BAC Information

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BAC

Clone NameB6Ng01-072C06
Chromosome10 (Build37)
Map Location 99,409,368 - 99,537,604
singlet/doubletdoublet
Overlap geneKitl
Upstream geneAtp2b1, Wdr51b, Galnt4, Dusp6, LOC100042222, Gad1-ps, LOC100042232, LOC667502, Csl, LOC100042246
Downstream geneLOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072C06.bB6Ng01-072C06.g
ACCDH889637DH889638
length1,1711,131
definitionDH889637|Mus musculus domesticus DNA, BAC clone: B6Ng01-072C06, 5' end.DH889638|Mus musculus domesticus DNA, BAC clone: B6Ng01-072C06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,409,368 - 99,410,552)(99,536,468 - 99,537,604)
sequence
gaattcagcaaaacagctacattttttattaataccatcgtcccttctaa
attatgcctacagatttgtatgatgtttgccttatcgtttaagttcctgt
cataaatttctgaggttgtccttacgaacaaacgctagggcaagaatttc
agtgtaagtcatttatctcggaggttattgtagaaagcattagagggaaa
gtcagtcagacagaagactaagcttaaaacaaaaaccattcagaatccag
ctaattatccctgagggcccactgtgaagcaccctgagaaatagagtaga
atgtttctcaaaggtacccacacaagtggtgagacctaggcagtcgtgtg
ccctgtaactgtatctcagtcactgatggaaagtatcacttgtggtccag
caagatcccatcctctgagggatcacaaccaccttagcctgtgtatcatg
gtcacaaagcatcgcttgcctgatgaagcgtgcctcaggatgtgttccca
gcagtagccagctcataaatggattaacttcgtagatttcctcttcttgg
tatcatattgattaatttgaggagcatgagacaccagtcacttctagttc
tcctacaccactatccaccccatatcctaaagcactaagcatgcatgcag
gttgaataaaagcctgaaggtagaactgttctcaaagttgctctgggatt
ccattaacaacacatcaaaatggagtcactggaatggaaattttgctgta
aataaactttggaggattttgcttctgatataatgttggaaatgcaaggc
taagcacggtaaggagaacttgaaaacactaactaaagcacacatagact
taaataatctgcccaccctgcgatatacatcatttgctctcctatatgca
aaatgtcatcttgcttattcaaactgtgggtggtgctatgtgttagattt
gttttgcctctgcaaatctacattctaattcagtccctgatttcacagtg
ttgggccagggtcaagacatttagtggtgaataagtgtttaagaaagata
attgccttcctcagactgagtattaacatatggtgagagaattgtcaggt
caacaaagactggagggcttcttaacggttgatctgcaaagtgagtttgc
tgcttctggaagttttgttcc
gaattctctgtttgggttgatatttttggcccagttgttcttcaaaactt
gcattctttattatcagagtactcacagtaattaatgtcacataaaatca
gtccaactaataaatctaatttccctattaaccagcaggtggaaacaagt
aatttgttaagttattataaattatagagctattttatacttatttcaca
gaacagttttaactaacataatatagaaaaaaatgaaattggtttataca
aagattggtatgctccaattcctacaggcaagcattaaacattttagaat
gttgcctttggtttcaggaaagaaataaacaaacatacaagggcagcaga
gaatgtagctcaatgacagggcaagttgcctagcttgcgcaaggcccagg
gttcaattccaagcatcataaacgggaatgggaaagaaaagaagaacaag
caaaaggtgacaagggagaccgtgtggtcactaactcaccttaactcagc
tctgagagtctttgtgtttctcaggtacatctagaacatgttctttgttt
tgctcaaaccccatttatcggaagcccaggcaaattcctatttatattat
tatcaagccagtaagtcccttgcaaagccctttcatggtgactcactctg
tgagtttctctcctattgggcggcgataatttcttttaggtggcggccat
ctgagcacgtgataggatggtggcagcacatgccatgatgccatttgtgt
agcaatcaaacaatacagtagcctccaccaagatgtacaatcagccacgg
gctattcaattttacaaggataatagattccatgtattatgatcttaaaa
tcatgtgaccgatactcttgctgatctgctcggacctctagacacaatca
attttctgaacttttaattgaggcactccttttatcttgtgttgttcctt
ttaagtaagaaaatgttctttctctcttctctgtctgtgccccaaagacc
ctagttacagtacagggctgtgctctctcgttccttattttacctggcag
ttcctataatagttactatccttttgtttaagctttattatggacattac
atctttatttaacgcgtaacctccctcattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_99409368_99410552
seq2: B6Ng01-072C06.b_45_1215

seq1  GAATTCAGCAAAACAGCTACATTTTTTATTAATACCATCGTCCCTTCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAAAACAGCTACATTTTTTATTAATACCATCGTCCCTTCTAA  50

seq1  ATTATGCCTACAGATTTGTATGATGTTTGCCTTATCGTTTAAGTTCCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGCCTACAGATTTGTATGATGTTTGCCTTATCGTTTAAGTTCCTGT  100

seq1  CATAAATTTCTGAGGTTGTCCTTACGAACAAACGCTAGGGCAAGAATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATTTCTGAGGTTGTCCTTACGAACAAACGCTAGGGCAAGAATTTC  150

seq1  AGTGTAAGTCATTTATCTCGGAGGTTATTGTAGAAAGCATTAGAGGGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAAGTCATTTATCTCGGAGGTTATTGTAGAAAGCATTAGAGGGAAA  200

seq1  GTCAGTCAGACAGAAGACTAAGCTTAAAACAAAAACCATTCAGAATCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTCAGACAGAAGACTAAGCTTAAAACAAAAACCATTCAGAATCCAG  250

seq1  CTAATTATCCCTGAGGGCCCACTGTGAAGCACCCTGAGAAATAGAGTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTATCCCTGAGGGCCCACTGTGAAGCACCCTGAGAAATAGAGTAGA  300

seq1  ATGTTTCTCAAAGGTACCCACACAAGTGGTGAGACCTAGGCAGTCGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCTCAAAGGTACCCACACAAGTGGTGAGACCTAGGCAGTCGTGTG  350

seq1  CCCTGTAACTGTATCTCAGTCACTGATGGAAAGTATCACTTGTGGTCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTAACTGTATCTCAGTCACTGATGGAAAGTATCACTTGTGGTCCAG  400

seq1  CAAGATCCCATCCTCTGAGGGATCACAACCACCTTAGCCTGTGTATCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCCCATCCTCTGAGGGATCACAACCACCTTAGCCTGTGTATCATG  450

seq1  GTCACAAAGCATCGCTTGCCTGATGAAGCGTGCCTCAGGATGTGTTCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAAAGCATCGCTTGCCTGATGAAGCGTGCCTCAGGATGTGTTCCCA  500

seq1  GCAGTAGCCAGCTCATAAATGGATTAACTTCGTAGATTTCCTCTTCTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAGCCAGCTCATAAATGGATTAACTTCGTAGATTTCCTCTTCTTGG  550

seq1  TATCATATTGATTAATTTGAGGAGCATGAGACACCAGTCACTTCTAGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATATTGATTAATTTGAGGAGCATGAGACACCAGTCACTTCTAGTTC  600

seq1  TCCTACACCACTATCCACCCCATATCCTAAAGCACTAAGCATGCATGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACACCACTATCCACCCCATATCCTAAAGCACTAAGCATGCATGCAG  650

seq1  GTTGAATAAAAGCCTGAAGGTAGAACTGTTCTCAAAGTTGCTCTGGGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAATAAAAGCCTGAAGGTAGAACTGTTCTCAAAGTTGCTCTGGGATT  700

seq1  CCATTAACAACACATCAAAATGGAGTCACTGGAATGGAAATTTTGCTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAACAACACATCAAAATGGAGTCACTGGAATGGAAATTTTGCTGTA  750

seq1  AATAAACTTTGGAGGATTTTGCTTCTGATATAATGTTGGAAATGCAAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACTTTGGAGGATTTTGCTTCTGATATAATGTTGGAAATGCAAGGC  800

seq1  TAAGCACGGTAAGGAGAACTTGAAAACACTAACTAAAGCACACATAGACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCACGGTAAGGAGAACTTGAAAACACTAACTAAAGCACACATAGACT  850

seq1  TAAATAATCTGCCCACCCTGCGATATACATCATTTGCTCTCCTATATGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATCTGCCCACCCTGCGATATACATCATTTGCTCTCCTATATGCA  900

seq1  AAATGTCATCTTGCTTATTCAAACTGTGGGTGGTGCTATGTGTTAGATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCATCTTGCTTATTCAAACTGTGGGTGGTGCTATGTGTTAGATTT  950

seq1  GTTTTGCCTCTGCAAAATCTACATTCTAATTCAGTCCCTGATTTCACAGT  1000
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCCTCTGC-AAATCTACATTCTAATTCAGTCCCTGATTTCACAGT  999

seq1  GTT-GGCCAGGGTCAAAGACATTTAAGTGGTGAATAAGTTGTTTAAGATA  1049
      ||| |||||||||| ||||||||| ||||||||||||| ||||||||| |
seq2  GTTGGGCCAGGGTC-AAGACATTT-AGTGGTGAATAAG-TGTTTAAGAAA  1046

seq1  GATTAATGGCCTTCCCTCAAGACTGAGTTAATTACCATAATGGTGAGAGA  1099
      || |||| ||||| |||| |||||||||  |||| ||| |||||||||||
seq2  GA-TAATTGCCTT-CCTC-AGACTGAGT--ATTAACAT-ATGGTGAGAGA  1090

seq1  ATTGTCA-GTCTACAAGGACTGGAGTGCTTCTTACAGGGTGAATGGTTGC  1148
      ||||||| ||| |||| |||||||| ||||||||  || |||     |||
seq2  ATTGTCAGGTCAACAAAGACTGGAGGGCTTCTTAACGGTTGA---TCTGC  1137

seq1  AAAGTGAGTTTGCTGCCTCTGGGGACATTTTTGTTCC  1185
      |||||||||||||||| |||||    | |||||||||
seq2  AAAGTGAGTTTGCTGCTTCTGG---AAGTTTTGTTCC  1171

seq1: chr10_99536468_99537604
seq2: B6Ng01-072C06.g_68_1198 (reverse)

seq1  AAATGAGTGAGGTTATGCGTTAATAGAAGATGTAATGTCAATAATAAAGC  50
      ||||||| ||||||| |||||||   ||||||||||||| ||||||||||
seq2  AAATGAGGGAGGTTACGCGTTAAATAAAGATGTAATGTCCATAATAAAGC  50

seq1  TGAACAGAAGGGATAGTAACTATTATA-GAACTGCCCAGGTTAAAAATAA  99
      | ||   || ||||||||||||||||| |||||| ||||||  |||||||
seq2  TTAAACAAAAGGATAGTAACTATTATAGGAACTG-CCAGGT--AAAATAA  97

seq1  GGAACGAGAGAGCACAGGCCTGTACTGTAACTAGGGGTCTTTTGGGGGCA  149
      ||||||||||||||||| ||||||||||||||| ||||||||  ||||||
seq2  GGAACGAGAGAGCACAGCCCTGTACTGTAACTA-GGGTCTTT--GGGGCA  144

seq1  CAGAACAAGAGAAGAGAGAAAGAACATTTTC-TACTTAAAAGGAACAACC  198
      ||||   |||||||||||||||||||||||| |||||||||||||||| |
seq2  CAGA--CAGAGAAGAGAGAAAGAACATTTTCTTACTTAAAAGGAACAA-C  191

seq1  ACAAGATAAAAGGAGTGCCTCAATTAAAAGTTCAGAAAATTGATTGTGTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATAAAAGGAGTGCCTCAATTAAAAGTTCAGAAAATTGATTGTGTC  241

seq1  TAGAGGTCCGAGCAGATCAGCAAGAGTATCGGTCACATGATTTTAAGATC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGTCCGAGCAGATCAGCAAGAGTATCGGTCACATGATTTTAAGATC  291

seq1  ATAATACATGGAATCTATTATCCTTGTAAAATTGAATAG-CCGTGGCTGA  347
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATAATACATGGAATCTATTATCCTTGTAAAATTGAATAGCCCGTGGCTGA  341

seq1  TTGTACATCTTGGTGGAGGCTACTGTATTGTTTGATTGCTACACAAATGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACATCTTGGTGGAGGCTACTGTATTGTTTGATTGCTACACAAATGG  391

seq1  CATCATGGCATGTGCTGCCACCATCCTATCACGTGCTCAGATGGCCGCCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGGCATGTGCTGCCACCATCCTATCACGTGCTCAGATGGCCGCCA  441

seq1  CCTAAAAGAAATTATCGCCGCCCAATAGGAGAGAAACTCACAGAGTGAGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAAGAAATTATCGCCGCCCAATAGGAGAGAAACTCACAGAGTGAGT  491

seq1  CACCATGAAAGGGCTTTGCAAGGGACTTACTGGCTTGATAATAATATAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGAAAGGGCTTTGCAAGGGACTTACTGGCTTGATAATAATATAAA  541

seq1  TAGGAATTTGCCTGGGCTTCCGATAAATGGGGTTTGAGCAAAACAAAGAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATTTGCCTGGGCTTCCGATAAATGGGGTTTGAGCAAAACAAAGAA  591

seq1  CATGTTCTAGATGTACCTGAGAAACACAAAGACTCTCAGAGCTGAGTTAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCTAGATGTACCTGAGAAACACAAAGACTCTCAGAGCTGAGTTAA  641

seq1  GGTGAGTTAGTGACCACACGGTCTCCCTTGTCACCTTTTGCTTGTTCTTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGTTAGTGACCACACGGTCTCCCTTGTCACCTTTTGCTTGTTCTTC  691

seq1  TTTTCTTTCCCATTCCCGTTTATGATGCTTGGAATTGAACCCTGGGCCTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTCCCATTCCCGTTTATGATGCTTGGAATTGAACCCTGGGCCTT  741

seq1  GCGCAAGCTAGGCAACTTGCCCTGTCATTGAGCTACATTCTCTGCTGCCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCAAGCTAGGCAACTTGCCCTGTCATTGAGCTACATTCTCTGCTGCCC  791

seq1  TTGTATGTTTGTTTATTTCTTTCCTGAAACCAAAGGCAACATTCTAAAAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGTTTGTTTATTTCTTTCCTGAAACCAAAGGCAACATTCTAAAAT  841

seq1  GTTTAATGCTTGCCTGTAGGAATTGGAGCATACCAATCTTTGTATAAACC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATGCTTGCCTGTAGGAATTGGAGCATACCAATCTTTGTATAAACC  891

seq1  AATTTCATTTTTTTCTATATTATGTTAGTTAAAACTGTTCTGTGAAATAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCATTTTTTTCTATATTATGTTAGTTAAAACTGTTCTGTGAAATAA  941

seq1  GTATAAAATAGCTCTATAATTTATAATAACTTAACAAATTACTTGTTTCC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAAATAGCTCTATAATTTATAATAACTTAACAAATTACTTGTTTCC  991

seq1  ACCTGCTGGTTAATAGGGAAATTAGATTTATTAGTTGGACTGATTTTATG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTGGTTAATAGGGAAATTAGATTTATTAGTTGGACTGATTTTATG  1041

seq1  TGACATTAATTACTGTGAGTACTCTGATAATAAAGAATGCAAGTTTTGAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTAATTACTGTGAGTACTCTGATAATAAAGAATGCAAGTTTTGAA  1091

seq1  GAACAACTGGGCCAAAAATATCAACCCAAACAGAGAATTC  1137
      ||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACTGGGCCAAAAATATCAACCCAAACAGAGAATTC  1131