BAC Information

Click to search

BAC

Clone NameB6Ng01-072H23
Chromosome10 (Build37)
Map Location 87,552,002 - 87,736,712
singlet/doubletdoublet
Overlap genePmch, 4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000
Upstream gene1700113H08Rik, Ascl1, Pah, LOC100041517, ENSMUSG00000058934, Igf1, Tyms-ps
Downstream gene1200002N14Rik, Gnptab, Sycp3, Chpt1, 8030451F13Rik, LOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1, Utp20, Slc5a8, Tmem16d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072H23.bB6Ng01-072H23.g
ACCDH889900DH889901
length1,1641,177
definitionDH889900|Mus musculus domesticus DNA, BAC clone: B6Ng01-072H23, 5' end.DH889901|Mus musculus domesticus DNA, BAC clone: B6Ng01-072H23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,552,002 - 87,553,160)(87,735,525 - 87,736,712)
sequence
gaattcagaaagggacccacacattcaaggaagcccgtcgtcctccagac
aatacagcagatcagccgaaagagggcgcataatggaccaggaggtttgt
agacaccagaaacataaaagcctaaatataccaccgcttgtaacattcta
aatcttttagatttaataataaatgtgaaaatgagcatatttacgttcta
aaaagaaaaaaatggaaaaatgttaataattgcagagttaggaaagaatt
cttttaaaaacaacatattagaaataatcaaacacaaaaaattcatatat
taatattaaacagactgggtcactaaaatataccacaaacaagttaaaat
aacaagccccaaaccaagcaaaatatttccaatatgtatatctaatgtcc
aaaatagtgtataaggagtgtttataatcagttatcaaaagacaatcaaa
aaccaggcctggtcttcttgctattctaaatgttaaggaggattgaaaat
ttaaggcctaggtgggttacagggtgagttcaagaccacattggaaaaga
gtattacaccatctaaaagagaaaaccgaaaggaacaaaagagctagaga
cacagctcagcagtagagcacctggctggcatgtgtaaaccctaggttca
aatctcagaacaagggaagagagcctataaaacagcaacaagcaaaaccc
aacctttttagcattgccaaggtcaaacatgtagcaatggggattcttgt
accctgttaaataaaagcataaactggtcacaactattttgaaaaacatt
tggcttttctaaagccaaacacatacgaagtctatgccctagaaattcca
cacctagaaacacagctttgtaaacacacacacacacacacacagagaga
gagagagagagagggagagagagagagagagagagagagagagagagaga
gagagagagagagagagacagagaatttgggcgtaagatgtattactcat
agaaatcttaggattaatttgaaataggcttttaaaacaccaattcctaa
gctggtggaggtgggcaagcaccatacccggtaaggcccgcacttggcag
gggggaaggaggggaggattgtcccataattaaaggccagccaaggccta
tcatagcaagaccc
gaattctctattgaaaagaagaatgaaaaccagcaaaatagtcaaatgtc
tctgttctcttttccatatgagcctctttgaggtctagcaatataaagaa
agcagctttgagataaaacaaaacaaaacaaaacaaaacactgagaaaca
atttagaaatattttgaagaagcaagcaccacaccccagagtccccaggc
tcttagtggaagacagaaaacagagcaggaattctctgtcctatcaagac
aacataaacactggcttcacattaagtcaacctcttgtccctggacactg
gctctcaactcataaaaaagactgttaaatttccagggaaataaaaatca
aattttatccatataagcctgtatatacatgcactgtactttattccaaa
tattttctcacccaggagtttggaataaaaatatctgtagttgatctgtt
ataacagcccagatatcttgaatgacttccagtcactttgcttgaaaact
ccagtgtctctgtgacattccaatgacagcctgatattactgtcaatacg
tttcattacttgtcaagacaacccttcctagcaatagattcagattgcca
tctttcggtgttctattacacttctgttatagtaccctggatggctgccc
ttgccttttctttccctcttggcacggtacttatttctaagcttatatta
aaatccgtcttatcaggttcctgcgtctgcgtgaggatggtagaagggag
agtacacgtggttcactgcagtggtagccggcttaacttcaggagagccg
tgttctctgtggattccaagtatgtcttctgtgtctctggagactccatt
agggtctatagcacgggcgcagaagagagtgaacacattctgcatgggca
caaacatctggtgtctggaatcctcaccaaccccagcaaccacctgcagc
tctactcttgttctttgatggcacaatgaagctgtgggactatcttgctg
gcattttgataaagactttcatttgttggacctaattcatgcccttttta
tcctcctcacacaagatcatcttccttacagcaaggagctcacctttggt
ctggaatacataacaaattcattgccttggaaatggagggagaatatgtc
gcctgccaatctggttattttcaggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_87552002_87553160
seq2: B6Ng01-072H23.b_48_1211

seq1  GAATTCAGAAAGGGACCCACACATTCAAGGAAGCCCGTCGTCCTCCAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAAGGGACCCACACATTCAAGGAAGCCCGTCGTCCTCCAGAC  50

seq1  AATACAGCAGATCAGCCGAAAGAGGGCGCATAATGGACCAGGAGGTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGCAGATCAGCCGAAAGAGGGCGCATAATGGACCAGGAGGTTTGT  100

seq1  AGACACCAGAAACATAAAAGCCTAAATATACCACCGCTTGTAACATTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCAGAAACATAAAAGCCTAAATATACCACCGCTTGTAACATTCTA  150

seq1  AATCTTTTAGATTTAATAATAAATGTGAAAATGAGCATATTTACGTTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTTAGATTTAATAATAAATGTGAAAATGAGCATATTTACGTTCTA  200

seq1  AAAAGAAAAAAATGGAAAAATGTTAATAATTGCAGAGTTAGGAAAGAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAAAATGGAAAAATGTTAATAATTGCAGAGTTAGGAAAGAATT  250

seq1  CTTTTAAAAACAACATATTAGAAATAATCAAACACAAAAAATTCATATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAAAACAACATATTAGAAATAATCAAACACAAAAAATTCATATAT  300

seq1  TAATATTAAACAGACTGGGTCACTAAAATATACCACAAACAAGTTAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTAAACAGACTGGGTCACTAAAATATACCACAAACAAGTTAAAAT  350

seq1  AACAAGCCCCAAACCAAGCAAAATATTTCCAATATGTATATCTAATGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGCCCCAAACCAAGCAAAATATTTCCAATATGTATATCTAATGTCC  400

seq1  AAAATAGTGTATAAGGAGTGTTTATAATCAGTTATCAAAAGACAATCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGTGTATAAGGAGTGTTTATAATCAGTTATCAAAAGACAATCAAA  450

seq1  AACCAGGCCTGGTCTTCTTGCTATTCTAAATGTTAAGGAGGATTGAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGCCTGGTCTTCTTGCTATTCTAAATGTTAAGGAGGATTGAAAAT  500

seq1  TTAAGGCCTAGGTGGGTTACAGGGTGAGTTCAAGACCACATTGGAAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGCCTAGGTGGGTTACAGGGTGAGTTCAAGACCACATTGGAAAAGA  550

seq1  GTATTACACCATCTAAAAGAGAAAACCGAAAGGAACAAAAGAGCTAGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTACACCATCTAAAAGAGAAAACCGAAAGGAACAAAAGAGCTAGAGA  600

seq1  CACAGCTCAGCAGTAGAGCACCTGGCTGGCATGTGTAAACCCTAGGTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTCAGCAGTAGAGCACCTGGCTGGCATGTGTAAACCCTAGGTTCA  650

seq1  AATCTCAGAACAAGGGAAGAGAGCCTATAAAACAGCAACAAGCAAAACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAGAACAAGGGAAGAGAGCCTATAAAACAGCAACAAGCAAAACCC  700

seq1  AACCTTTTTAGCATTGCCAAGGTCAAACATGTAGCAATGGGGATTCTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTTTAGCATTGCCAAGGTCAAACATGTAGCAATGGGGATTCTTGT  750

seq1  ACCCTGTTAAATAAAAGCATAAACTGGTCACAACTATTTTGAAAAACATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTTAAATAAAAGCATAAACTGGTCACAACTATTTTGAAAAACATT  800

seq1  TGGCTTTTCTAAAGCCAAACACATACGAAGTCTATGCCCTAGAAATTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTTCTAAAGCCAAACACATACGAAGTCTATGCCCTAGAAATTCCA  850

seq1  CACCTAGAAACACAGCTTTGTAAACACACACACACACACACACAGAGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAGAAACACAGCTTTGTAAACACACACACACACACACACAGAGAGA  900

seq1  GAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  950

seq1  GAGAGAGAGAGAGAGAGAGAGAGGAATATAGGCGTAAGAATGTATTACTC  1000
      |||||||||||||||||| ||| |||| | |||||||| |||||||||||
seq2  GAGAGAGAGAGAGAGAGACAGA-GAATTTGGGCGTAAG-ATGTATTACTC  998

seq1  ATTAGAATCTTAGAATTAATTTTGAAATATGCTTTTAAAAACACAATTTC  1050
      ||   |||||||| ||||| ||||||||| ||||||||||   ||||| |
seq2  ATAGAAATCTTAGGATTAA-TTTGAAATAGGCTTTTAAAACACCAATTCC  1047

seq1  TAAGCTGGTGATGGTGGCACAGCA-CATA-CCTGTAAGCCCAGCACTTGG  1098
      ||||||||||  |||||   |||| |||| || ||||| || ||||||||
seq2  TAAGCTGGTGGAGGTGGGCAAGCACCATACCCGGTAAGGCCCGCACTTGG  1097

seq1  CAGGGTG--AGG-TAGGAGGATTG--CCATAAATTTAAGGCCAGCC-AGG  1142
      ||||| |  |||   |||||||||  |||| |||| |||||||||| |||
seq2  CAGGGGGGAAGGAGGGGAGGATTGTCCCAT-AATTAAAGGCCAGCCAAGG  1146

seq1  GCTA-CATAGCAAGACCC  1159
       ||| |||||||||||||
seq2  CCTATCATAGCAAGACCC  1164

seq1: chr10_87735525_87736712
seq2: B6Ng01-072H23.g_70_1246 (reverse)

seq1  TGCCTGAAAAAATAAACAGATT-GCA-GCGACATATTCTCCCT-CATTTC  47
      ||||||  ||||||| |||||| ||| |||||||||||||||| ||||||
seq2  TGCCTG--AAAATAACCAGATTGGCAGGCGACATATTCTCCCTCCATTTC  48

seq1  CAAAGGCAATGAATTTTGTTTATGTAATCCAGAACAAAGGTGAGCTCCTT  97
      | ||||||||||||||   ||||||| |||||| ||||||||||||||||
seq2  C-AAGGCAATGAATTT--GTTATGTATTCCAGACCAAAGGTGAGCTCCTT  95

seq1  GGCTTGTAAGGAAGATGGGATCTTTGGTGTGAGGAGGAATAAAGAGGGCA  147
      |   ||||||||||||  ||||||  ||||||||||| ||||| ||||||
seq2  G--CTGTAAGGAAGAT--GATCTT--GTGTGAGGAGG-ATAAAAAGGGCA  138

seq1  TGGAATTTAGGTCCAAC-AATGAAAGTCTTTATCAAAATGCCAGCAAGAT  196
      ||  | ||||||||||| ||||||||||||||||||||||||||||||||
seq2  TG--AATTAGGTCCAACAAATGAAAGTCTTTATCAAAATGCCAGCAAGAT  186

seq1  AGTCCCACAGCTTCATTGTGCCATCAAAGGAACAAGAGTAGAGCTGCAGG  246
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGTCCCACAGCTTCATTGTGCCATCAAA-GAACAAGAGTAGAGCTGCAGG  235

seq1  TGGTTGCTGGGGTTGGTGAGGATTCCAGACACCAGATGTTTGTGCCCATG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGCTGGGGTTGGTGAGGATTCCAGACACCAGATGTTTGTGCCCATG  285

seq1  CAGAATGTGTTCACTCTCTTCTGCGCCCGTGCTATAGACCCTAATGGAGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGTGTTCACTCTCTTCTGCGCCCGTGCTATAGACCCTAATGGAGT  335

seq1  CTCCAGAGACACAGAAGACATACTTGGAATCCACAGAGAACACGGCTCTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAGACACAGAAGACATACTTGGAATCCACAGAGAACACGGCTCTC  385

seq1  CTGAAGTTAAGCCGGCTACCACTGCAGTGAACCACGTGTACTCTCCCTTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTTAAGCCGGCTACCACTGCAGTGAACCACGTGTACTCTCCCTTC  435

seq1  TACCATCCTCACGCAGACGCAGGAACCTGATAAGACGGATTTTAATATAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATCCTCACGCAGACGCAGGAACCTGATAAGACGGATTTTAATATAA  485

seq1  GCTTAGAAATAAGTACCGTGCCAAGAGGGAAAGAAAAGGCAAGGGCAGCC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGAAATAAGTACCGTGCCAAGAGGGAAAGAAAAGGCAAGGGCAGCC  535

seq1  ATCCAGGGTACTATAACAGAAGTGTAATAGAACACCGAAAGATGGCAATC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGGTACTATAACAGAAGTGTAATAGAACACCGAAAGATGGCAATC  585

seq1  TGAATCTATTGCTAGGAAGGGTTGTCTTGACAAGTAATGAAACGTATTGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTATTGCTAGGAAGGGTTGTCTTGACAAGTAATGAAACGTATTGA  635

seq1  CAGTAATATCAGGCTGTCATTGGAATGTCACAGAGACACTGGAGTTTTCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATATCAGGCTGTCATTGGAATGTCACAGAGACACTGGAGTTTTCA  685

seq1  AGCAAAGTGACTGGAAGTCATTCAAGATATCTGGGCTGTTATAACAGATC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGTGACTGGAAGTCATTCAAGATATCTGGGCTGTTATAACAGATC  735

seq1  AACTACAGATATTTTTATTCCAAACTCCTGGGTGAGAAAATATTTGGAAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACAGATATTTTTATTCCAAACTCCTGGGTGAGAAAATATTTGGAAT  785

seq1  AAAGTACAGTGCATGTATATACAGGCTTATATGGATAAAATTTGATTTTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACAGTGCATGTATATACAGGCTTATATGGATAAAATTTGATTTTT  835

seq1  ATTTCCCTGGAAATTTAACAGTCTTTTTTATGAGTTGAGAGCCAGTGTCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCTGGAAATTTAACAGTCTTTTTTATGAGTTGAGAGCCAGTGTCC  885

seq1  AGGGACAAGAGGTTGACTTAATGTGAAGCCAGTGTTTATGTTGTCTTGAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACAAGAGGTTGACTTAATGTGAAGCCAGTGTTTATGTTGTCTTGAT  935

seq1  AGGACAGAGAATTCCTGCTCTGTTTTCTGTCTTCCACTAAGAGCCTGGGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGAGAATTCCTGCTCTGTTTTCTGTCTTCCACTAAGAGCCTGGGG  985

seq1  ACTCTGGGGTGTGGTGCTTGCTTCTTCAAAATATTTCTAAATTGTTTCTC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGGGTGTGGTGCTTGCTTCTTCAAAATATTTCTAAATTGTTTCTC  1035

seq1  AGTGTTTTGTTTTGTTTTGTTTTGTTTTATCTCAAAGCTGCTTTCTTTAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTTGTTTTGTTTTGTTTTGTTTTATCTCAAAGCTGCTTTCTTTAT  1085

seq1  ATTGCTAGACCTCAAAGAGGCTCATATGGAAAAGAGAACAGAGACATTTG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTAGACCTCAAAGAGGCTCATATGGAAAAGAGAACAGAGACATTTG  1135

seq1  ACTATTTTGCTGGTTTTCATTCTTCTTTTCAATAGAGAATTC  1188
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTTGCTGGTTTTCATTCTTCTTTTCAATAGAGAATTC  1177