctataagaacttttctttaatcaaataaaatt
tatactacgtgtcaatttatgtttagatgtgcacaagtaactggaaagta
atttaccaaggctcttattatatctacccttgagaaatgaagttttggtt
agagataaaaatggacatatagcttcattaaaaaaaaaaatctcagaatt
ggcaaccagcacacattccttcagagtagaaagggtgggaccatatctgc
aacttgtgaaaaaccttgaatttctctgtctataaaactgaagtataata
ggacccataacatagacattttcatgagaacagaatcagttcacacatgt
ggggctcacagagcagtctctgtacacagtgagcactagtatgtgttatt
taatacctctcagtttcctccttgctaccaacttctatttttactacaat
aattctagttttatctcttgcttgtatttgctgcagtgtcttaaaataga
tctacctaccaacaatctctatcaccataatccagtacattatcaaatca
ttgtgagacgtatgatcttgtacaaaggtcttcaaaactcactccttata
tagtaaagagcaaagtatgttctcagctgccatccaatgatctcagggcc
attttctaccctgcttcctgctgctcctctgtaccaagctactactctgt
gatctgttcttcagtctgaaataattttgccaattcctatctcaaggtta
tatcttattgtcttaagtcttagagttgaaggtactttctctattctctc
aactgtcagaggagaatgtatttagtcctagaaaaaattcaaattgtttc
ttacagcacacacaactgcatacaagcatgtatacacatgtatacatata
catagacacacacaccccactagtttctgtggatttcatattagtgcctg
tgtctgattcttaacgtttgttttagtttctacatctggtaatatcgtca
taggtcttggcatagtctatgaaaaggttgagtaggatatgctaatgggc
ttgttttcatagctttggagggatagaaacactaaaaccaactagtagcc
attggctaaaacccataaatagagttactgttactctctctcgaataaat
tctttct
gaattctgttcttcatcctctcttatttcctactatggtgatctacaggt
gcagctacaggaaatatgctttacactgctaaaggaaactatctaaatgc
tacgaaatgctaagaggttttgtacattgcctggtggctgaggtcagaga
tagacactgagtgaagaacaggaagtgtagaagggacaggaagtgtggaa
agaccaggaaatgtggaaggacaggaaacgtggaaagaacagaagggagg
gaagtattgaagtcagagagaagacaaaagaaacgacctgccagagagcc
ccctcaggcagcccagctgccatacgctcttgcgaggtgtgttttccttt
tcagtaatttccaaaagtcaagtttctgcttcttttctcgtggtttgatt
ttagattccagagtcctcaggactcagaaagctgcacaaagtggatagat
gcataccaatgtccctcagcctccatgctaggattgtctaaagttcacgc
tacagtgtgaaccaagagttacctagatctctggtgtcatgagagctcct
gcctaccacacacacttacctaaatttaatcttttttttaaaagttatct
ttttaaagaagagttatttctatttattcatttctggggggggaggcatg
aatgtgcaggtgccacagaggtgagatgaaggtagagctgtagctgcagg
agattgtgagctgcccgacacgggagcagaggaccagactctgcaagagt
agcacatgctctttaactgctgagccatcctatgtcaaaacagccacacc
tcacttctcatctgaaatcattttaatcattttaaaagtgtactatatta
taaccaaacaacaaacaagccaagtggatcttgcgtatgatctatctaat
atgttcctaaactgaaagcaaaattattactgttactgaatgatatataa
aacttacacattttggtggtgctgattacatgacatttattcggtagtgc
tggtgacaaatacctactagagcacatagaaagatgtgttttgtctgact
catcttccaggaataggctaccatggtaagggagagtgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_84622552_84623721
seq2: B6Ng01-066P03.b_45_1201

seq1  GAATTCATATTCACGCACCTATAAGAACTTTTCTTTAATCAAATAAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATTCACGCACCTATAAGAACTTTTCTTTAATCAAATAAAATT  50

seq1  TATACTACGTGTCAATTTATGTTTAGATGTGCACAAGTAACTGGAAAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTACGTGTCAATTTATGTTTAGATGTGCACAAGTAACTGGAAAGTA  100

seq1  ATTTACCAAGGCTCTTATTATATCTACCCTTGAGAAATGAAGTTTTGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACCAAGGCTCTTATTATATCTACCCTTGAGAAATGAAGTTTTGGTT  150

seq1  AGAGATAAAAATGGACATATAGCTTCATTAAAAAAAAAAATCTCAGAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATAAAAATGGACATATAGCTTCATTAAAAAAAAAAATCTCAGAATT  200

seq1  GGCAACCAGCACACATTCCTTCAGAGTAGAAAGGGTGGGACCATATCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACCAGCACACATTCCTTCAGAGTAGAAAGGGTGGGACCATATCTGC  250

seq1  AACTTGTGAAAAACCTTGAATTTCTCTGTCTATAAAACTGAAGTATAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTGAAAAACCTTGAATTTCTCTGTCTATAAAACTGAAGTATAATA  300

seq1  GGACCCATAACATAGACATTTTCATGAGAACAGAATCAGTTCACACATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCATAACATAGACATTTTCATGAGAACAGAATCAGTTCACACATGT  350

seq1  GGGGCTCACAGAGCAGTCTCTGTACACAGTGAGCACTAGTATGTGTTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTCACAGAGCAGTCTCTGTACACAGTGAGCACTAGTATGTGTTATT  400

seq1  TAATACCTCTCAGTTTCCTCCTTGCTACCAACTTCTATTTTTACTACAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACCTCTCAGTTTCCTCCTTGCTACCAACTTCTATTTTTACTACAAT  450

seq1  AATTCTAGTTTTATCTCTTGCTTGTATTTGCTGCAGTGTCTTAAAATAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTAGTTTTATCTCTTGCTTGTATTTGCTGCAGTGTCTTAAAATAGA  500

seq1  TCTACCTACCAACAATCTCTATCACCATAATCCAGTACATTATCAAATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTACCAACAATCTCTATCACCATAATCCAGTACATTATCAAATCA  550

seq1  TTGTGAGACGTATGATCTTGTACAAAGGTCTTCAAAACTCACTCCTTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGACGTATGATCTTGTACAAAGGTCTTCAAAACTCACTCCTTATA  600

seq1  TAGTAAAGAGCAAAGTATGTTCTCAGCTGCCATCCAATGATCTCAGGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAAGAGCAAAGTATGTTCTCAGCTGCCATCCAATGATCTCAGGGCC  650

seq1  ATTTTCTACCCTGCTTCCTGCTGCTCCTCTGTACCAAGCTACTACTCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTACCCTGCTTCCTGCTGCTCCTCTGTACCAAGCTACTACTCTGT  700

seq1  GATCTGTTCTTCAGTCTGAAATAATTTTGCCAATTCCTATCTCAAGGTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGTTCTTCAGTCTGAAATAATTTTGCCAATTCCTATCTCAAGGTTA  750

seq1  TATCTTATTGTCTTAAGTCTTAGAGTTGAAGGTACTTTCTCTATTCTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTATTGTCTTAAGTCTTAGAGTTGAAGGTACTTTCTCTATTCTCTC  800

seq1  AACTGTCAGAGGAGAATGTATTTAGTCCTAGAAAAAATTCAAATTGTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTCAGAGGAGAATGTATTTAGTCCTAGAAAAAATTCAAATTGTTTC  850

seq1  TTACAGCACACACAACTGCATACAAGCATGTATACACATGTATACATATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGCACACACAACTGCATACAAGCATGTATACACATGTATACATATA  900

seq1  CATAGACACACACACCCCACTAGTTTCTGTGGATTTCATATTAAGTGCCT  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CATAGACACACACACCCCACTAGTTTCTGTGGATTTCATATT-AGTGCCT  949

seq1  GTGTCTGATTCTTAACGTATGTTTTAGTTTCTACATCTGGTAAATATCGT  1000
      |||||||||||||||||| |||||||||||||||||||||| ||||||||
seq2  GTGTCTGATTCTTAACGTTTGTTTTAGTTTCTACATCTGGT-AATATCGT  998

seq1  CATAGGTCTT-GCATAGTCTATTGAAAAGGTTTGAAGTAGGATATGCTAG  1049
      |||||||||| |||||||||| ||||||||||   |||||||||||||| 
seq2  CATAGGTCTTGGCATAGTCTA-TGAAAAGGTT--GAGTAGGATATGCTAA  1045

seq1  TGGGCTTGTTTTCCATAGCTTTTGAGGGGATTAGAAACACATAAAACCAA  1099
      |||||||||||| ||||||||| |||||   ||||||||| |||||||||
seq2  TGGGCTTGTTTT-CATAGCTTTGGAGGG--ATAGAAACAC-TAAAACCAA  1091

seq1  CTAGTAGCACAATGGCTAAAACCCATTAAATAGAAGTTACTGTTACTTCT  1149
      |||||||| || ||||||||||||| ||||||| |||||||||||| |||
seq2  CTAGTAGC-CATTGGCTAAAACCCA-TAAATAG-AGTTACTGTTAC-TCT  1137

seq1  CCTTCAGAATAATTTCTTTCT  1170
      |  || |||||| ||||||||
seq2  CTCTC-GAATAAATTCTTTCT  1157

seq1: chr10_84815918_84817019
seq2: B6Ng01-066P03.g_68_1158 (reverse)

seq1  CCACACTCTCCC-TAACATGGTATGCTCTATCCCTGGATGATGAGTCTAG  49
      |||||||||||| || ||||||| || |||| |||||| |||||||| ||
seq2  CCACACTCTCCCTTACCATGGTA-GC-CTATTCCTGGAAGATGAGTC-AG  47

seq1  AC-AAACACATCCTTCCTTATGGTGCTTCTAGTAGGTATTTTGTCA-CAG  97
      || ||||||||| |||  ||| |||| ||||||||||| ||||||| |||
seq2  ACAAAACACATCTTTC--TAT-GTGC-TCTAGTAGGTA-TTTGTCACCAG  92

seq1  CAACTACCGAATAAATGTCATGTAATCAGCACACACAAAAATGTGTAAAG  147
      | |||||||||||||||||||||||||||||| ||| ||||||||| |||
seq2  C-ACTACCGAATAAATGTCATGTAATCAGCAC-CACCAAAATGTGT-AAG  139

seq1  TTTTATATATTCATTCAGTAACAGTAATAATTTTTGCTTTCAGTTTAGGA  197
      ||||||||| |||||||||||||||||||| |||||||||||||||||||
seq2  TTTTATATA-TCATTCAGTAACAGTAATAA-TTTTGCTTTCAGTTTAGGA  187

seq1  ACATTATTAGATAGATCATACGCAAGATCCACTTGGCTTGTTTGTTGTTT  247
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACA-TATTAGATAGATCATACGCAAGATCCACTTGGCTTGTTTGTTGTTT  236

seq1  GGTTATAATAATAGTACACTTTTAAAATGATTAAAATGATTTCAGATGAG  297
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATAAT-ATAGTACACTTTTAAAATGATTAAAATGATTTCAGATGAG  285

seq1  AAGTGAGGTGTGGCTGTTTTGACATAGGATGGCTCAGCAGTT-AAGAGCA  346
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAGTGAGGTGTGGCTGTTTTGACATAGGATGGCTCAGCAGTTAAAGAGCA  335

seq1  TGTGCTACTCTTGCAGAGTCTGGTCCTCTGCTCCCGTGTCGGGCAGCTCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTACTCTTGCAGAGTCTGGTCCTCTGCTCCCGTGTCGGGCAGCTCA  385

seq1  CAATCTCCTGCAGCTACAGCTCTACCTTCATCTCACCTCTGTGGCACCTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTCCTGCAGCTACAGCTCTACCTTCATCTCACCTCTGTGGCACCTG  435

seq1  CACATTCATGCCTCCCCCCCCAGAAATGAATAAATAGAAATAACTCTTCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCATGCCTCCCCCCCCAGAAATGAATAAATAGAAATAACTCTTCT  485

seq1  TTAAAAAGATAACTTTTAAAAAAAAGATTAAATTTAGGTAAGTGTGTGTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAGATAACTTTTAAAAAAAAGATTAAATTTAGGTAAGTGTGTGTG  535

seq1  GTAGGCAGGAGCTCTCATGACACCAGAGATCTAGGTAACTCTTGGTTCAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCAGGAGCTCTCATGACACCAGAGATCTAGGTAACTCTTGGTTCAC  585

seq1  ACTGTAGCGTGAACTTTAGACAATCCTAGCATGGAGGCTGAGGGACATTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAGCGTGAACTTTAGACAATCCTAGCATGGAGGCTGAGGGACATTG  635

seq1  GTATGCATCTATCCACTTTGTGCAGCTTTCTGAGTCCTGAGGACTCTGGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCATCTATCCACTTTGTGCAGCTTTCTGAGTCCTGAGGACTCTGGA  685

seq1  ATCTAAAATCAAACCACGAGAAAAGAAGCAGAAACTTGACTTTTGGAAAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAAATCAAACCACGAGAAAAGAAGCAGAAACTTGACTTTTGGAAAT  735

seq1  TACTGAAAAGGAAAACACACCTCGCAAGAGCGTATGGCAGCTGGGCTGCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAAAAGGAAAACACACCTCGCAAGAGCGTATGGCAGCTGGGCTGCC  785

seq1  TGAGGGGGCTCTCTGGCAGGTCGTTTCTTTTGTCTTCTCTCTGACTTCAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGGGCTCTCTGGCAGGTCGTTTCTTTTGTCTTCTCTCTGACTTCAA  835

seq1  TACTTCCCTCCCTTCTGTTCTTTCCACGTTTCCTGTCCTTCCACATTTCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCCCTCCCTTCTGTTCTTTCCACGTTTCCTGTCCTTCCACATTTCC  885

seq1  TGGTCTTTCCACACTTCCTGTCCCTTCTACACTTCCTGTTCTTCACTCAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTTCCACACTTCCTGTCCCTTCTACACTTCCTGTTCTTCACTCAG  935

seq1  TGTCTATCTCTGACCTCAGCCACCAGGCAATGTACAAAACCTCTTAGCAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATCTCTGACCTCAGCCACCAGGCAATGTACAAAACCTCTTAGCAT  985

seq1  TTCGTAGCATTTAGATAGTTTCCTTTAGCAGTGTAAAGCATATTTCCTGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTAGCATTTAGATAGTTTCCTTTAGCAGTGTAAAGCATATTTCCTGT  1035

seq1  AGCTGCACCTGTAGATCACCATAGTAGGAAATAAGAGAGGATGAAGAACA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCACCTGTAGATCACCATAGTAGGAAATAAGAGAGGATGAAGAACA  1085

seq1  GAATTC  1102
      ||||||
seq2  GAATTC  1091