BAC Information

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BAC

Clone NameB6Ng01-069N08
Chromosome10 (Build37)
Map Location 12,924,870 - 12,926,004
singlet/doubletsinglet
Overlap geneLOC666829
Upstream geneUtrn, LOC665172, Stx11, Sf3b5, Plagl1, 4930519B02Rik, Ltv1
Downstream genePhactr2, LOC100039475, Fuca2, Pex3, Deadc1, Aig1, EG666859, Hivep2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069N08.bB6Ng01-069N08.g
ACCDH888018DH888019
length1,138567
definitionDH888018|Mus musculus domesticus DNA, BAC clone: B6Ng01-069N08, 5' end.DH888019|Mus musculus domesticus DNA, BAC clone: B6Ng01-069N08, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccattgctcctctacaatggaggtaaggaagattgtgtctgaagt
gtaggagatcctgtagagtatgtcttgacgttcctatgtcctttgactaa
catcaatgggaaactataataaccagatccaggctgttgggtgcctaccc
cttgctgtcaaaatggtcaagttcatgaaacccaggaaaatggtgctggt
tctggctggatgctactcgggactcaaagccatcatcatgaagaacattg
acgatggcacctcagaccacccttacagccataccctggtggctggaatt
gaccactatcccccctccccccaaaatgacagctgccatgggcaagaaga
aaatcgccaagcaatccaagatcaagtcctttgtaaaagtatataactac
aaccacctcatgcccacaaggtactctgtggatatccccttggacaagac
tattgtcaaaaaggatgtgttcagagacttggctttgaaacacacagggc
caggtgggaggccaagatcaagtttgaggagctacacaagacaaggaaga
acaaatagtttttccagaagctttgcttttagatatatttttgtttttgt
cattaaaaattaacaaacaaacaaacgaaaccaaccagctccaggcagga
tgataatgggtcaagaccttcaggagaagatatgagtcactcctccagga
cctgccgaggtactttgccaagggtataagaatgcagaataagcagcaga
agttgagaataccagctaaggtcatatgaccagttgcagaaacaaggatt
ataattgacattagtgtttctgtcatgtctttgttaagaatgtgtttgtg
catatatagatagacacatattgagcagattgttgtatttgtgcagatat
agatagacacatattgagcagacattttgttgtgtttgtgcatatatgga
tagacacatattgagcagacatttgttgtgtttctctccccatcttcatt
acgtaatgtaacaccagttgcggataatattcagtggtttcatatttaag
tggtgagaaattgaaagaattgcaccgtggcagggacatgccacctattc
caaataattaatgcacttcatactttgtccatggatag

tcagcaccttctccagcaccatgtctgcctgcacgctgccatgcttcctg
ccatgatgataatggcctgagcctctgaaactgtaagccagctccagtta
aaattttgccattatgagagttgccttggtcatggtgtttcttcacagca
acggaacccaaactaagacattgggtatgtatgtgtcattggtggttatg
tatgtgtctgtacactggtgtgcatgtgtgcatgctcatgtaaaagccag
tggctgtgtgtgactttttacataggtgctgagtggagatcagagctcag
gacctcgtgcttggacagcaagcttttatccactgaaccacttcagcagc
actcagttaagatatgaactattttctgtgatgtgggtaatagcactact
ttacaggtgaggaaccccacttcaactgaaaataacctaactcaaagtcc
tcttattaaagagtgagctctgagttctctgtcagaaacaaagtgatggc
ttatatctgaaattccaggatctggaaagtggatacagaagaattagaaa
ttaaggtcaccctggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_12924870_12926004
seq2: B6Ng01-069N08.b_47_1184

seq1  GAATTCCATTGCTCCTCTACAATGGAGGTAAGGAAGATTGTGTCTGAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTGCTCCTCTACAATGGAGGTAAGGAAGATTGTGTCTGAAGT  50

seq1  GTAGGAGATCCTGTAGAGTATGTCTTGACGTTCCTATGTCCTTTGACTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAGATCCTGTAGAGTATGTCTTGACGTTCCTATGTCCTTTGACTAA  100

seq1  CATCAATGGGAAACTATAATAACCAGATCCAGGCTGTTGGGTGCCTACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATGGGAAACTATAATAACCAGATCCAGGCTGTTGGGTGCCTACCC  150

seq1  CTTGCTGTCAAAATGGTCAAGTTCATGAAACCCAGGAAAATGGTGCTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGTCAAAATGGTCAAGTTCATGAAACCCAGGAAAATGGTGCTGGT  200

seq1  TCTGGCTGGATGCTACTCGGGACTCAAAGCCATCATCATGAAGAACATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTGGATGCTACTCGGGACTCAAAGCCATCATCATGAAGAACATTG  250

seq1  ACGATGGCACCTCAGACCACCCTTACAGCCATACCCTGGTGGCTGGAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATGGCACCTCAGACCACCCTTACAGCCATACCCTGGTGGCTGGAATT  300

seq1  GACCACTATCCCCCCTCCCCCCAAAATGACAGCTGCCATGGGCAAGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACTATCCCCCCTCCCCCCAAAATGACAGCTGCCATGGGCAAGAAGA  350

seq1  AAATCGCCAAGCAATCCAAGATCAAGTCCTTTGTAAAAGTATATAACTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCGCCAAGCAATCCAAGATCAAGTCCTTTGTAAAAGTATATAACTAC  400

seq1  AACCACCTCATGCCCACAAGGTACTCTGTGGATATCCCCTTGGACAAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCTCATGCCCACAAGGTACTCTGTGGATATCCCCTTGGACAAGAC  450

seq1  TATTGTCAAAAAGGATGTGTTCAGAGACTTGGCTTTGAAACACACAGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTCAAAAAGGATGTGTTCAGAGACTTGGCTTTGAAACACACAGGGC  500

seq1  CAGGTGGGAGGCCAAGATCAAGTTTGAGGAGCTACACAAGACAAGGAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGGAGGCCAAGATCAAGTTTGAGGAGCTACACAAGACAAGGAAGA  550

seq1  ACAAATAGTTTTTCCAGAAGCTTTGCTTTTAGATATATTTTTGTTTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAGTTTTTCCAGAAGCTTTGCTTTTAGATATATTTTTGTTTTTGT  600

seq1  CATTAAAAATTAACAAACAAACAAACGAAACCAACCAGCTCCAGGCAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAAATTAACAAACAAACAAACGAAACCAACCAGCTCCAGGCAGGA  650

seq1  TGATAATGGGTCAAGACCTTCAGGAGAAGATATGAGTCACTCCTCCAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATGGGTCAAGACCTTCAGGAGAAGATATGAGTCACTCCTCCAGGA  700

seq1  CCTGCCGAGGTAC-TTGCCAAGGGTATAAGAAATGCAGAATAAGCAGCAG  749
      ||||||||||||| |||||||||||||||| |||||||||||||||||||
seq2  CCTGCCGAGGTACTTTGCCAAGGGTATAAG-AATGCAGAATAAGCAGCAG  749

seq1  AAGTTGAGAATACCAGCTAAGGTCATATGACCAGTTGCAGAAACAAGGAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGAGAATACCAGCTAAGGTCATATGACCAGTTGCAGAAACAAGGAT  799

seq1  TATAATTGACATTAGTGTTTCTGTCATGTC-TTGTTAAGAATGTGTTTGT  848
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TATAATTGACATTAGTGTTTCTGTCATGTCTTTGTTAAGAATGTGTTTGT  849

seq1  GCATATATAGATAGACACATATTGAGCAGATTGTTGTATTTGTGCAGATA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATATAGATAGACACATATTGAGCAGATTGTTGTATTTGTGCAGATA  899

seq1  TAGATAGACACATATTGAGCAGACA-TTTGTTGTGTTTGTGCATATATGG  947
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TAGATAGACACATATTGAGCAGACATTTTGTTGTGTTTGTGCATATATGG  949

seq1  ATAGACACATATTGAGCAGACATTTGTTGTGTTTTCTCTCCCCATCTTCA  997
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATAGACACATATTGAGCAGACATTTGTTGTG-TTTCTCTCCCCATCTTCA  998

seq1  TTACGTAATGTAACACCAG-TGC-GATAATA-TCAGTGGTTATCATATTT  1044
      ||||||||||||||||||| ||| ||||||| ||||||||| ||||||||
seq2  TTACGTAATGTAACACCAGTTGCGGATAATATTCAGTGGTT-TCATATTT  1047

seq1  AAGTGGTGAGACATTGAAAGAA-TGCACCGTGCAAGGGACATTGCCACCT  1093
      ||||||||||| |||||||||| |||||||||  ||||||| ||||||||
seq2  AAGTGGTGAGAAATTGAAAGAATTGCACCGTGGCAGGGACA-TGCCACCT  1096

seq1  ATTCCAAAATATATAATGCAC-TCATAC-TTGTCCATGGGATAG  1135
      ||||| |||||  |||||||| |||||| |||||||| ||||||
seq2  ATTCC-AAATAATTAATGCACTTCATACTTTGTCCAT-GGATAG  1138


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