BAC Information

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BAC

Clone NameB6Ng01-068C12
Chromosome10 (Build37)
Map Location 126,917,980 - 127,096,429
singlet/doubletdoublet
Overlap geneR3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6
Upstream geneLOC668336, Xrcc6bp1, LOC622567, Ctdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc
Downstream geneNab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068C12.bB6Ng01-068C12.g
ACCDH886826DH886827
length1,019998
definitionDH886826|Mus musculus domesticus DNA, BAC clone: B6Ng01-068C12, 5' end.DH886827|Mus musculus domesticus DNA, BAC clone: B6Ng01-068C12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,095,405 - 127,096,429)(126,917,980 - 126,918,985)
sequence
gaattcaaaagtcaagacatgagtcaggaaacaagctgccatgctaagtc
ttgacttagcatctcactgactgtgctctgagatcaggtccccccgcccc
cctcccccccgtaaaatagtatgagtttccagtgtgtccagtctgaacga
taggtattctgttccctaggcccaccccacatcaaaccctagaagtcaga
tagagctgatgaaaccaccaaggtactcgaggaaggaaaaagtctgcatc
atttttaggattaaaaaagattaataaataataaatcaccccagctgctg
ggatgtcgtcagtggcagagcacgcgcttggcacatgttcagtccttagc
acgagcttaggccccagcaccacagcaatacagcaaatatacggcaaata
agttgctgtaaatttcacaggtgagagagaatatgctagcagtgtttgct
gtaagcgctcagctcgggcctacacacattatgaattcgtgtaaccttca
ccataacgtcattatcgttattgctggaggctaggacctctaaccctggc
cttctgagtcttagacatcactcccacaagcacatggaggacggagttca
gcctgggctgcttccgcaaagcctggcaattcatggcttgtgacgggacg
ctgccccaccgcatctgacttactcctgaaaagatggcagtacactcatg
gactcttctaggctctgaaatgagtggatggactgtggaggatacctggg
gaaagaaaacaaactccagtgcgagccctcccagataaccccacaccctg
cctccgagaaaagaaaattcagtctgaaaaggcagcttgctcggccaacc
gtctggctacgctgaaaacctgcgcacagggccagtcccctcccgtctct
caagctcttaccccatatctgagctgagtgcatggaacatcaggggccat
tccaagatcttaaggtggcaccatggcaggattttgggctctggagtagg
aggggctggtcctacagga
gaattctgtcatgaagcagcgtctccatgttccttccctctccctcctga
ccactctcctagctcaccctcctgcaccaggggctccagctggagaagtg
atgaagtgatccaaaggactggacaggaagacggaaggaaaatagttagt
tgatctagaaccctgtgtgttctcagtagacagtctccttcctgaggcca
gtgaagggattaagggataaaaaccgcgggcttctggttgtgctttcctc
cgagtttgccccattcgctcatgagggcattttcatgttgccctcacaac
ttgaaggaacacagaaaatcatgactcaagaatctactggtggtttgttc
ctcttcctccctatagagggagatgtcacttcctcaaggagaactaactg
cccttgggtgtacacagtagacctcaagtgggcatttaggggatgttggc
ggagctccttagtgattgtgtgctcagcacagaatacaccctgggaaggc
tgtgcttgaactcacgtttagaccttgcccctgagagccccgagataact
cacagttgcagagtttaagtggcaaatggggcagggggtatactgggtct
cttttgagagagatgtggaagtcacaagctatcccgggcttggcgggcag
cctgctcaacggccacgtgattcataagtatgtcttgtatgactaatgtg
ttcctcccttccctcccgcctccctttatgctttctcttcctctccacat
gccgctgtgctgcccacagccagtcccggccctgcagccctctccacagc
cggttcagttttctcaaagctcctgtcctcaggtccttctgccagtctct
ccgccccagcagtacaacatggataacgaccatttgccatttagtcttgt
ccctgtgtggcctgtatttggggatgtctgggtcagtctttggtgggctt
gcaagcatgtggtgctttgaaaaaatagaagctgtttcttgaggacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_127095405_127096429
seq2: B6Ng01-068C12.b_48_1066 (reverse)

seq1  TCCTGTAGGGACCAGCCCCTTCCTACTCCAGAGCCCCAGATGCCTGCCAT  50
      ||||||| ||||||||||| |||||||||||||||| | || ||||||||
seq2  TCCTGTA-GGACCAGCCCC-TCCTACTCCAGAGCCCAAAAT-CCTGCCAT  47

seq1  GGTGCCACCTTATGATCTTGGAATGGCCCCTGATGCTTCCATGCAACTCA  100
      |||||||||||| |||||||||||||||||||||| |||||||| |||||
seq2  GGTGCCACCTTAAGATCTTGGAATGGCCCCTGATG-TTCCATGC-ACTCA  95

seq1  GCTCAGATATGGGGTAAAGAGCTTGAGAGACGGGAGGGGACTGG-CCTGT  149
      ||||||||||||||| |||||||||||||||||||||||||||| |||||
seq2  GCTCAGATATGGGGT-AAGAGCTTGAGAGACGGGAGGGGACTGGCCCTGT  144

seq1  GCGCAGGCTTTCAGCGTAGCCAGCCGGTCGGCCGAGCAAGCTGGCCTTTT  199
      ||||||| ||||||||||||||| |||| ||||||||||||| |||||||
seq2  GCGCAGGTTTTCAGCGTAGCCAGACGGTTGGCCGAGCAAGCT-GCCTTTT  193

seq1  CAGACTGAATTTTCCTTTCTCGGAGGCAGGGTGTGGGGTTATCTGGGAGG  249
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CAGACTGAATTTTCTTTTCTCGGAGGCAGGGTGTGGGGTTATCTGGGAGG  243

seq1  GCTCGCACTGGAGTTTGTTTTCTTTCCCCAGGTATCCTCCACAGTCCATC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGCACTGGAGTTTGTTTTCTTTCCCCAGGTATCCTCCACAGTCCATC  293

seq1  CACTCATTTCAGAGCCTAGAAGAGTCCATGAGTGTACTGCCATCTTTTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCATTTCAGAGCCTAGAAGAGTCCATGAGTGTACTGCCATCTTTTCA  343

seq1  GGAGTAAGTCAGATGCGGTGGGGCAGCGTCCCGTCACAAGCCATGAATTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAAGTCAGATGCGGTGGGGCAGCGTCCCGTCACAAGCCATGAATTG  393

seq1  CCAGGCTTTGCGGAAGCAGCCCAGGCTGAACTCCGTCCTCCATGTGCTTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTTTGCGGAAGCAGCCCAGGCTGAACTCCGTCCTCCATGTGCTTG  443

seq1  TGGGAGTGATGTCTAAGACTCAGAAGGCCAGGGTTAGAGGTCCTAGCCTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTGATGTCTAAGACTCAGAAGGCCAGGGTTAGAGGTCCTAGCCTC  493

seq1  CAGCAATAACGATAATGACGTTATGGTGAAGGTTACACGAATTCATAATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATAACGATAATGACGTTATGGTGAAGGTTACACGAATTCATAATG  543

seq1  TGTGTAGGCCCGAGCTGAGCGCTTACAGCAAACACTGCTAGCATATTCTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGGCCCGAGCTGAGCGCTTACAGCAAACACTGCTAGCATATTCTC  593

seq1  TCTCACCTGTGAAATTTACAGCAACTTATTTGCCGTATATTTGCTGTATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACCTGTGAAATTTACAGCAACTTATTTGCCGTATATTTGCTGTATT  643

seq1  GCTGTGGTGCTGGGGCCTAAGCTCGTGCTAAGGACTGAACATGTGCCAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGTGCTGGGGCCTAAGCTCGTGCTAAGGACTGAACATGTGCCAAG  693

seq1  CGCGTGCTCTGCCACTGACGACATCCCAGCAGCTGGGGTGATTTATTATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGTGCTCTGCCACTGACGACATCCCAGCAGCTGGGGTGATTTATTATT  743

seq1  TATTAATCTTTTTTAATCCTAAAAATGATGCAGACTTTTTCCTTCCTCGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATCTTTTTTAATCCTAAAAATGATGCAGACTTTTTCCTTCCTCGA  793

seq1  GTACCTTGGTGGTTTCATCAGCTCTATCTGACTTCTAGGGTTTGATGTGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTTGGTGGTTTCATCAGCTCTATCTGACTTCTAGGGTTTGATGTGG  843

seq1  GGTGGGCCTAGGGAACAGAATACCTATCGTTCAGACTGGACACACTGGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGCCTAGGGAACAGAATACCTATCGTTCAGACTGGACACACTGGAA  893

seq1  ACTCATACTATTTTACGGGGGGGAGGGGGGCGGGGGGACCTGATCTCAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATACTATTTTACGGGGGGGAGGGGGGCGGGGGGACCTGATCTCAGA  943

seq1  GCACAGTCAGTGAGATGCTAAGTCAAGACTTAGCATGGCAGCTTGTTTCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGTCAGTGAGATGCTAAGTCAAGACTTAGCATGGCAGCTTGTTTCC  993

seq1  TGACTCATGTCTTGACTTTTGAATTC  1025
      ||||||||||||||||||||||||||
seq2  TGACTCATGTCTTGACTTTTGAATTC  1019

seq1: chr10_126917980_126918985
seq2: B6Ng01-068C12.g_69_1066

seq1  GAATTCTGTCATGAAGCAGCGTCTCCATGTTCCTTCCCTCTCCCTCCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCATGAAGCAGCGTCTCCATGTTCCTTCCCTCTCCCTCCTGA  50

seq1  CCACTCTCCTAGCTCACCCTCCTGCACCAGGGGCTCCAGCTGGAGAAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTCCTAGCTCACCCTCCTGCACCAGGGGCTCCAGCTGGAGAAGTG  100

seq1  ATGAAGTGATCCAAAGGACTGGACAGGAAGACGGAAGGAAAATAGTTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTGATCCAAAGGACTGGACAGGAAGACGGAAGGAAAATAGTTAGT  150

seq1  TGATCTAGAACCCTGTGTGTTCTCAGTAGACAGTCTCCTTCCTGAGGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTAGAACCCTGTGTGTTCTCAGTAGACAGTCTCCTTCCTGAGGCCA  200

seq1  GTGAAGGGATTAAGGGATAAAAACCGCGGGCTTCTGGTTGTGCTTTCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGGATTAAGGGATAAAAACCGCGGGCTTCTGGTTGTGCTTTCCTC  250

seq1  CGAGTTTGCCCCATTCGCTCATGAGGGCATTTTCATGTTGCCCTCACAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTTTGCCCCATTCGCTCATGAGGGCATTTTCATGTTGCCCTCACAAC  300

seq1  TTGAAGGAACACAGAAAATCATGACTCAAGAATCTACTGGTGGTTTGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGGAACACAGAAAATCATGACTCAAGAATCTACTGGTGGTTTGTTC  350

seq1  CTCTTCCTCCCTATAGAGGGAGATGTCACTTCCTCAAGGAGAACTAACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCTCCCTATAGAGGGAGATGTCACTTCCTCAAGGAGAACTAACTG  400

seq1  CCCTTGGGTGTACACAGTAGACCTCAAGTGGGCATTTAGGGGATGTTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGGTGTACACAGTAGACCTCAAGTGGGCATTTAGGGGATGTTGGC  450

seq1  GGAGCTCCTTAGTGATTGTGTGCTCAGCACAGAATACACCCTGGGAAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTCCTTAGTGATTGTGTGCTCAGCACAGAATACACCCTGGGAAGGC  500

seq1  TGTGCTTGAACTCACGTTTAGACCTTGCCCCTGAGAGCCCCGAGATAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTGAACTCACGTTTAGACCTTGCCCCTGAGAGCCCCGAGATAACT  550

seq1  CACAGTTGCAGAGTTTAAGTGGCAAATGGGGCAGGGGGTATACTGGGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTGCAGAGTTTAAGTGGCAAATGGGGCAGGGGGTATACTGGGTCT  600

seq1  CTTTTGAGAGAGATGTGGAAGTCACAAGCTATCCCGGGCTTGGCGGGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGAGAGAGATGTGGAAGTCACAAGCTATCCCGGGCTTGGCGGGCAG  650

seq1  CCTGCTCAACGGCCACGTGATTCATAAGTATGTCTTGTATGACTAATGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCAACGGCCACGTGATTCATAAGTATGTCTTGTATGACTAATGTG  700

seq1  TTCCTCCCTTCCCT-CCGCCTCCCTTTATGCTTTTCTCTTCCTCTCCACA  749
      |||||||||||||| |||||||||||||||| ||||||||||||||||||
seq2  TTCCTCCCTTCCCTCCCGCCTCCCTTTATGC-TTTCTCTTCCTCTCCACA  749

seq1  TGCCGCTGTGCTGCCCACAGCCAGTCCCGGCCCTGCAGCCCTCTCCACAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGCTGTGCTGCCCACAGCCAGTCCCGGCCCTGCAGCCCTCTCCACAG  799

seq1  CCGGTTCAGTTTTCTCCAAGCTCCTGTCCCCAGGTCCTTCTGCCAGTCTC  849
      |||||||||||||||| |||||||||||| ||||||||||||||||||||
seq2  CCGGTTCAGTTTTCTCAAAGCTCCTGTCCTCAGGTCCTTCTGCCAGTCTC  849

seq1  TCCGCCCCAGCAGTACAACATGGTATAACGACCATTTGCCATTTTGTCTT  899
      ||||||||||||||||||||||| |||||||||||||||||||| |||||
seq2  TCCGCCCCAGCAGTACAACATGG-ATAACGACCATTTGCCATTTAGTCTT  898

seq1  GTCCCTGTGTGGCCTGTATCTGTGGGATGTCTGGGTCAGTCTTTGGTGGC  949
      ||||||||||||||||||| || |||||||||||||||||||||||||| 
seq2  GTCCCTGTGTGGCCTGTATTTG-GGGATGTCTGGGTCAGTCTTTGGTGGG  947

seq1  CTTGCAAGCATGTGGTGCTTTTGGAAGAGACATAGAAAGCTGTTTCTTGA  999
      |||||||||||||||||||||  ||  | | |||| ||||||||||||||
seq2  CTTGCAAGCATGTGGTGCTTT--GA--AAAAATAG-AAGCTGTTTCTTGA  992

seq1  GGGACCA  1006
       ||||||
seq2  -GGACCA  998