BAC Information

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BAC

Clone NameB6Ng01-068H23
ChromosomeX (Build37)10 (Build37)
Map Location 105,554,453 - 105,555,09054,345,938 - 54,346,933
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneItm2a, 4933401B06Rik, Tbx22, 2610002M06Rik, Gm732
Downstream geneGm378, LOC668516, Gm379, Brwd3, 5730416F02Rik, Nsbp1, Sh3bgrl, EG622976, LOC100042831
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068H23.bB6Ng01-068H23.g
ACCDH887069DH887070
length1,002992
definitionDH887069|Mus musculus domesticus DNA, BAC clone: B6Ng01-068H23, 5' end.DH887070|Mus musculus domesticus DNA, BAC clone: B6Ng01-068H23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(105,554,453 - 105,555,090)(54,345,938 - 54,346,933)
sequence
gaattcctgatctttccaagacttttatcatgaatggatgttggattttg
tcaaatgctttctcagcatctaaagagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattatgttgatggatttccgtatattaaatc
ctccctgcatccctggggtgaaacctacttggccaggatggatgattgtt
ttgatatgttcttggattcggttagctagaattttattgaagatttttgc
attgatattcatcagggaaattggtctgaagttctctatctttgttgagt
ctttctgtggtttaggtatcagagcaattgtggcttcatagaatgaattg
ggtagagtaccttctgcttctattttgcttcttgtttatgaagaactgaa
attaaattgtctttgaagatctgatagaactctgcactaaacccatctgg
tcctggactttttttggttgggagactattaatgattgctcctatttctt
taggggatataggactgtttttatcattcacctgatcctgatttaacttt
ggtacctggtatctgcctagaaatttgtccatttcatccagattttccag
ttttgttgagtatagcctttttagaaggatctgatgatggtttgaatttc
ttcaggatctgttgttatgtctcacttttcatttctgattttgttaatta
ggatgctgtccttctgccctctagtaagtctgtctaagggtttatctgtc
ttgttgattttctcaaagaaccagctccttgtttggttgattctttgaat
agttcttcctgtttccccttggttgattttgcccctgagtttgattattt
cctgacttctactcctcttgggtgaaattgcttccttttgttctagagca
tttagctgtgttgtcaagctattagtgtgtgctctctctagtttcttttt
gaaggcactcagagctatgagttttcctcttagaaatgctttcatgggtc
cc
gaattccaaatagcttggagcagaaaagaaattcctcccatcacagaata
gtcaaaacaccaaattcacaaaacaaagaaagaatattacaggctaataa
ttcttagattaaccttcctttatgttgttttgtgtggcaagcatgctatc
tcagcccacagaataatttttccaatagcaaaacaaatatcctggtacta
taattggatgtggacaataggtttttagtttaggtaggtagcctattaaa
tatcacttaaactaataaatactggggtctggaattcaacttgtattcat
tggatatgaaaatgtaaaaaaaaaatcattgtctaacaaccttcacacat
atgtgggagatggtgatggcatttcttaaaagatcttctcattaagcatg
aaatatggtgtgctaaattcagaaggaaaaatactgacaggactcatata
agtcatatattggaatttggatgtcatatattagacatgaatagttagaa
gaaggtcatgttgatgtccatggacatgttaccattgaacatcatgtgga
tatctgggatctgtgctgccacttgagccatactgaaatctgtggtcttg
ccagccaatgggggccatgtcagtgtttatggcccttgttgtccatggag
gcaatgttgaaatatgtggtctagcatggctgtcctccatgaagcccaac
aaagagctgactgagactgatacagatgtttatacccaaccaatggactg
aagttggggaccactatggttgaattagggaaaggctaaaagaagttgag
gcggagggtgaccccataggaaggacatgagtctcaactaacctggaccc
ctgagatctctcagacactgaacaccaaccaggcagcatacactagctag
tccaaggccccagcatatattcagcataggactgcccagtctggccttag
tgagagaagtcatgcctaactcttagatacttgagccacagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_105554453_105555090
seq2: B6Ng01-068H23.b_47_682 (reverse)

seq1  CATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGG  50
      ||||||||||||||| ||||||||||||||||||||||||||||| ||||
seq2  CATCAGATCCTTCTA-AAAAGGCTATACTCAACAAAACTGGAAAATCTGG  49

seq1  ATGAAATGGACAAGTTTCTAGACAGATACCAGGTACCAAAGCTAAATCAA  100
      ||||||||||||| ||||||| ||||||||||||||||||| ||||||| 
seq2  ATGAAATGGACAAATTTCTAGGCAGATACCAGGTACCAAAGTTAAATCAG  99

seq1  GATCAGGTTAATGATCTAAGACGTCTTATATCCCCTAAAGAAATAGAAGC  150
      |||||||| ||||||  ||   ||| |||||||||||||||||||| |||
seq2  GATCAGGTGAATGATAAAAACAGTCCTATATCCCCTAAAGAAATAGGAGC  149

seq1  AGTCATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTA  200
      | |||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AATCATTAATAGTCTCCCAACCAAAAAAAGTCCAGGACCAGATGGGTTTA  199

seq1  GTGCAGAGTTCTGTCAGACCTTCAAAGAAGACCTAATTCCAGTTCTTCAC  250
      |||||||||||| ||||| |||||||||  |  ||||| |||||||||| 
seq2  GTGCAGAGTTCTATCAGATCTTCAAAGACAATTTAATTTCAGTTCTTCAT  249

seq1  AAACTATTCCACAAAATAGAAACGGAAGGTACTCTACCCAACTCATTCTA  300
      |||| |     |||||||||| | ||||||||||||||||| ||||||||
seq2  AAAC-AAGAAGCAAAATAGAAGCAGAAGGTACTCTACCCAATTCATTCTA  298

seq1  TGAAGCCACAATTACTCTGATACCTAAACCACAAAAAGACCCCACAAAGA  350
      ||||||||||||| ||||||||||||||||||| |||||| | |||||||
seq2  TGAAGCCACAATTGCTCTGATACCTAAACCACAGAAAGACTCAACAAAGA  348

seq1  TAGAGAACATCAGACCAATTTCAATTATGAATATCGATGCAAAAATCCTC  400
      |||||||| |||||||||||||  | ||||||||| ||||||||||| ||
seq2  TAGAGAACTTCAGACCAATTTCCCTGATGAATATCAATGCAAAAATCTTC  398

seq1  AATAAAGTTCTTGCTAACCGAATCCAAGAACACATCAAAACAATCATCCA  450
      |||||| |||| |||||||||||||||||||| |||||||||||||||||
seq2  AATAAAATTCTAGCTAACCGAATCCAAGAACATATCAAAACAATCATCCA  448

seq1  TCCTGACCAAGTAGGTTTCATCCCAGGGATGCAGGGATGGTTCAATATAC  500
      ||||| |||||||||||||| |||||||||||||||| | || |||||||
seq2  TCCTGGCCAAGTAGGTTTCACCCCAGGGATGCAGGGAGGATTTAATATAC  498

seq1  GGAAATCCATCAACGTAATCCAGTATATAAACAAACTCAAAGACAAAAAC  550
      |||||||||||||| ||||||| |||||||||||||||||||||||||||
seq2  GGAAATCCATCAACATAATCCATTATATAAACAAACTCAAAGACAAAAAC  548

seq1  CACATGATCATCTCCTTAGATGCTGAGAAAGCATTTGACAAAATCCAAAA  600
      |||||||||||||| ||||||||||||||||||||||||||||||||| |
seq2  CACATGATCATCTCTTTAGATGCTGAGAAAGCATTTGACAAAATCCAACA  598

seq1  CCCATTCATGATAAAAGTCTTGGAAAGATCAGGAATTC  638
       |||||||||||||||||||||||||||||||||||||
seq2  TCCATTCATGATAAAAGTCTTGGAAAGATCAGGAATTC  636

seq1: chr10_54345938_54346933
seq2: B6Ng01-068H23.g_68_1059

seq1  GAATTCCAAATAGCTTGGAGCAGAAAAGAAATTCCTCCCATCACAGAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATAGCTTGGAGCAGAAAAGAAATTCCTCCCATCACAGAATA  50

seq1  GTCAAAACACCAAATTCACAAAACAAAGAAAGAATATTACAGGCTAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAACACCAAATTCACAAAACAAAGAAAGAATATTACAGGCTAATAA  100

seq1  TTCTTAGATTAACCTTCCTTTATGTTGTTTTGTGTGGCAAGCATGCTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGATTAACCTTCCTTTATGTTGTTTTGTGTGGCAAGCATGCTATC  150

seq1  TCAGCCCACAGAATAATTTTTCCAATAGCAAAACAAATATCCTGGTACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCCACAGAATAATTTTTCCAATAGCAAAACAAATATCCTGGTACTA  200

seq1  TAATTGGATGTGGACAATAGGTTTTTAGTTTAGGTAGGTAGCCTATTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGGATGTGGACAATAGGTTTTTAGTTTAGGTAGGTAGCCTATTAAA  250

seq1  TATCACTTAAACTAATAAATACTGGGGTCTGGAATTCAACTTGTATTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTTAAACTAATAAATACTGGGGTCTGGAATTCAACTTGTATTCAT  300

seq1  TGGATATGAAAATGTAAAAAAAAAATCATTGTCTAACAACCTTCACACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATGAAAATGTAAAAAAAAAATCATTGTCTAACAACCTTCACACAT  350

seq1  ATGTGGGAGATGGTGATGGCATTTCTTAAAAGATCTTCTCATTAAGCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGAGATGGTGATGGCATTTCTTAAAAGATCTTCTCATTAAGCATG  400

seq1  AAATATGGTGTGCTAAATTCAGAAGGAAAAATACTGACAGGACTCATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGGTGTGCTAAATTCAGAAGGAAAAATACTGACAGGACTCATATA  450

seq1  AGTCATATATTGGAATTTGGATGTCATATATTAGACATGAATAGTTAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATATATTGGAATTTGGATGTCATATATTAGACATGAATAGTTAGAA  500

seq1  GAAGGTCATGTTGATGTCCATGGACATGTTACCATTGAACATCATGTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTCATGTTGATGTCCATGGACATGTTACCATTGAACATCATGTGGA  550

seq1  TATCTGGGATCTGTGCTGCCACTTGAGCCATACTGAAATCTGTGGTCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGGGATCTGTGCTGCCACTTGAGCCATACTGAAATCTGTGGTCTTG  600

seq1  CCAGCCAATGGGGGCCATGTCAGTGTTTATGGCCCTTGTTGTCCATGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCAATGGGGGCCATGTCAGTGTTTATGGCCCTTGTTGTCCATGGAG  650

seq1  GCAATGTTGAAATATGTGGTCTAGCATGGCTGTCCTCCATGAAGCCCAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTTGAAATATGTGGTCTAGCATGGCTGTCCTCCATGAAGCCCAAC  700

seq1  AAAGAGCTGACTGAGACTGATACAGATGTTTATACCCAACCAATGGACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCTGACTGAGACTGATACAGATGTTTATACCCAACCAATGGACTG  750

seq1  AAGTTGGGGACCACTATGGTTGAATTAGGGAAAGGCTAAAAGAAGTTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGGGGACCACTATGGTTGAATTAGGGAAAGGCTAAAAGAAGTTGAG  800

seq1  GCGGAGGGTGACCCCATAGGAAGGACATGAGTCTCAACTAACCTGGACCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGAGGGTGACCCCATAGGAAGGACATGAGTCTCAACTAACCTGGACCC  850

seq1  CTGAGATCTCTCAGACACTGAAACACCAACCAGGCAGCATACACTAGCTA  900
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTGAGATCTCTCAGACACTG-AACACCAACCAGGCAGCATACACTAGCTA  899

seq1  GTCCAAGGCCCCCAGCATATATTCAGCATAGGACTGCCCAGTCTGGCCTT  950
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAGG-CCCCAGCATATATTCAGCATAGGACTGCCCAGTCTGGCCTT  948

seq1  AGTGAGAGAAGTCATGCCTAACCCTTGAGATACTTGAGGCCACAGG  996
      |||||||||||||||||||||| ||| |||||||||| ||||||||
seq2  AGTGAGAGAAGTCATGCCTAACTCTT-AGATACTTGA-GCCACAGG  992