BAC Information

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BAC

Clone NameB6Ng01-072H17
Chromosome12 (Build37)10 (Build37)
Map Location 61,343,154 - 61,344,25393,684,031 - 93,684,170
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC665628, LOC238199, LOC665639, LOC665644, EG622488
Downstream geneLOC665665, Ppia-ps12_475.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072H17.bB6Ng01-072H17.g
ACCDH889890DH889891
length1,097947
definitionDH889890|Mus musculus domesticus DNA, BAC clone: B6Ng01-072H17, 5' end.DH889891|Mus musculus domesticus DNA, BAC clone: B6Ng01-072H17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(61,343,154 - 61,344,253)(93,684,031 - 93,684,170)
sequence
gaattccatgtttatagacatgaaaaaaagtagcagtcagttttcttcaa
ttgtgtgaactatgacaggttagccaccccaatttcatgaatggttagga
catataaattggatctaatgggtttgaaaaggggaaaaggggaaaggaaa
aagaggaagaaatctcaaatttaggaagattgtaagaaaggatagatgga
tctgggaggagttataggagtcagtgaatatgatcaaaatatattgtata
aaattctcaaaatacttatatgaatattattaaaagtaaccagcactcag
caggcagatttgtgtttgaagccagcctggtcaacagagcaagttctgga
cagctaaggctgaacagagaaaacttgtctcaaaatatcagataggtaga
tagatagatagatagatagatagatagatagatagatagatagataatgc
tttcaaaattgatttaattttattccaaagattaagtataggcataaatc
acatatatttgtttttgtggatatttttggagattattttttattcatta
atctctgtaacatagatagaatttctctttttttcattttttattagatt
tttttaaatttacatttcaaatgttgtcccctttcctggtttgtgtggat
ttttagaagtgaaaaccccctcactcacaaaagaatatttttgatgacag
acaagttaaaaatttcaaaattatatcaaattattaatcaaattatgttt
ctgctgactattagctgtgtgaccaagcatagatgctttgaagagcattg
cctcaatatgcgccaacatcattaatcccaatctcacaggattatagcta
tgataaaatgtgctgcaatgttagtgcataatatgatgaaaataattact
attataattatgctcagtattactcaactaaactatgccattctcaccta
taattggaaatttggggaaacattacttatggaaatattagagattgtta
ggaaaaaacaaagactattcctatatgtctaggatttatcatctatacga
gctagtaactatggtgggcaggtagccacttatgattattaattttg
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcaacatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctaagatcaaaaattcaggcaaaagc
agatgctggcgaggatgtggagaacgaggaacactccttcattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcttttcctca
gaaaattggacttagtagtacaggaggatcccgcaataactctcctgggc
atatatctagaagatgttccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacaaaaaatgtggtacatttgcacaatg
tagtactactcagctattaaaaataatgaatttatgaaattcctaggcaa
atggttggacctggaggtcatcatcctgagtgaggtaacccaatcacaaa
agaacaggcagggtggtggtggcatatgcctttaattccagcacttggga
ggcagaggcaggcagatttctgagttcaaggccagcctggtctacaaagt
gagttccaggacagccagggatatacagagaaaccctgtcttgaaacaaa
acaaaacaaacaacaaacaaacaaataagatttactgctttggggttata
atgagattatggaaggaaagatagatgaaaattgtttagttagatatgtt
tttgtataagaaatcataatcaataatcttgttgagatttcctctttgtc
taatgattatactgcaaagagaggcccattggacttgcaaactttatatg
ccccagtacagggggacgccagggccaaaaagggggagtggggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_61343154_61344253
seq2: B6Ng01-072H17.b_44_1140

seq1  GAATTCCATGTTTATAGACATGAAAAAAAGTAGCAGTCAGTTTTCTTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTTTATAGACATGAAAAAAAGTAGCAGTCAGTTTTCTTCAA  50

seq1  TTGTGTGAACTATGACAGGTTAGCCACCCCAATTTCATGAATGGTTAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGAACTATGACAGGTTAGCCACCCCAATTTCATGAATGGTTAGGA  100

seq1  CATATAAATTGGATCTAATGGGTTTGAAAAGGGGAAAAGGGGAAAGGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAAATTGGATCTAATGGGTTTGAAAAGGGGAAAAGGGGAAAGGAAA  150

seq1  AAGAGGAAGAAATCTCAAATTTAGGAAGATTGTAAGAAAGGATAGATGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAAGAAATCTCAAATTTAGGAAGATTGTAAGAAAGGATAGATGGA  200

seq1  TCTGGGAGGAGTTATAGGAGTCAGTGAATATGATCAAAATATATTGTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAGGAGTTATAGGAGTCAGTGAATATGATCAAAATATATTGTATA  250

seq1  AAATTCTCAAAATACTTATATGAATATTATTAAAAGTAACCAGCACTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTCAAAATACTTATATGAATATTATTAAAAGTAACCAGCACTCAG  300

seq1  CAGGCAGATTTGTGTTTGAAGCCAGCCTGGTCAACAGAGCAAGTTCTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGATTTGTGTTTGAAGCCAGCCTGGTCAACAGAGCAAGTTCTGGA  350

seq1  CAGCTAAGGCTGAACAGAGAAAACTTGTCTCAAAATATCAGATAGGTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAAGGCTGAACAGAGAAAACTTGTCTCAAAATATCAGATAGGTAGA  400

seq1  TAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAATGC  450

seq1  TTTCAAAATTGATTTAATTTTATTCCAAAGATTAAGTATAGGCATAAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAATTGATTTAATTTTATTCCAAAGATTAAGTATAGGCATAAATC  500

seq1  ACATATATTTGTTTTTGTGGATATTTTTGGAGATTATTTTTTATTCATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATTTGTTTTTGTGGATATTTTTGGAGATTATTTTTTATTCATTA  550

seq1  ATCTCTGTAACATAGATAGAATTTCTCTTTTTTTCATTTTTTATTAGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGTAACATAGATAGAATTTCTCTTTTTTTCATTTTTTATTAGATT  600

seq1  TTTTTAAATTTACATTTCAAATGTTGTCCCCTTTCCTGGTTTGTGTGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAATTTACATTTCAAATGTTGTCCCCTTTCCTGGTTTGTGTGGAT  650

seq1  TTTTAGAAGTGAAAACCCCCTCACTCACAAAAGAATATTTTTGATGACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAAGTGAAAACCCCCTCACTCACAAAAGAATATTTTTGATGACAG  700

seq1  ACAAGTTAAAAATTTCAAAATTATATCAAATTATTAATCAAATTATGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTAAAAATTTCAAAATTATATCAAATTATTAATCAAATTATGTTT  750

seq1  CTGCTGACTATTAGCTGTGTGACCAAGCATAGATGCTTTGAAGAGCATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGACTATTAGCTGTGTGACCAAGCATAGATGCTTTGAAGAGCATTG  800

seq1  CCTCAATATGCGCCAACATCATTAATCCCAATCTCACAGGATTATAGCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAATATGCGCCAACATCATTAATCCCAATCTCACAGGATTATAGCTA  850

seq1  TGATAAAATGTGCTGCAATGTTAGTGCATAATATGATGAAAATAATTACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAATGTGCTGCAATGTTAGTGCATAATATGATGAAAATAATTACT  900

seq1  ATTATAATTATGCTCAGTATTACTCAACTAAACTATGCCATTCTCACCTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAATTATGCTCAGTATTACTCAACTAAACTATGCCATTCTCACCTA  950

seq1  TAATTGGAAATTTGGGGAAACATTACTTATGGAAAATATTAAGAGATTG-  999
      |||||||||||||||||||||||||||||||| ||||||| |||||||| 
seq2  TAATTGGAAATTTGGGGAAACATTACTTATGG-AAATATT-AGAGATTGT  998

seq1  TAGGAAAAAACAAAGACTATTTCCTATATGTCTAGTATTTATCATCTATA  1049
      ||||||||||||||||||| ||||||||||||||| ||||||||||||||
seq2  TAGGAAAAAACAAAGACTA-TTCCTATATGTCTAGGATTTATCATCTATA  1047

seq1  CGAGCTAGTAAACTATGGT-GGCA-GTAGCCACTTATGATTATTTACATT  1097
      ||||||||| ||||||||| |||| |||||||||||||||||||   |||
seq2  CGAGCTAGT-AACTATGGTGGGCAGGTAGCCACTTATGATTATT--AATT  1094

seq1  TTG  1100
      |||
seq2  TTG  1097

seq1: chr10_93684031_93684170
seq2: B6Ng01-072H17.g_645_1011 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  CCCACCCCACTCCCCCTTTTTGGCCCTGGCGTCCCCCTGTACTGGGGCAT  50

seq1  --------------------------------------------------  0
                                                        
seq2  ATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTGCAGTATAATCATTAGAC  100

seq1  --------------------------------------------------  0
                                                        
seq2  AAAGAGGAAATCTCAACAAGATTATTGATTATGATTTCTTATACAAAAAC  150

seq1  --------------------------------------------------  0
                                                        
seq2  ATATCTAACTAAACAATTTTCATCTATCTTTCCTTCCATAATCTCATTAT  200

seq1  ---CCCACCCCACTCCCCCT----------TTGGTTTTTTG---------  28
         ||||   || |    ||          || ||| ||||         
seq2  AACCCCAAAGCAGTAAATCTTATTTGTTTGTTTGTTGTTTGTTTTGTTTT  250

seq1  ------AGATAGGATTTCTTTATGTGGCTCTGGATGTTTTGGAACTCACT  72
            ||| ||| ||||| | | |  | |||| |||  |||||||||||
seq2  GTTTCAAGACAGGGTTTCTCTGTATATCCCTGGCTGTCCTGGAACTCACT  300

seq1  TTGTAGACTAGGCTAGCCTTGAACTCAAAAGATCTACCTGCCTGTGCCTC  122
      |||||||| ||||| |||||||||||| || |||| ||||||| ||||||
seq2  TTGTAGACCAGGCTGGCCTTGAACTCAGAA-ATCTGCCTGCCTCTGCCTC  349

seq1  CCAAGTGCTGGTATTAAA  140
      ||||||||||| ||||||
seq2  CCAAGTGCTGGAATTAAA  367