BAC Information

Click to search

BAC

Clone NameB6Ng01-067N20
Chromosome10 (Build37)
Map Location 93,294,932 - 93,341,037
singlet/doubletdoublet
Overlap geneUsp44, Metap2
Upstream geneGm872, 4930485B16Rik, EG667314, Pctk2, Elk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4, LOC667338, LOC100041907
Downstream geneVezt, Fgd6, Nr2c1, Ndufa12, EG215472, LOC100041955, Tmcc3, EG667315, 4921537D05Rik, Plxnc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067N20.bB6Ng01-067N20.g
ACCDH886618DH886619
length714318
definitionDH886618|Mus musculus domesticus DNA, BAC clone: B6Ng01-067N20, 5' end.DH886619|Mus musculus domesticus DNA, BAC clone: B6Ng01-067N20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,340,324 - 93,341,037)(93,294,932 - 93,295,255)
sequence
gaattcattttatgggtgcttgacatggaactgcatttgaatctcatgtc
taacacttgagttggctttgtgacacgggcaggttaacatcctcatccat
aaagtgggccctccctagactgctgtgcagcagtgatagagcagtgcaaa
gctcctagaccagggacaggcgcagtgtgagcactggctaaggtagtgct
gtcgccagaacaggcgcctgctggctttatagagaataccatggtgtgcc
ttaaagacggaatcaggagcattgcttagtatagtgcgtggagtaattgg
ttaagaaagcttctactgtagcatggtttcattggcttataaacattgaa
atgagtaaatgttattaaaaattcacctccctcatccctaggtatgagta
ttgttaggaaatctataaagttctaaaattttatgacatatacatctttt
ctttgaattcatctattatggtcccagccttaaaatgtcttaagtacatg
taatttacattaattacataaactctcataatacatgtgatatgatcaca
tttatttttaaatataatcttttaattgttttttttttttttattttgct
tgttccctcttctttcccttccttccagacccctgttaaccacctagcag
gtagccttccggatttttctatgctcatatatgtgtacttttgtgtgtgt
ctatatgaggggag
tgtattgctgatagccttcgttctatttcactttgcctttgagatagatt
ttgttgtgttctgcagtactggagatcaaacccagggctctccctcagag
ccctagttcacccaaaatggttctcagtgacacgatggatgaagacactt
gccccaccaagcgtggcgacccacatagtgggagagtgtgagggcgcagg
gaaaatgcctgacagagataataaacccatactgcagcactggcgtgccc
cctcccagactcacacaaaatattaccattctgtgtgagggaaaaatgct
gtgtgtgtgtgtgggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_93340324_93341037
seq2: B6Ng01-067N20.b_44_757 (reverse)

seq1  CTCCCCTCATATAAACACACACAAAAGTACACATATATGAGCATAGAAAA  50
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTCATATAGACACACACAAAAGTACACATATATGAGCATAGAAAA  50

seq1  ATACGGAAGGCTACCTGCTAGGTGGTTAACAGGGGTCTGGAAGGAAGGGA  100
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGGAAGGCTACCTGCTAGGTGGTTAACAGGGGTCTGGAAGGAAGGGA  100

seq1  AAGAAGAGGGAACAAGCAAAATAAAAAAAAAAAAAACAATTAAAAGATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAGGGAACAAGCAAAATAAAAAAAAAAAAAACAATTAAAAGATTA  150

seq1  TATTTAAAAATAAATGTGATCATATCACATGTACTATGAGAGTTTATGTA  200
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TATTTAAAAATAAATGTGATCATATCACATGTATTATGAGAGTTTATGTA  200

seq1  ATTAATGTAAATTACATGTACTTAAGACATTTTAAGGCTGGGACCATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGTAAATTACATGTACTTAAGACATTTTAAGGCTGGGACCATAAT  250

seq1  AGATGAATTCAAAGAAAAGATGTCTATGTCATAAAATTTTAGAACTTTAT  300
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGATGAATTCAAAGAAAAGATGTATATGTCATAAAATTTTAGAACTTTAT  300

seq1  AGATTTCCTAACAATACTCATACCTAGGGATGAGGGAGGTGAATTTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCCTAACAATACTCATACCTAGGGATGAGGGAGGTGAATTTTTAA  350

seq1  TAACATTTACTCATTTCAATGTTTATAAGCCAATGAAACCATGCTACAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTTACTCATTTCAATGTTTATAAGCCAATGAAACCATGCTACAGT  400

seq1  AGAAGCTTTCTTAACCAATTACTCCACGCACTATACTAAGCAATGCTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTTTCTTAACCAATTACTCCACGCACTATACTAAGCAATGCTCCT  450

seq1  GATTCCGTCTTTAAGGCACACCATGGTATTCTCTATAAAGCCAGCAGGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCGTCTTTAAGGCACACCATGGTATTCTCTATAAAGCCAGCAGGCG  500

seq1  CCTGTTCTGGCGACAGCACTACCTTAGCCAGTGCTCACACTGCGCCTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTCTGGCGACAGCACTACCTTAGCCAGTGCTCACACTGCGCCTGTC  550

seq1  CCTGGTCTAGGAGCTTTGCACTGCTCTATCACTGCTGCACAGCAGTCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCTAGGAGCTTTGCACTGCTCTATCACTGCTGCACAGCAGTCTAG  600

seq1  GGAGGGCCCACTTTATGGATGAGGATGTTAACCTGCCCGTGTCACAAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGCCCACTTTATGGATGAGGATGTTAACCTGCCCGTGTCACAAAGC  650

seq1  CAACTCAAGTGTTAGACATGAGATTCAAATGCAGTTCCATGTCAAGCAAC  700
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CAACTCAAGTGTTAGACATGAGATTCAAATGCAGTTCCATGTCAAGCACC  700

seq1  CATAAAATGAATTC  714
      ||||||||||||||
seq2  CATAAAATGAATTC  714

seq1: chr10_93294932_93295255
seq2: B6Ng01-067N20.g_65_388

seq1  GAATTCTGTATTGCTGATAGCCTTCGTTCTATTTCACTTTGCCTTTGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTATTGCTGATAGCCTTCGTTCTATTTCACTTTGCCTTTGAGA  50

seq1  TAGATTTTGTTGTGTTCTGCAGTACTGGAGATCAAACCCAGGGCTCTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTTGTTGTGTTCTGCAGTACTGGAGATCAAACCCAGGGCTCTCCC  100

seq1  TCAGAGCCCTAGTTCACCCAAAATGGTTCTCAGTGACACGATGGATGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCCCTAGTTCACCCAAAATGGTTCTCAGTGACACGATGGATGAAG  150

seq1  ACACTTGCCCCACCAAGCGTGGCGACCCACATAGTGGGAGAGTGTGAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGCCCCACCAAGCGTGGCGACCCACATAGTGGGAGAGTGTGAGGG  200

seq1  CGCAGGGAAAATGCCTGACAGAGATAATAAACCCATACTGCAGCACTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGGGAAAATGCCTGACAGAGATAATAAACCCATACTGCAGCACTGGC  250

seq1  GTGCCCCCTCCCAGACTCACACAAAATATTACCATTCTGTGTGAGGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCCCTCCCAGACTCACACAAAATATTACCATTCTGTGTGAGGGAAA  300

seq1  AATGCTGTGTGTGTGTGTGGGGGG  324
      ||||||||||||||||||||||||
seq2  AATGCTGTGTGTGTGTGTGGGGGG  324