BAC Information

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BAC

Clone NameB6Ng01-075C18
Chromosome14 (Build37)10 (Build37)
Map Location 83,864,235 - 83,865,424104,054,026 - 104,054,363
singlet/doubletsingletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100043773, LOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285, Pcdh17, 9630013A20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075C18.bB6Ng01-075C18.g
ACCDH891804DH891805
length1,184886
definitionDH891804|Mus musculus domesticus DNA, BAC clone: B6Ng01-075C18, 5' end.DH891805|Mus musculus domesticus DNA, BAC clone: B6Ng01-075C18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(83,864,235 - 83,865,424)(104,054,026 - 104,054,363)
sequence
gaattcactcaagaagatgagttaatatatggtgatactctggtattttt
aaggatatgcaccagtttaaaaaatgtaagaaatcccaagtagaaccata
cataatatttcattaatagtagcattttaaaaagtaaattacagttttaa
aataataaaactagaaaaaaatattaaggttaaaggtttaaaaatcttcc
catgaaacaaatcttatccatatttttataatagacctgtaaattcacct
acatacagaaaatcaatatttacatgtttacctatatataaatcatctat
acatccaaagttattttattaattattttacctgacatatgttatataat
acaattgaagttagtggtatccgtgttgacaggatttgaaaagtcacctg
caaaagcaacagaactgaagaaagtcatagaagttagagactctagatat
atcaatttataagaagccctcaggcagactaggatcaaagtgacatagac
agaagagctcaaacttgaaattctccaggcagctgggtttctttctcttt
catgcttcaacagaagatgcactacctcatgttatataatactcattgca
atctcacatggaacactgtaacaattgtgccaagatgtcaaaatgtatgc
aaacttatactttaagtgggaagattactatattatagaaatctaatcac
ttgggagtcatacacattagttcaatatttgtactttggagaataaagta
atactgaccaacttcagattctcaattgtaacaccaatagtcaaacaatt
gcttgggtttgcaatctacccgcattcatttttgcatgtataatgatgac
ttccatcttaaagagtgtgtttaaatttacacttcaataatttgtatttt
ttactagaaaccaaactaagttttcatgtatccttcttcatgtcactgct
aatatcttagcaaattgttgtgattctgattaggtaattcttagtgccat
gccaataagaatttgatttttcacaacagagtaatagaattttaacaaag
ggataaactactctatgattttgatgaaatagcagctcattttaccatta
aaaaaaataacatttcttagaacacaggattctcctcctcatcatttaat
agaatagttcccagaaataactgaaagaattaga
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactttaaggacacttttaatcccagcgct
gggaaggcagaggcaggtagatttgtgagttctaggcgagcctggtctac
agagttccaggacagccaggactacacagaaaaaccctgtctcaaaaaac
caaaaagaaaaaaaaaaaaaagaaggaaaaagatggaatggaagaagaca
atgatatttcttcttaccaccaatccacccttacactgaaggtccttcct
agtacaataagagaagaaaacactatatgtgctaattcaagaaagaaata
tctttttcttttgtttatagatgatatgcttctctatgcagaaaatttga
agaagactgggcagaattatgaaactaataagtcaatgttcaaaagttat
gaggtacaaagtcaaaactggcaaagcagattttcttttctatattgaat
caaaaccaaaacattatatataataacatccaccaaattaaaatgcatag
ggtgtaaatttttacaattttacacaaaaacatgaattaatttttatttt
tttgtttagttaaggtttattcctgtagtggagaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_83864235_83865424
seq2: B6Ng01-075C18.b_44_1227

seq1  GAATTCACTCAAGAAGATGAGTTAATATATGGTGATACTCTGGTATTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCAAGAAGATGAGTTAATATATGGTGATACTCTGGTATTTTT  50

seq1  AAGGATATGCACCAGTTTAAAAAATGTAAGAAATCCCAAGTAGAACCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATATGCACCAGTTTAAAAAATGTAAGAAATCCCAAGTAGAACCATA  100

seq1  CATAATATTTCATTAATAGTAGCATTTTAAAAAGTAAATTACAGTTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATATTTCATTAATAGTAGCATTTTAAAAAGTAAATTACAGTTTTAA  150

seq1  AATAATAAAACTAGAAAAAAATATTAAGGTTAAAGGTTTAAAAATCTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAAAACTAGAAAAAAATATTAAGGTTAAAGGTTTAAAAATCTTCC  200

seq1  CATGAAACAAATCTTATCCATATTTTTATAATAGACCTGTAAATTCACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAACAAATCTTATCCATATTTTTATAATAGACCTGTAAATTCACCT  250

seq1  ACATACAGAAAATCAATATTTACATGTTTACCTATATATAAATCATCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACAGAAAATCAATATTTACATGTTTACCTATATATAAATCATCTAT  300

seq1  ACATCCAAAGTTATTTTATTAATTATTTTACCTGACATATGTTATATAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCAAAGTTATTTTATTAATTATTTTACCTGACATATGTTATATAAT  350

seq1  ACAATTGAAGTTAGTGGTATCCGTGTTGACAGGATTTGAAAAGTCACCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTGAAGTTAGTGGTATCCGTGTTGACAGGATTTGAAAAGTCACCTG  400

seq1  CAAAAGCAACAGAACTGAAGAAAGTCATAGAAGTTAGAGACTCTAGATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCAACAGAACTGAAGAAAGTCATAGAAGTTAGAGACTCTAGATAT  450

seq1  ATCAATTTATAAGAAGCCCTCAGGCAGACTAGGATCAAAGTGACATAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTTATAAGAAGCCCTCAGGCAGACTAGGATCAAAGTGACATAGAC  500

seq1  AGAAGAGCTCAAACTTGAAATTCTCCAGGCAGCTGGGTTTCTTTCTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGCTCAAACTTGAAATTCTCCAGGCAGCTGGGTTTCTTTCTCTTT  550

seq1  CATGCTTCAACAGAAGATGCACTACCTCATGTTATATAATACTCATTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTCAACAGAAGATGCACTACCTCATGTTATATAATACTCATTGCA  600

seq1  ATCTCACATGGAACACTGTAACAATTGTGCCAAGATGTCAAAATGTATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACATGGAACACTGTAACAATTGTGCCAAGATGTCAAAATGTATGC  650

seq1  AAACTTATACTTTAAGTGGGAAGATTACTATATTATAGAAATCTAATCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTATACTTTAAGTGGGAAGATTACTATATTATAGAAATCTAATCAC  700

seq1  TTGGGAGTCATACACATTAGTTCAATATTTGTACTTTGGAGAATAAAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGTCATACACATTAGTTCAATATTTGTACTTTGGAGAATAAAGTA  750

seq1  ATACTGACCAACTTCAGATTCTCAATTGTAACACCAATAGTCAAACAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGACCAACTTCAGATTCTCAATTGTAACACCAATAGTCAAACAATT  800

seq1  GCTTGGGTTTGCAATCTACCCGCATTCATTTTTGCATGTATAATGATGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGTTTGCAATCTACCCGCATTCATTTTTGCATGTATAATGATGAC  850

seq1  TTCCATCTTAAAGAGTGTGTTTAAATTTACACTTCAATAATTTGTATTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCTTAAAGAGTGTGTTTAAATTTACACTTCAATAATTTGTATTTT  900

seq1  TTACTAGAAACCAAACTAAGTTTTCATGTATCCTTCTTCATGTCACTGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAGAAACCAAACTAAGTTTTCATGTATCCTTCTTCATGTCACTGCT  950

seq1  AATATCTTAGCAAATTGTTGTGATTCTGATTAGGTAATTCTTAGTGCCAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTTAGCAAATTGTTGTGATTCTGATTAGGTAATTCTTAGTGCCAT  1000

seq1  GCCAATAAGAATTTGATTTTTCAACAACAGAGTAATAGAATTTTAAACAA  1050
      |||||||||||||||||||||| ||||||||||||||||||||| |||||
seq2  GCCAATAAGAATTTGATTTTTC-ACAACAGAGTAATAGAATTTT-AACAA  1048

seq1  AGGGATAAACTACTCTATGATTTTGATGAAATAGCAAGCTCATTTTACCC  1100
      ||||||||||||||||||||||||||||||||||| ||||||||||| ||
seq2  AGGGATAAACTACTCTATGATTTTGATGAAATAGC-AGCTCATTTTA-CC  1096

seq1  AATTAAAAAAATAACATTTCTTAGAACACAGGGATTCTCTCTCATCAT--  1148
      | | |||||||||||||||||||||||||| |||||||| ||| ||||  
seq2  ATTAAAAAAAATAACATTTCTTAGAACACA-GGATTCTC-CTCCTCATCA  1144

seq1  TTTAATAGAATAGTTCCCCAAGAAATAACTTGAAAG-ATTAGA  1190
      ||||||||||||||||||  ||||||||| |||||| ||||||
seq2  TTTAATAGAATAGTTCCC--AGAAATAAC-TGAAAGAATTAGA  1184

seq1: chr10_104054026_104054363
seq2: B6Ng01-075C18.g_67_400 (reverse)

seq1  GTGTCCTTCTTACCGGTTGGGGCATCTTCTGGATATATGCCCAGAAGAGG  50
      ||||||||       |||||||| |||||||||||||||||||| |||||
seq2  GTGTCCTT----AAAGTTGGGGCTTCTTCTGGATATATGCCCAGGAGAGG  46

seq1  TATTGCTGGATCCTCCGGTAGTACTATGTCCAATTTTCTGACGAACCGCC  100
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TATTGCTGGATCCTCCGGTAGTACTATGTCCAATTTTCTGAGGAACCGCC  96

seq1  AGACGGATTTCCAGAGTGGTTGTACAAGCCTGCAATCCCACCAACAATGG  150
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGATTTCCAGAGTGGTTGTACAAGCCTGCAATCCCACCAACAATGG  146

seq1  AGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTGA  196

seq1  ATTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTG  250
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATTTTTGATCTTAGCCATTCTCACTGGTGTGAGGTGGAATCTCAGGGTTG  246

seq1  TTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAACATTTTTTCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAACATTTTTTCAGG  296

seq1  TGCTTCTCTGCCATTCGGTATTCCTCAGGTGAGAATTC  338
      ||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTCTGCCATTCGGTATTCCTCAGGTGAGAATTC  334