BAC Information

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BAC

Clone NameB6Ng01-072H11
Chromosome10 (Build37)
Map Location 77,435,715 - 77,612,719
singlet/doubletdoublet
Overlap gene1810043G02Rik, Pfkl, Aire, Dnmt3l, Icosl
Upstream geneLOC100041099, Slc19a1, Col18a1, LOC665762, Pofut2, Adarb1, 1810008A18Rik, Itgb2, Pttg1ip, Sumo3, Ube2g2, LOC674243, LOC670895, Krtap12-1, A030009A09Rik, LOC100041250, LOC100041261, LOC634517, LOC100041281, LOC634504, LOC675294, LOC670880, LOC100040299, LOC675238, C330046G03Rik, EG544710, LOC100041351, 1700009J07Rik, Lrrc3, Trpm2
Downstream geneD10Jhu81e, Pwp2, Tmem1, Agpat3, LOC100041500, Rrp1, Cstb, Pdxk, EG665862, Olfr1358, LOC546482, Ilvbl, Syde1, Olfr1357, LOC665890, Casp14, Ccdc105, Slc1a6, Olfr1356, GA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57, 2610008E11Rik, EG624765
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072H11.bB6Ng01-072H11.g
ACCDH889878DH889879
length1,1691,132
definitionDH889878|Mus musculus domesticus DNA, BAC clone: B6Ng01-072H11, 5' end.DH889879|Mus musculus domesticus DNA, BAC clone: B6Ng01-072H11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,435,715 - 77,436,895)(77,611,577 - 77,612,719)
sequence
gaattcttttccaggggagatgtatgcaatgtcaaatgtacacacacacc
tccatatatggtcttaaccacaaaccaaactgagatgtcaccaaagttca
ccttggagaaccaatgattttactgggcttacttatagaaaatgcatgtg
acattactggtgggaatctttgggggtggggcatcaaagaagctacactg
gaaagtcttcaggcagtatggatgatagcttcccccaacagcctcgtaga
tgcagcccccttccattagcctcctctgcttatttactctctcatgtccc
aagaccacatgcaactaaggacaaagttggatacaaatggctggggggga
aggcaggctaaactctcgggtgagggtccaatgacctccccctaacccct
cattctatcagagaacatcaatagtcagccaggctactctgaatgacctc
ttgaaaattagcacagttaatctgatggcgatgacattttacaacagccg
cattcctcttctgtgggggcagaagaagaggtaggcgtcaagtgtggggt
agctgtttcctctgaattgaaatttttacttgttaagggagaatggaggg
ctcataagattgaaaaacagcaaaggaaactcacaaggctcaggaagctc
agaaagttacaagactcacagccgggcgtggtggcgcacgcctttaatcc
cagcactcgggaggcagaggcaggcggatttctgagttcgaggccagcct
ggtctacaaagtgagctccaggacagccagggctatacagagaaaccctg
tctcaaaacaaaacaaaacaaaaaaaaaaaaaaaaaacaaaaaaaagact
cacaaggcccctcccaaggttagataacagttacagttgctgagatgagg
agactttctgagcacccactgcctacagtccttcagggagcttgatggat
acaactttggtggggtggtcacccatgttcctataatgaaccccataaac
tccttcagtttatcaactggagaggagattgttttttttggtcttgtggt
cattggccttaagatgattgttttgtgttctttttaggaaaagccacaac
cttagaaatgaacctcagctcccagagagggaacagcgcatttagagtgt
cagcacaggctgggagaga
gaattctgtgagggcacagatgagcccattcacgggggtaagctgaggca
tgaggggggtgcacatcaaagacataatggttcacaggagagacctcagc
agggtccccatctatatctatggccagtacctggattgtcccatctgctg
ggtcccaactgctaggtcccctctgctgcctggtaccctttattcctggc
atctgtgggcaggacaatggatatttcacaggacaggtgctgctaagaac
gcccttggtgctgggttgtgttcttaattttagtttctcaggagccaccg
gagcccctaggttgtatagatctattgctgagattcaccagatggcataa
cagcactccacagctgactcgggccaagccctagctctgtggcagggcca
gcatttcctgaagggaaagcatcccccagcacgtcattggctccctcgat
tttaaactctgctctcggcttccttaagacctgtgcactcatgtgtgccc
tgagctccaggctctgctaacttccctgaccaagaaaggaatttgtggag
ttgccttcaaaccatggcatcttttttggtgctttaaaaaaaaaaaaaaa
aagttcttttagaattttctgtcttgtgtcatgcatccctgaacttcctg
gtttgagccgaatagcagaagttctaaaatatttcacattaagcatcttt
tggtgtttctgacatggccccaaacaggaagttccagaggtctgtcacag
aaagtctatgtcctggcctctgtgagtgccccaggattccagacagtacc
tgggagataccatggaacctgtttgaaccgaaaatgacatgagaaactgg
atttgtctgcattaaggctctgagttaatttgctgtgctactgtagtaaa
agagcacacagtgggaccatagcatttattgcacccctactaagcaggtg
cccaggcctcctgcccagctctatacacattgggtggggcttgctgcttc
ggttgctcttctgaaaaatcacatgaggcaaataggaggctagagagatg
ggtatattcaggaaggcttggtacttctaagaaccatgcctgagccacca
ctgacacgtttcagtggcatgggattctctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_77435715_77436895
seq2: B6Ng01-072H11.b_45_1213

seq1  GAATTCTTTTCCAGGGGAGATGTATGCAATGTCAAATGTACACACACACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCCAGGGGAGATGTATGCAATGTCAAATGTACACACACACC  50

seq1  TCCATATATGGTCTTAACCACAAACCAAACTGAGATGTCACCAAAGTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATATGGTCTTAACCACAAACCAAACTGAGATGTCACCAAAGTTCA  100

seq1  CCTTGGAGAACCAATGATTTTACTGGGCTTACTTATAGAAAATGCATGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGAGAACCAATGATTTTACTGGGCTTACTTATAGAAAATGCATGTG  150

seq1  ACATTACTGGTGGGAATCTTTGGGGGTGGGGCATCAAAGAAGCTACACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTACTGGTGGGAATCTTTGGGGGTGGGGCATCAAAGAAGCTACACTG  200

seq1  GAAAGTCTTCAGGCAGTATGGATGATAGCTTCCCCCAACAGCCTCGTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCTTCAGGCAGTATGGATGATAGCTTCCCCCAACAGCCTCGTAGA  250

seq1  TGCAGCCCCCTTCCATTAGCCTCCTCTGCTTATTTACTCTCTCATGTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCCCCTTCCATTAGCCTCCTCTGCTTATTTACTCTCTCATGTCCC  300

seq1  AAGACCACATGCAACTAAGGACAAAGTTGGATACAAATGGCTGGGGGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCACATGCAACTAAGGACAAAGTTGGATACAAATGGCTGGGGGGGA  350

seq1  AGGCAGGCTAAACTCTCGGGTGAGGGTCCAATGACCTCCCCCTAACCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGCTAAACTCTCGGGTGAGGGTCCAATGACCTCCCCCTAACCCCT  400

seq1  CATTCTATCAGAGAACATCAATAGTCAGCCAGGCTACTCTGAATGACCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTATCAGAGAACATCAATAGTCAGCCAGGCTACTCTGAATGACCTC  450

seq1  TTGAAAATTAGCACAGTTAATCTGATGGCGATGACATTTTACAACAGCCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATTAGCACAGTTAATCTGATGGCGATGACATTTTACAACAGCCG  500

seq1  CATTCCTCTTCTGTGGGGGCAGAAGAAGAGGTAGGCGTCAAGTGTGGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTCTTCTGTGGGGGCAGAAGAAGAGGTAGGCGTCAAGTGTGGGGT  550

seq1  AGCTGTTTCCTCTGAATTGAAATTTTTACTTGTTAAGGGAGAATGGAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTTCCTCTGAATTGAAATTTTTACTTGTTAAGGGAGAATGGAGGG  600

seq1  CTCATAAGATTGAAAAACAGCAAAGGAAACTCACAAGGCTCAGGAAGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAAGATTGAAAAACAGCAAAGGAAACTCACAAGGCTCAGGAAGCTC  650

seq1  AGAAAGTTACAAGACTCACAGCCGGGCGTGGTGGCGCACGCCTTTAATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTTACAAGACTCACAGCCGGGCGTGGTGGCGCACGCCTTTAATCC  700

seq1  CAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCT  750

seq1  GGTCTACAAAGTGAGCTCCAGGACAGCCAGGGCTATACAGAGAAACCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTACAAAGTGAGCTCCAGGACAGCCAGGGCTATACAGAGAAACCCTG  800

seq1  TCTCAAAAAACAAAAACAAAAACAAAAAAAAAAAAAAAAAAAAACAAAAA  850
      ||||  |||||||||   |||||||||||||||||||||||     ||||
seq2  TCTC--AAAACAAAA--CAAAACAAAAAAAAAAAAAAAAAA----CAAAA  842

seq1  AAAAGACTCACAAGGCCCCTCCCCAAGGTTAGATAAACAGTTACAGTTGC  900
      |||||||||||||||||||| ||||||||||||| |||||||||||||||
seq2  AAAAGACTCACAAGGCCCCT-CCCAAGGTTAGAT-AACAGTTACAGTTGC  890

seq1  TGAGATGAGGAGACTCTCTGAGCACCCACTGCCTACAAGTCCTTCAGGGA  950
      ||||||||||||||| |||||||||||||||||||| |||||||||||||
seq2  TGAGATGAGGAGACTTTCTGAGCACCCACTGCCTAC-AGTCCTTCAGGGA  939

seq1  GCTTGATGGATACAACTTTGGT-GAGTGGTCACCCATGTTCCTATAATGA  999
      |||||||||||||||||||||| | |||||||||||||||||||||||||
seq2  GCTTGATGGATACAACTTTGGTGGGGTGGTCACCCATGTTCCTATAATGA  989

seq1  ACCCCAATAAACT-CATCAGTTTATCAAACTGAAGA-GAGAATTGTTTCT  1047
      ||||| ||||||| | |||||||||| ||||| ||| |||| |  ||| |
seq2  ACCCC-ATAAACTCCTTCAGTTTATC-AACTGGAGAGGAGATTGTTTTTT  1037

seq1  CTGGTC-TGTTGTCATTGCCCTATAGATGATTG-TTTGTG-TCTCTGTAG  1094
       ||||| ||| ||||||| |||  ||||||||| |||||| ||| | |||
seq2  TTGGTCTTGTGGTCATTGGCCTTAAGATGATTGTTTTGTGTTCTTTTTAG  1087

seq1  GAAAAGCCACACAACACTAGAAAATGAACCTCAGCCCCACAGAGAGGGAA  1144
      |||||||  ||||||  ||| |||||||||||||| || |||||||||||
seq2  GAAAAGC--CACAACCTTAG-AAATGAACCTCAGCTCC-CAGAGAGGGAA  1133

seq1  CAGCAGCATCAAGAAGTGTCAGCACAGGCT-GGAGAGA  1181
      |||| ||||  || |||||||||||||||| |||||||
seq2  CAGC-GCATTTAG-AGTGTCAGCACAGGCTGGGAGAGA  1169

seq1: chr10_77611577_77612719
seq2: B6Ng01-072H11.g_66_1197 (reverse)

seq1  TGAGAGAATCCCATGGCCACCTGGGAACGTGTCAGTGGTGGCTCAGGGCA  50
      |||||||||||||| |||||   | |||||||||||||||||||| ||||
seq2  TGAGAGAATCCCAT-GCCAC--TGAAACGTGTCAGTGGTGGCTCA-GGCA  46

seq1  TGGTGTCCTTAGGAAGTACCAAGCTTTCCTGAATATACCCATATCTCTAG  100
      ||  || |||| |||||||||||| ||||||||||||||||| |||||||
seq2  TG--GTTCTTA-GAAGTACCAAGCCTTCCTGAATATACCCATCTCTCTAG  93

seq1  CTTCCTATTTGCCTCATGTGAATATCTCAGAAGAGCAAACCGGAGCAGGC  150
      | |||||||||||||||||| || | |||||||||| ||||| |||| ||
seq2  CCTCCTATTTGCCTCATGTG-ATTTTTCAGAAGAGC-AACCGAAGCA-GC  140

seq1  AAGCCACACCCAATGTGTATAGAGCTGGGCAGGAGGCCTGGGCACCCTGC  200
      ||||| |||||||||||||||||||||||||||||||||||||| |||||
seq2  AAGCCCCACCCAATGTGTATAGAGCTGGGCAGGAGGCCTGGGCA-CCTGC  189

seq1  TTAGTAGGGGTGCAATAAATGCTATGGTCCCACTGTGTGCTCTTTTACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAGGGGTGCAATAAATGCTATGGTCCCACTGTGTGCTCTTTTACTA  239

seq1  CAGTAGCACAGCAAATTAACTCAGAGCCTTAATGCAGACAAATCCAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGCACAGCAAATTAACTCAGAGCCTTAATGCAGACAAATCCAGTTT  289

seq1  CTCATGTCATTTTCGGTTCAAACAGGTTCCATGGTATCTCCCAGGTACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTCATTTTCGGTTCAAACAGGTTCCATGGTATCTCCCAGGTACTG  339

seq1  TCTGGAATCCTGGGGCACTCACAGAGGCCAGGACATAGACTTTCTGTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAATCCTGGGGCACTCACAGAGGCCAGGACATAGACTTTCTGTGAC  389

seq1  AGACCTCTGGAACTTCCTGTTTGGGGCCATGTCAGAAACACCAAAAGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTCTGGAACTTCCTGTTTGGGGCCATGTCAGAAACACCAAAAGATG  439

seq1  CTTAATGTGAAATATTTTAGAACTTCTGCTATTCGGCTCAAACCAGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATGTGAAATATTTTAGAACTTCTGCTATTCGGCTCAAACCAGGAAG  489

seq1  TTCAGGGATGCATGACACAAGACAGAAAATTCTAAAAGAACTTTTTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGATGCATGACACAAGACAGAAAATTCTAAAAGAACTTTTTTTTT  539

seq1  TTTTTTTTAAAGCACCAAAAAAGATGCCATGGTTTGAAGGCAACTCCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAAAGCACCAAAAAAGATGCCATGGTTTGAAGGCAACTCCACA  589

seq1  AATTCCTTTCTTGGTCAGGGAAGTTAGCAGAGCCTGGAGCTCAGGGCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTTTCTTGGTCAGGGAAGTTAGCAGAGCCTGGAGCTCAGGGCACA  639

seq1  CATGAGTGCACAGGTCTTAAGGAAGCCGAGAGCAGAGTTTAAAATCGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTGCACAGGTCTTAAGGAAGCCGAGAGCAGAGTTTAAAATCGAGG  689

seq1  GAGCCAATGACGTGCTGGGGGATGCTTTCCCTTCAGGAAATGCTGGCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAATGACGTGCTGGGGGATGCTTTCCCTTCAGGAAATGCTGGCCCT  739

seq1  GCCACAGAGCTAGGGCTTGGCCCGAGTCAGCTGTGGAGTGCTGTTATGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGAGCTAGGGCTTGGCCCGAGTCAGCTGTGGAGTGCTGTTATGCC  789

seq1  ATCTGGTGAATCTCAGCAATAGATCTATACAACCTAGGGGCTCCGGTGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGTGAATCTCAGCAATAGATCTATACAACCTAGGGGCTCCGGTGGC  839

seq1  TCCTGAGAAACTAAAATTAAGAACACAACCCAGCACCAAGGGCGTTCTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGAAACTAAAATTAAGAACACAACCCAGCACCAAGGGCGTTCTTA  889

seq1  GCAGCACCTGTCCTGTGAAATATCCATTGTCCTGCCCACAGATGCCAGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCACCTGTCCTGTGAAATATCCATTGTCCTGCCCACAGATGCCAGGA  939

seq1  ATAAAGGGTACCAGGCAGCAGAGGGGACCTAGCAGTTGGGACCCAGCAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGGTACCAGGCAGCAGAGGGGACCTAGCAGTTGGGACCCAGCAGA  989

seq1  TGGGACAATCCAGGTACTGGCCATAGATATAGATGGGGACCCTGCTGAGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACAATCCAGGTACTGGCCATAGATATAGATGGGGACCCTGCTGAGG  1039

seq1  TCTCTCCTGTGAACCATTATGTCTTTGATGTGCACCCCCCTCATGCCTCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCTGTGAACCATTATGTCTTTGATGTGCACCCCCCTCATGCCTCA  1089

seq1  GCTTACCCCCGTGAATGGGCTCATCTGTGCCCTCACAGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACCCCCGTGAATGGGCTCATCTGTGCCCTCACAGAATTC  1132