BAC Information

Click to search

BAC

Clone NameB6Ng01-074J09
Chromosome3 (Build37)10 (Build37)
Map Location 155,146,136 - 155,147,398104,053,966 - 104,054,363
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040810, LOC100040829, Tyw3, Cryz, BC007180, Tnni3k, Fpgt, Lrrc44, EG383956
Downstream geneScp2-ps1, EG668902, LOC624519, LOC100040901
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074J09.bB6Ng01-074J09.g
ACCDH891390DH891391
length1,263978
definitionDH891390|Mus musculus domesticus DNA, BAC clone: B6Ng01-074J09, 5' end.DH891391|Mus musculus domesticus DNA, BAC clone: B6Ng01-074J09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(155,146,136 - 155,147,398)(104,053,966 - 104,054,363)
sequence
gaattcactaacttacagccacaaagagcacacattataaaatgaatcag
taggttaaaaaaatcaccccaacatatttactttatattttttgtgcttc
ttgaatgtaaatcctccctttactccagtgttatttttcattgtgacttt
tgttctttctatatagttgctgtgtcctcatttagtagtgtgtctgtgct
cacaatacctttataaaattattgtcttggggttgagcccagcgtgataa
atgtgagcaagctttctgtagcctctttactcctcatggagtattgtaaa
tataaagcttgcctctcttgcttaaaatccatcactggctcatctttcat
agttaagatccatgttccctttcacatactagaaacatctttccccctcc
atccacctcttgtcatccactttgtctttatacaaatttctgtcttcatg
gttgctgttctcagcagagcaaactggtttaggaaagatgattataacat
cctcttctttcttcgtaccaacttacccttcatatatgtgttagaagtgg
ccatcacaaatgtggcccctagtgtctggagatgctcaagttgcatattc
aataacagtatagggatatgcagaaggatagatggtttctgttacctttt
gccgtgtccaaataatatcattttctttataaaataaaaaaaccccagct
atttattaagggaacagctcatgagcagatcagagggtctgaatggaaaa
ctctggcagtcaatataagatagaagggtgtaggccctctcacagacctc
tggttcttcacagtaaatcttatatgaaaaagatatttctacgttattgc
aaacctcattttcctctcttatgaagatgaaatatatgtggtatccaatt
caaattttataaatatcacttaatataattggtatccaaagctttgttct
actccaaagtattagaaatacagatgtagaaatatcctccacaaaactat
ttgttaattcaaagttttcagtacttactgttatgaaaaggaggtttacc
tatatttctgagccatgttttttgtcagaataccattggtggagataagg
ttccactggggttattaagaaagcactcaaccttgcttaccattgttggg
ataggcatttacgcacagggacttgactccatcccacctaaggcatgttc
ttgaaatataccttcagctgccacctacaaatctgttgccttctaatagg
tccgacctcttca
gaattctcacctgaggaatactgaacagctgagaagcacctaaaaagtgt
tcaacacccttaatcatcagggaaatgcaaatcaaagcaaccctgagatt
ccacctcacaccaggcagaatggctaagatcaaaacctcaggtgacagca
gatgctggcgaggatatggagaaagaagaacactcctccattgctggtgg
gattgcaagctggtacaaccactctggaaatcagtttggtggttcctcag
aaaattggacatagtactaccgaagggtccagcaatacctctcctgggca
tatacccagatgttccaactggtaataaggacacatgctccaatctatgt
tcatagcagccttatttataatagccagaagctggaaataacccaggtgt
ccctttctaggctttttgttggttattttatttatttacatttcaaatgt
tattctcctttccaattttccctctataggtcccctgttccctcctccct
ccttttgcctttatgagtatcctcccccatcttcctgctcactcctgcct
cagaggcctagaattccactatcctgggtcatcaagcctccacaggacca
agggggctcccctcccagtgatgccagataaggcaatcctctgctatata
ccagctggagctatgtacccactgtgtactctttggttggtggcttagac
cttaggaactctgggggtcttgttggttgatattgttgttcttcctatgg
ggttgcaaaccccttcggctcctacagtccttgccctaacttcccccatg
ggggtccccacactcagttcaatgcttggctgtgtacatccacgtctata
ttggtctagctctggcttacaagtccttctcacttctccctcagtggagt
ccattgagctttaggcttagagattgtgttgtgaatttttcaattggagt
tgtcatttgtcctcagtatgttgaccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_155146136_155147398
seq2: B6Ng01-074J09.b_44_1306

seq1  GAATTCACTAACTTACAGCCACAAAGAGCACACATTATAAAATGAATCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAACTTACAGCCACAAAGAGCACACATTATAAAATGAATCAG  50

seq1  TAGGTTAAAAAAATCACCCCAACATATTTACTTTATATTTTTTGTGCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTAAAAAAATCACCCCAACATATTTACTTTATATTTTTTGTGCTTC  100

seq1  TTGAATGTAAATCCTCCCTTTACTCCAGTGTTATTTTTCATTGTGACTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGTAAATCCTCCCTTTACTCCAGTGTTATTTTTCATTGTGACTTT  150

seq1  TGTTCTTTCTATATAGTTGCTGTGTCCTCATTTAGTAGTGTGTCTGTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTTCTATATAGTTGCTGTGTCCTCATTTAGTAGTGTGTCTGTGCT  200

seq1  CACAATACCTTTATAAAATTATTGTCTTGGGGTTGAGCCCAGCGTGATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATACCTTTATAAAATTATTGTCTTGGGGTTGAGCCCAGCGTGATAA  250

seq1  ATGTGAGCAAGCTTTCTGTAGCCTCTTTACTCCTCATGGAGTATTGTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGCAAGCTTTCTGTAGCCTCTTTACTCCTCATGGAGTATTGTAAA  300

seq1  TATAAAGCTTGCCTCTCTTGCTTAAAATCCATCACTGGCTCATCTTTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGCTTGCCTCTCTTGCTTAAAATCCATCACTGGCTCATCTTTCAT  350

seq1  AGTTAAGATCCATGTTCCCTTTCACATACTAGAAACATCTTTCCCCCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAGATCCATGTTCCCTTTCACATACTAGAAACATCTTTCCCCCTCC  400

seq1  ATCCACCTCTTGTCATCCACTTTGTCTTTATACAAATTTCTGTCTTCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACCTCTTGTCATCCACTTTGTCTTTATACAAATTTCTGTCTTCATG  450

seq1  GTTGCTGTTCTCAGCAGAGCAAACTGGTTTAGGAAAGATGATTATAACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGTTCTCAGCAGAGCAAACTGGTTTAGGAAAGATGATTATAACAT  500

seq1  CCTCTTCTTTCTTCGTACCAACTTACCCTTCATATATGTGTTAGAAGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCTTTCTTCGTACCAACTTACCCTTCATATATGTGTTAGAAGTGG  550

seq1  CCATCACAAATGTGGCCCCTAGTGTCTGGAGATGCTCAAGTTGCATATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCACAAATGTGGCCCCTAGTGTCTGGAGATGCTCAAGTTGCATATTC  600

seq1  AATAACAGTATAGGGATATGCAGAAGGATAGATGGTTTCTGTTACCTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAGTATAGGGATATGCAGAAGGATAGATGGTTTCTGTTACCTTTT  650

seq1  GCCGTGTCCAAATAATATCATTTTCTTTATAAAATAAAAAAACCCCAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTGTCCAAATAATATCATTTTCTTTATAAAATAAAAAAACCCCAGCT  700

seq1  ATTTATTAAGGGAACAGCTCATGAGCAGATCAGAGGGTCTGAATGGAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTAAGGGAACAGCTCATGAGCAGATCAGAGGGTCTGAATGGAAAA  750

seq1  CTCTGGCAGTCAATATAAGATAGAAGGGTGTAGGCCCTCTCACAGACCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCAGTCAATATAAGATAGAAGGGTGTAGGCCCTCTCACAGACCTC  800

seq1  TGGTTCTTCACAGTAAATCTTATATGAAAAAGATATTTCTACGTTATTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTTCACAGTAAATCTTATATGAAAAAGATATTTCTACGTTATTGC  850

seq1  AAACCTCATTTTCCTCTCTTATGAAGATGAAATATATGTGGTATCCAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCATTTTCCTCTCTTATGAAGATGAAATATATGTGGTATCCAATT  900

seq1  CAAATTTTATAAATATCACTTAATATAATTGGTATCCAAAAGCTTTGTTC  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAAATTTTATAAATATCACTTAATATAATTGGTATCC-AAAGCTTTGTTC  949

seq1  TAACTCCAAAGTATTAGAAATACAAGATGTAAGAAATATCCTCCACAAAA  1000
      | ||||||||||||||||||||| |||||| |||||||||||||||||||
seq2  T-ACTCCAAAGTATTAGAAATAC-AGATGT-AGAAATATCCTCCACAAAA  996

seq1  CTATTTGTTAATTCAAAAGTTTTTCAGTACTTAACTGTTATGAAAAGGAA  1050
      |||||||||||||||||   |||||||||||| |||||||||||||||| 
seq2  CTATTTGTTAATTCAAA--GTTTTCAGTACTT-ACTGTTATGAAAAGGAG  1043

seq1  GTTTACCTATA-TTCTGAGCCATGGTTTTGTGTCCAGAATACCATTGGT-  1098
      ||||||||||| ||||||||||| ||||| ||| ||||||||||||||| 
seq2  GTTTACCTATATTTCTGAGCCAT-GTTTTTTGT-CAGAATACCATTGGTG  1091

seq1  GAGATATAGTTTCCACTGGGTATATTA--GAAGCACTCACCCTTGC-TAC  1145
      |||||| || ||||||||||  |||||   ||||||||| |||||| |||
seq2  GAGATA-AGGTTCCACTGGGGTTATTAAGAAAGCACTCAACCTTGCTTAC  1140

seq1  CATTGT--GGATA-GCATACA-GCA---GGACTTGACTCCAT-CCAGCTA  1187
      ||||||  ||||| ||||  | |||   |||||||||||||| ||| |||
seq2  CATTGTTGGGATAGGCATTTACGCACAGGGACTTGACTCCATCCCACCTA  1190

seq1  GGGCATGTTCATGAAAATATACC-TCAGCTGCCCACCTACACAAATCTGT  1236
       ||||||||| || ||||||||| ||||||| ||||||  ||||||||||
seq2  AGGCATGTTCTTG-AAATATACCTTCAGCTG-CCACCT--ACAAATCTGT  1236

seq1  TGCCTTCATATAGTCCAAACCTCTTCA  1263
      |||||||  ||||  |  |||||||||
seq2  TGCCTTCTAATAGGTCCGACCTCTTCA  1263

seq1: chr10_104053966_104054363
seq2: B6Ng01-074J09.g_68_463 (reverse)

seq1  CTGGGTTCTTTCCAGCTCCTGGCTATTATAAATAAGGCTGCTATGAATAT  50
      ||||||| ||||||||| ||||||||||||||||||||||||||||| ||
seq2  CTGGGTTATTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAACAT  50

seq1  AG--TGGAGCATGTGTCCTTCTTACCGGTTGGGGCATCTTCTGGATATAT  98
      ||  |||||||||||||||| ||||| |||||   | | ||||| |||||
seq2  AGATTGGAGCATGTGTCCTTATTACCAGTTGG---AACATCTGGGTATAT  97

seq1  GCCCAGAAGAGGTATTGCTGGATCCTCCGGTAGTACTATGTCCAATTTTC  148
      |||||| ||||||||||||||| ||| |||||||||||||||||||||||
seq2  GCCCAGGAGAGGTATTGCTGGACCCTTCGGTAGTACTATGTCCAATTTTC  147

seq1  TGACGAACCGCCAGACGGATTTCCAGAGTGGTTGTACAAGCCTGCAATCC  198
      ||| ||||| ||| || |||||||||||||||||||| ||| ||||||||
seq2  TGAGGAACCACCAAACTGATTTCCAGAGTGGTTGTACCAGCTTGCAATCC  197

seq1  CACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCATCT  248
      ||||| |||||||||||||||| |||||||||| ||||||||||||||||
seq2  CACCAGCAATGGAGGAGTGTTCTTCTTTCTCCATATCCTCGCCAGCATCT  247

seq1  GCTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGA  298
      ||||||||||||  |||||||||||||||||||| |||||||||||||||
seq2  GCTGTCACCTGAGGTTTTGATCTTAGCCATTCTGCCTGGTGTGAGGTGGA  297

seq1  ATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAA  348
      |||||||||||| ||||||||||||||||||||||||||||| |||||||
seq2  ATCTCAGGGTTGCTTTGATTTGCATTTCCCTGATGATTAAGGGTGTTGAA  347

seq1  CATTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCCTCAGGTGAGAATTC  398
      || ||||| ||||||||||| ||  ||| |||||||||||||||||||||
seq2  CACTTTTT-AGGTGCTTCTCAGCTGTTCAGTATTCCTCAGGTGAGAATTC  396