BAC Information

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BAC

Clone NameB6Ng01-068F05
Chromosome10 (Build37)
Map Location 56,494,572 - 56,639,905
singlet/doubletdoublet
Overlap geneLOC100042628
Upstream geneD630037F22Rik, 1700060H10Rik, EG629732, Gja1, EG668347, LOC100042622, LOC668355
Downstream geneEG629739, LOC629742, LOC668363, Hsf2, Serinc1, LOC211619, LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068F05.bB6Ng01-068F05.g
ACCDH886945DH886946
length1,2021,022
definitionDH886945|Mus musculus domesticus DNA, BAC clone: B6Ng01-068F05, 5' end.DH886946|Mus musculus domesticus DNA, BAC clone: B6Ng01-068F05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,494,572 - 56,495,800)(56,638,880 - 56,639,905)
sequence
gaattcactattttgtttgtttttgaggaaggcattgggaaagcactgta
tcaaaacacaaagatatcatcaaacaacaattagttttaggtattttcag
tctgaccacaaataaaaaagtaatcctcctggcaaaactatactcacttc
cacaggaataactccatgcctggggacacgactcttgtgacagaaactta
ggcatttaatctctgtatgaagacattggccatctgaatacaccacaaga
tagaaggcggagtagatggcagtgaaaaggaggagagatcttctttatgc
tttaccataaaatagtctctcttgtctttaccaactctcccaaatacttg
tagatagccgttgggatgctcatgaccaatcaattaaaaacaatgaatcc
agtttactcttactttgttattggcatagctattccatgaggcacctatc
taaacaactttgggtagaataatatgtagggggagtttccctgattcctt
tcctaattatttccctaattgttgattggctaataaagatggcagaagcc
aataactggcagagctggccacagggtggttggctggagacagagcgatc
tcggagctcgaagaaacaaagcaggcatttgtggttaggaggaacaggca
ggcagcttctggtcccagagtctagctggaccaagcatgccttttaaagt
tatatgctacaataatatatcttgatatctgaatttgggccattattaaa
gagcaatgtgagatactttggggtattaattaaaatgctttcctaattta
catacattatacacattataagtgtgtgtgttgtgtatccactttccata
gacacaaccatcacttgtgtaacacaatctagtaattaaataatagttat
gaccttactgtcagaggccttttttgttttctaaagatatttatgcatat
gtagtgaacgtatatctcatgtgtacagtgcccacagacacataggagag
cattggattccctggagctggagtaagggagttgtgagagctagagacca
aatttagttgattctcaagaaagcactagtatctcatgactgggcatctt
cagctttgtagcacatgggcagcttatggagtattctgagtttttctatc
ggcaggaggtgaactgttctatggattcaatagtctgtcttattctttca
aa
gaattctgataaaactcatccttgtatcttttaatcaactaaattgtgtt
aatttcaacaatctgttctaatttaaggaagtccttatcctctatgacaa
tgaaaccagtttgttattcagaggaaagcaaaacctacagatgcttagct
atgctgccttaagtgagttttccaagtcatattcattccttctttcctgt
ttgatgcgatgactcaagtttctcagtgagaagacacctccccttgtggt
catcttttatgttcttgcagcaacccaaaagtgttgcacttacctatcaa
gcaattaaatatatatatatatattgctgtaaagagacaccatgaccatg
gcatcttgtatttaaaaaaaaaaaaaaaaaaacagaaaatgtaattgggg
ctggctcacagttcagacatttagtccgttatctgcagggcaggaagcat
ggtggcatggcatgcatggtggcatgtcatgctggcagaaatgattctgg
ggaagagctgagacttctattatctgaatctacaggcaacaggaagagag
agattgccacactgggcacagcatgagcgcctaagacctcaaggtctgcc
cccagtgaccacttcttccaacaaggcctcacctattccaggtcatactt
cctaatagtgctactccctatgggcttatggggaaggggcattttcattc
aaaccaccacgataaatcagcaaacttcttgaaagggagatgccgtagcc
aatgtttcttacaaccctttccaacaaggttgagctgaaggtgctcccag
aaatagatgtttctttctactggctctcatttcagaaagaggagtgtaga
tatgtgccaggggtgggggtacaactgactagcacttatagtttgtcaaa
agtcacagatttcaaatactctgtagtacagcattagaaagaactatact
aaccctctcaaagtaccagtacccaaaaccagaacagaaacagcatgtag
agagctttttaaggatatttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_56494572_56495800
seq2: B6Ng01-068F05.b_47_1248

seq1  GAATTCACTATTTTGTTTGTTTTTGAGGAAGGCATTGGGAAAGCACTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATTTTGTTTGTTTTTGAGGAAGGCATTGGGAAAGCACTGTA  50

seq1  TCAAAACACAAAGATATCATCAAACAACAATTAGTTTTAGGTATTTTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACACAAAGATATCATCAAACAACAATTAGTTTTAGGTATTTTCAG  100

seq1  TCTGACCACAAATAAAAAAGTAATCCTCCTGGCAAAACTATACTCACTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCACAAATAAAAAAGTAATCCTCCTGGCAAAACTATACTCACTTC  150

seq1  CACAGGAATAACTCCATGCCTGGGGACACGACTCTTGTGACAGAAACTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAATAACTCCATGCCTGGGGACACGACTCTTGTGACAGAAACTTA  200

seq1  GGCATTTAATCTCTGTATGAAGACATTGGCCATCTGAATACACCACAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTAATCTCTGTATGAAGACATTGGCCATCTGAATACACCACAAGA  250

seq1  TAGAAGGCGGAGTAGATGGCAGTGAAAAGGAGGAGAGATCTTCTTTATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGGCGGAGTAGATGGCAGTGAAAAGGAGGAGAGATCTTCTTTATGC  300

seq1  TTTACCATAAAATAGTCTCTCTTGTCTTTACCAACTCTCCCAAATACTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCATAAAATAGTCTCTCTTGTCTTTACCAACTCTCCCAAATACTTG  350

seq1  TAGATAGCCGTTGGGATGCTCATGACCAATCAATTAAAAACAATGAATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGCCGTTGGGATGCTCATGACCAATCAATTAAAAACAATGAATCC  400

seq1  AGTTTACTCTTACTTTGTTATTGGCATAGCTATTCCATGAGGCACCTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTACTCTTACTTTGTTATTGGCATAGCTATTCCATGAGGCACCTATC  450

seq1  TAAACAACTTTGGGTAGAATAATATGTAGGGGGAGTTTCCCTGATTCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAACTTTGGGTAGAATAATATGTAGGGGGAGTTTCCCTGATTCCTT  500

seq1  TCCTAATTATTTCCCTAATTGTTGATTGGCTAATAAAGATGGCAGAAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAATTATTTCCCTAATTGTTGATTGGCTAATAAAGATGGCAGAAGCC  550

seq1  AATAACTGGCAGAGCTGGCCACAGGGTGGTTGGCTGGAGACAGAGCGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTGGCAGAGCTGGCCACAGGGTGGTTGGCTGGAGACAGAGCGATC  600

seq1  TCGGAGCTCGAAGAAACAAAGCAGGCATTTGTGGTTAGGAGGAACAGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAGCTCGAAGAAACAAAGCAGGCATTTGTGGTTAGGAGGAACAGGCA  650

seq1  GGCAGCTTCTGGTCCCAGAGTCTAGCTGGACCAAGCATGCCTTTTAAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTTCTGGTCCCAGAGTCTAGCTGGACCAAGCATGCCTTTTAAAGT  700

seq1  TATATGCTACAATAATATATCTTGATATCTGAATTTGGGCCATTATTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCTACAATAATATATCTTGATATCTGAATTTGGGCCATTATTAAA  750

seq1  GAGCAATGTGAGATACTTTGGGGTATTAATTAAAATGCTTTCCTAATTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAATGTGAGATACTTTGGGGTATTAATTAAAATGCTTTCCTAATTTA  800

seq1  CATACATTATACACATTATAAGTGTGTGTGTTTGTGTATCCACTTTCCAT  850
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CATACATTATACACATTATAAGTGTGTGTG-TTGTGTATCCACTTTCCAT  849

seq1  AGACACAACCATCACTTGTGTTAACACAATCTAGTAATTAAATAATAGTT  900
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGACACAACCATCACTTGTG-TAACACAATCTAGTAATTAAATAATAGTT  898

seq1  ATGACCTTACTGTCAGAGGCCTTTTTTGTTTTCTAAAGATATTTATGCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTTACTGTCAGAGGCCTTTTTTGTTTTCTAAAGATATTTATGCAT  948

seq1  ATGTAGTGAACGTATATCTCATGTGTACAGTGCCCACAGACACCATAGGA  1000
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATGTAGTGAACGTATATCTCATGTGTACAGTGCCCACAGACA-CATAGGA  997

seq1  GAGCATTGGATTCCCTGGAGCTGGAGGTAAAGGAAGTTGTGAGAGCTAGA  1050
      ||||||||||||||||||||||||||   |||| ||||||||||||||||
seq2  GAGCATTGGATTCCCTGGAGCTGGAG--TAAGGGAGTTGTGAGAGCTAGA  1045

seq1  GACCAAATTTAGGTGGATTCTCAAGGAAAGCACTAAGTATTCTCCATGAC  1100
      ||||||||||| || ||||||||| ||||||||| |||| ||| ||||||
seq2  GACCAAATTTA-GTTGATTCTCAA-GAAAGCACT-AGTA-TCT-CATGAC  1090

seq1  TGAGCCATCTTCCCAGCCTTTGTAGTCACCAATGGGGCAGCTTATTGGAG  1150
      || | ||||||  ||| |||||||| |||  || |||||||||| |||||
seq2  TG-GGCATCTT--CAG-CTTTGTAG-CAC--AT-GGGCAGCTTA-TGGAG  1131

seq1  TTTATCTGAGTTTTTTCCTATCTGCCCAAGTGAGGTGAACATGTCTCATG  1200
      | | |||||||||||  ||||| ||   || ||||||||| |||   |||
seq2  TAT-TCTGAGTTTTT--CTATCGGC---AG-GAGGTGAAC-TGTTCTATG  1173

seq1  GATTCAAATAGTCTGTCTT-TTCTTCCAAA  1229
      ||||| ||||||||||||| ||||| ||||
seq2  GATTC-AATAGTCTGTCTTATTCTTTCAAA  1202

seq1: chr10_56638880_56639905
seq2: B6Ng01-068F05.g_69_1090 (reverse)

seq1  TTAAGTATCCTTAAAAAAGCTCTCTACATGCTGTTTCTTGTTCTGGTTTT  50
      |||| ||||||| |||||||||||||||||||||||| ||||||||||||
seq2  TTAAATATCCTT-AAAAAGCTCTCTACATGCTGTTTC-TGTTCTGGTTTT  48

seq1  GGGTACTGGTACTTTGGGGAGGGTTAGTATAGTTTCTTTCTAATGCTGTG  100
      ||||||||||||||| | |||||||||||||| |||||||||||||||| 
seq2  GGGTACTGGTACTTT-GAGAGGGTTAGTATAG-TTCTTTCTAATGCTGT-  95

seq1  ACTTACAGAGTATTTGATATCTGTGACTTTTGACAAACTAT-AGTGCTAG  149
      || |||||||||||||| ||||||||||||||||||||||| ||||||||
seq2  AC-TACAGAGTATTTGAAATCTGTGACTTTTGACAAACTATAAGTGCTAG  144

seq1  TCAGTTGTA-CCCCACCCTTGGCACATATCTCACACTCCTCTTTCTG-AA  197
      ||||||||| |||||||| |||||||||||| ||||||||||||||| ||
seq2  TCAGTTGTACCCCCACCCCTGGCACATATCT-ACACTCCTCTTTCTGAAA  193

seq1  TGGGAGCCAGTAG-AAGAAACATCTATTTTCTGGGAGCACCTTCAGCTCA  246
      || |||||||||| |||||||||||| |||||||||||||||||||||||
seq2  TGAGAGCCAGTAGAAAGAAACATCTA-TTTCTGGGAGCACCTTCAGCTCA  242

seq1  ACCTTGTTGGAAAGGGTTGTAAGAAACATTGGCTACGGCATCTCCCTTTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGTTGGAAAGGGTTGTAAGAAACATTGGCTACGGCATCTCCCTTTC  292

seq1  AAGAAGTTTGCTGATTTATCGTGGTGGTTTGAATGAAAATGCCCCTTCCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTTTGCTGATTTATCGTGGTGGTTTGAATGAAAATGCCCCTTCCC  342

seq1  CATAAGCCCATAGGGAGTAGCACTATTAGGAAGTATGACCTGGAATAGGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGCCCATAGGGAGTAGCACTATTAGGAAGTATGACCTGGAATAGGT  392

seq1  GAGGCCTTGTTGGAAGAAGTGGTCACTGGGGGCAGACCTTGAGGTCTTAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCTTGTTGGAAGAAGTGGTCACTGGGGGCAGACCTTGAGGTCTTAG  442

seq1  GCGCTCATGCTGTGCCCAGTGTGGCAATCTCTCTCTTCCTGTTGCCTGTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTCATGCTGTGCCCAGTGTGGCAATCTCTCTCTTCCTGTTGCCTGTA  492

seq1  GATTCAGATAATAGAAGTCTCAGCTCTTCCCCAGAATCATTTCTGCCAGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAGATAATAGAAGTCTCAGCTCTTCCCCAGAATCATTTCTGCCAGC  542

seq1  ATGACATGCCACCATGCATGCCATGCCACCATGCTTCCTGCCCTGCAGAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATGCCACCATGCATGCCATGCCACCATGCTTCCTGCCCTGCAGAT  592

seq1  AACGGACTAAATGTCTGAACTGTGAGCCAGCCCCAATTACATTTTCTGTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGACTAAATGTCTGAACTGTGAGCCAGCCCCAATTACATTTTCTGTT  642

seq1  TTTTTTTTTTTTTTTTTAAATACAAGATGCCATGGTCATGGTGTCTCTTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTAAATACAAGATGCCATGGTCATGGTGTCTCTTT  692

seq1  ACAGCAATATATATATATATATTTAATTGCTTGATAGGTAAGTGCAACAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAATATATATATATATATTTAATTGCTTGATAGGTAAGTGCAACAC  742

seq1  TTTTGGGTTGCTGCAAGAACATAAAAGATGACCACAAGGGGAGGTGTCTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGTTGCTGCAAGAACATAAAAGATGACCACAAGGGGAGGTGTCTT  792

seq1  CTCACTGAGAAACTTGAGTCATCGCATCAAACAGGAAAGAAGGAATGAAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGAGAAACTTGAGTCATCGCATCAAACAGGAAAGAAGGAATGAAT  842

seq1  ATGACTTGGAAAACTCACTTAAGGCAGCATAGCTAAGCATCTGTAGGTTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTGGAAAACTCACTTAAGGCAGCATAGCTAAGCATCTGTAGGTTT  892

seq1  TGCTTTCCTCTGAATAACAAACTGGTTTCATTGTCATAGAGGATAAGGAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCCTCTGAATAACAAACTGGTTTCATTGTCATAGAGGATAAGGAC  942

seq1  TTCCTTAAATTAGAACAGATTGTTGAAATTAACACAATTTAGTTGATTAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTAAATTAGAACAGATTGTTGAAATTAACACAATTTAGTTGATTAA  992

seq1  AAGATACAAGGATGAGTTTTATCAGAATTC  1026
      ||||||||||||||||||||||||||||||
seq2  AAGATACAAGGATGAGTTTTATCAGAATTC  1022