BAC Information

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BAC

Clone NameB6Ng01-066P19
Chromosome10 (Build37)1 (Build37)
Map Location 121,507,317 - 121,508,162189,220,188 - 189,220,738
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneWif1, LOC100042911, 4930505D03Rik, LOC100043498, Gns, Rassf3, LOC100043500, Tbk1, Xpot, D930020B18Rik, BC048403, Srgap1, EG216394
Downstream geneLOC668272, Tmem5, LOC100043513, LOC668275, Avpr1a, Ppm1h, D630033A02Rik, Mon2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066P19.bB6Ng01-066P19.g
ACCDH886013DH886014
length8471,026
definitionDH886013|Mus musculus domesticus DNA, BAC clone: B6Ng01-066P19, 5' end.DH886014|Mus musculus domesticus DNA, BAC clone: B6Ng01-066P19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(121,507,317 - 121,508,162)(189,220,188 - 189,220,738)
sequence
gaattctgaaaagtctcttaaggtcaaaaaagaactgatggaatagtaga
ggatattttttagattggctaatgggatacaatccatatcattcatcaat
ggctgtctcaccctggagagccagagaatctggtctttgtaaaatacaca
aggctgcattgttcatcgctctagtttgctgtgtgaacatgggagagcat
ggcctaaaaatgaggtagactaaagtcttaggcgctggtcaacttgacaa
tttatcagacaatttatactctgaggattaagaagagtcacttgaatcta
ctttataatcacaaggataatctgcacatgctaatccatgttttcccaca
caggtctgtaggcatacaatcaacaatagcccactgtagtgagcagtcta
aagtgaagccactcctgtctgctccatgtggaaggggccggaaacacact
tcctaagaacaacccatgttgtcaaggaacagagatgacaagactcttgt
ttacttggagttttctcaaaaggtctcagaaatattatgcagctgtgaat
gtgagcatgtatgtgtatgtctctctgtctttctctgtctccgtctctct
gtctttctctctctctgtctctctgtctctctctgtcatctctctctctc
tctctctctctctctctgtggttttattaggttaggttggtggtttgtct
tactctcttttgttgttgttttgtgttttctttctgtatggtatttaact
ttgtattcttggttcaagggtggtttgtggctgtacgggatttttgtttg
tgttttgagaaagaacttaaagttgggtaggtgggggaggggaaagg
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggttgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaatttctttg
aatagttcttcttgtttccacttggttgatttcacccctgagtttgatta
tttcctgccgtctactcctcttgggtgaatttgcttcctttttttctaga
gcttttagatgtgttgtcaagctgctagaatgtgcctctctcccgttttt
tcttgaaggcactcatagcttatgagtttccttcttaagaaatgctttca
ttgtgtcccaaaggtttggggtacgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_121507317_121508162
seq2: B6Ng01-066P19.b_47_893

seq1  GAATTCTGAAAAGTCTCTTAAGGTCAAAAAAGAACTGATGGAATAGTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAAAAGTCTCTTAAGGTCAAAAAAGAACTGATGGAATAGTAGA  50

seq1  GGATATTTTTTAGATTGGCTAATGGGATACAATCCATATCATTCATCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTTTTTAGATTGGCTAATGGGATACAATCCATATCATTCATCAAT  100

seq1  GGCTGTCTCACCCTGGAGAGCCAGAGAATCTGGTCTTTGTAAAATACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCTCACCCTGGAGAGCCAGAGAATCTGGTCTTTGTAAAATACACA  150

seq1  AGGCTGCATTGTTCATCGCTCTAGTTTGCTGTGTGAACATGGGAGAGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCATTGTTCATCGCTCTAGTTTGCTGTGTGAACATGGGAGAGCAT  200

seq1  GGCCTAAAAATGAGGTAGACTAAAGTCTTAGGCGCTGGTCAACTTGACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAAAAATGAGGTAGACTAAAGTCTTAGGCGCTGGTCAACTTGACAA  250

seq1  TTTATCAGACAATTTATACTCTGAGGATTAAGAAGAGTCACTTGAATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCAGACAATTTATACTCTGAGGATTAAGAAGAGTCACTTGAATCTA  300

seq1  CTTTATAATCACAAGGATAATCTGCACATGCTAATCCATGTTTTCCCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATAATCACAAGGATAATCTGCACATGCTAATCCATGTTTTCCCACA  350

seq1  CAGGTCTGTAGGCATACAATCAACAATAGCCCACTGTAGTGAGCAGTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTGTAGGCATACAATCAACAATAGCCCACTGTAGTGAGCAGTCTA  400

seq1  AAGTGAAGCCACTCCTGTCTGCTCCATGTGGAAGGGGCCGGAAACACACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAAGCCACTCCTGTCTGCTCCATGTGGAAGGGGCCGGAAACACACT  450

seq1  TCCTAAGAACAACCCATGTTGTCAAGGAACAGAGATGACAAGACTCTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAGAACAACCCATGTTGTCAAGGAACAGAGATGACAAGACTCTTGT  500

seq1  TTACTTGGAGTTTTCTCAAAAGGTCTCAGAAATATTATGCAGCTGTGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGGAGTTTTCTCAAAAGGTCTCAGAAATATTATGCAGCTGTGAAT  550

seq1  GTGAGCATGTATGTGTATGTCTCTCTGTCTTTCTCTGTCTCCGTCTCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCATGTATGTGTATGTCTCTCTGTCTTTCTCTGTCTCCGTCTCTCT  600

seq1  GTCTTTCTCTCTCTCTGTCTCTCTGTCTCTCTCTGTCTTCTCTCTCTCTC  650
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTCTTTCTCTCTCTCTGTCTCTCTGTCTCTCTCTGTCATCTCTCTCTCTC  650

seq1  TCTCTCTCTCTCTCTCTGTGGTTTTATTAGGTTAGGTTGGTGGTTTGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTGTGGTTTTATTAGGTTAGGTTGGTGGTTTGTCT  700

seq1  TACTCTCTTTTGTTGTTGTTTTGTGTTTTCTTTCTGTATGGTATTTAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTCTTTTGTTGTTGTTTTGTGTTTTCTTTCTGTATGGTATTTAACT  750

seq1  TTGTATTCTTGGTTCAAGGGTGGTTTGTGGCTGTACGGGATTTTTGTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTCTTGGTTCAAGGGTGGTTTGTGGCTGTACGGGATTTTTGTTTG  800

seq1  TGTTTTGAGAAAGAACTTAAAGTTGGGTAGGT-GGGGAGGGGAAAGG  846
      |||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGTTTTGAGAAAGAACTTAAAGTTGGGTAGGTGGGGGAGGGGAAAGG  847

seq1: chr1_189220188_189220738
seq2: B6Ng01-066P19.g_539_1094 (reverse)

seq1  ACGTA-CCCAAACCTTTGGGACACAATGAAAGCATTTC-TAAGAGGGAAA  48
      ||||| |||||||||||||||||||||||||||||||| ||||| |||||
seq2  ACGTACCCCAAACCTTTGGGACACAATGAAAGCATTTCTTAAGAAGGAAA  50

seq1  CTCAT-AGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGA-GCACATACT  96
      ||||| |||||||||||||||||||||||||||||||||| |||||| ||
seq2  CTCATAAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAGAGGCACATTCT  100

seq1  AGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTC  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTC  150

seq1  ACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAATCA  200

seq1  ACCAAGTGGAAACAAGAAGAACTATTCAAAG-AATTAACCAAACGAGGAG  245
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACCAAGTGGAAACAAGAAGAACTATTCAAAGAAATTAACCAAACGAGGAG  250

seq1  TTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCA  300

seq1  CTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAACTGAAAAG  345
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAG  350

seq1  GGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTT  400

seq1  CTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACA  450

seq1  AATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGAC  500

seq1  CTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAG  550

seq1  TCTCCC  551
      ||||||
seq2  TCTCCC  556