BAC Information

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BAC

Clone NameB6Ng01-075E18
Chromosome10 (Build37)
Map Location 18,213,328 - 18,358,165
singlet/doubletdoublet
Overlap geneNhsl1, Hebp2, EG627729, D10Bwg1379e
Upstream geneCited2, Txlnb, LOC665321, Heca, 3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646
Downstream geneEG237300, Perp, Tnfaip3, Tpi-rs5, EG637620, Olig3, Ifngr1, Il22ra2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075E18.bB6Ng01-075E18.g
ACCDH891893DH891894
length7141,130
definitionDH891893|Mus musculus domesticus DNA, BAC clone: B6Ng01-075E18, 5' end.DH891894|Mus musculus domesticus DNA, BAC clone: B6Ng01-075E18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,213,328 - 18,214,040)(18,357,042 - 18,358,165)
sequence
gaattccacaagagtgcccaggggaaaatggactttgggaatagctcttg
aaaacttaactgtaacagattatttgtcaaattttatgtggggtgtgtgt
gtgtgcactgtgtacgtacatatggaggccagaggagaatgccaggtatc
ttcctctaccaagggatctctgactgaacttgatgctaaacatgcatgct
tggtcagtagtgcattcatgtgtgttcagggaatagaaatgcagctctct
ctatctctctctctctctctctctctctctctctctctctctctccttct
attttgagacagacttccactgaagctggagctcacggactggctagagt
aggcgaccagcgagcactggggaccctcctgtgggcttccttagtactag
aattttaggtgtgtgcgcttttcgttgtgcgctttttatacttaacgcca
ggggtccgatctcaggttgtcaccgtcctccttgcaagtagattctgtcg
ccacttctaagttaaattcacagatggctgtcttgtttttgttttctttt
tcaagacagggtttctctgtatagccctggctgtcctggaaactcactct
gtagaccaggctggccttgaactcagaaatccgcctgcctctgcctccca
agttctgggattaaaggcgtgcactaccaccgcctgtcggctatcctgtt
ttgaccttactctt
gaattctctgagacatggtttgaagaatacgtgagcctatgctatcttca
cacgtgattttaggataaactaaacctatgctatcttcacacgtgatttt
aggatgaactaaacctatgctatcttcacacgtgattttaggatgaactg
tttcccccacatgcagatccctagtctcccagtgtttgcagaagccgatg
tgattaacattgtataagtttcagatgatgggatgccacccaagggctct
ctgagagctcagacgcagcaagagcactccggcagactgaactgtgattg
gagcatgcatgttgtactcctgtgtgtgctggctttcttggctaacctgc
gaacatccaaagggctattcaaatgaaaattctactcagtatgaagtatc
atcttatatagtattttagggagaaatacttgagaataagacagtaacaa
ttatggggttattttttccctcattaaaaaatggcttattgccacaaatt
tatttaccatagtttactcttcaacatgtacacttgaagtgtatatggtc
tgtggatgttcatatatatgtggatgcatatatgtgtgtttgtgttcatg
tatatgtatacagatacctgaggctgatatggactgtcttttttttgatc
accctataccttatatactgaagaggggcctctcactgaacccagtgctt
gctggtttggccagcttgctccagaaatccctgtctctgcctctctcatg
ctgagatgattcatagactttcatgttcacctggcttttttaagtgagtt
ctgggactcttgagctctcatcctcaaattattgcagcaagttctctcca
gcccttacatgttttttgatatattatgtcattatttcttttaattttgc
taagataaacattataccactaaaactgatattttaatcatcttccatgt
aacaatttgagcacaaattattatttattgtattgtgcaacccctcagga
catttctagagctctgctctaactagaatgagttcttctccaattccagt
taatatgctacctctgtaaacttattccatctaggcagtgcacatcagca
cattctaacataattatccattttcatctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_18213328_18214040
seq2: B6Ng01-075E18.b_46_759

seq1  GAATTCCACAAGAGTGCCCAGGGGAAAATGGACTTTGGGAATAGCTCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAAGAGTGCCCAGGGGAAAATGGACTTTGGGAATAGCTCTTG  50

seq1  AAAACTTAACTGTAACAGATTATTTGTCAAATTTTATGTGGGGTGTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTAACTGTAACAGATTATTTGTCAAATTTTATGTGGGGTGTGTGT  100

seq1  GTGTGCACTGTGTACGTACATATGGAGGCCAGAGGAGAATGCCAGGTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCACTGTGTACGTACATATGGAGGCCAGAGGAGAATGCCAGGTATC  150

seq1  TTCCTCTACCAAGGGATCTCTGACTGAACTTGATGCTAAACATGCATGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTACCAAGGGATCTCTGACTGAACTTGATGCTAAACATGCATGCT  200

seq1  TGGTCAGTAGTGCATTCATGTGTGTTCAGGGAATAGAAATGCAGCTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGTAGTGCATTCATGTGTGTTCAGGGAATAGAAATGCAGCTCTCT  250

seq1  CTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTTCT  300

seq1  ATTTTGAGACAGACTTCCACTGAAGCTGGAGCTCACGGACTGGCTAGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAGACAGACTTCCACTGAAGCTGGAGCTCACGGACTGGCTAGAGT  350

seq1  AGGCGACCAGCGAGCACTGGGGACCCTCCTGTGGGCTTCCTTAGTACTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGACCAGCGAGCACTGGGGACCCTCCTGTGGGCTTCCTTAGTACTAG  400

seq1  AATTTTAGGTGTGTGCGCTTTTCGTTGTGCGCTTTTTATACTTAACGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAGGTGTGTGCGCTTTTCGTTGTGCGCTTTTTATACTTAACGCCA  450

seq1  GGGGTCCGATCTCAGGTTGTCACCGTCCTCCTTGCAAGTAGATTCTGTCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCCGATCTCAGGTTGTCACCGTCCTCCTTGCAAGTAGATTCTGTCG  500

seq1  CCACTTCTAAGTTAAATTCACAGATGGCTGTCTTGTTTTTGTTTTCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCTAAGTTAAATTCACAGATGGCTGTCTTGTTTTTGTTTTCTTTT  550

seq1  TCAAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGG-AACTCACTCT  599
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCAAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAAACTCACTCT  600

seq1  GTAGACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCA  650

seq1  AGTTCTGGGATTAAAGGCGTGCACCACCACCGCCTGGCGGCTATCCTGTT  699
      |||||||||||||||||||||||| ||||||||||| |||||||||||||
seq2  AGTTCTGGGATTAAAGGCGTGCACTACCACCGCCTGTCGGCTATCCTGTT  700

seq1  TTGACCTTACTCTT  713
      ||||||||||||||
seq2  TTGACCTTACTCTT  714

seq1: chr10_18357042_18358165
seq2: B6Ng01-075E18.g_69_1198 (reverse)

seq1  GAGATGAAAAT-GATAAATATG-TAGAATGTGCTGATGTGCACTGCCTAG  48
      ||||||||||| ||||| |||| |||||||||||||||||||||||||||
seq2  GAGATGAAAATGGATAATTATGTTAGAATGTGCTGATGTGCACTGCCTAG  50

seq1  ATGG-ATAAGTTTACAGAGGTAGCATATTAACTGGGAATTGGAGAAGAAC  97
      |||| |||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATGGAATAAGTTTACAGAGGTAGCATATTAACT-GGAATTGGAGAAGAAC  99

seq1  TCATTTCTAGTTAGAGGCAGAGCTCTAGAAATGGTCCTGA-GGGTTGCAC  146
      ||| ||||||||||| |||||||||||||||| ||||||| |||||||||
seq2  TCA-TTCTAGTTAGA-GCAGAGCTCTAGAAAT-GTCCTGAGGGGTTGCAC  146

seq1  AATACAATAAAT-ATAATTTGTGCTC-AATTG-TACATGGAAGATGATTA  193
      |||||||||||| ||||||||||||| ||||| |||||||||||||||||
seq2  AATACAATAAATAATAATTTGTGCTCAAATTGTTACATGGAAGATGATTA  196

seq1  AAATATCAGTTTTAGTGGTAT-ATGTTTATTCTTAGCAAAATTAAAAGAA  242
      ||||||||||||||||||||| ||||||| ||||||||||||||||||||
seq2  AAATATCAGTTTTAGTGGTATAATGTTTA-TCTTAGCAAAATTAAAAGAA  245

seq1  ATAATGACATAATATATCAAAAAACATGTAAGGGCTGGAGAGAACTTGCT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGACATAATATATCAAAAAACATGTAAGGGCTGGAGAGAACTTGCT  295

seq1  GCAATAATTTGAGGATGAGAGCTC-AGAGTCCCAGAACTCACTT-AAAAA  340
      |||||||||||||||||||||||| ||||||||||||||||||| |||||
seq2  GCAATAATTTGAGGATGAGAGCTCAAGAGTCCCAGAACTCACTTAAAAAA  345

seq1  GCCAGGTGAACATGAAAGTCTATGAATCATCTCAGCATGAGAGAGGCAGA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGTGAACATGAAAGTCTATGAATCATCTCAGCATGAGAGAGGCAGA  395

seq1  GACAGGGATTTCTGGAGCAAGCTGGCCAAACCAGCAAGCACTGGGTTCAG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGATTTCTGGAGCAAGCTGGCCAAACCAGCAAGCACTGGGTTCAG  445

seq1  TGAGAGGCCCCTCTTCAGTATATAAGGTATAGGGTGATC-AAAAAAAGAC  489
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGAGAGGCCCCTCTTCAGTATATAAGGTATAGGGTGATCAAAAAAAAGAC  495

seq1  AGTCCATATCAGCCTCAGGTATCTGTATACATATACATGAACACAAACAC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCATATCAGCCTCAGGTATCTGTATACATATACATGAACACAAACAC  545

seq1  ACATATATGCATCCACATATATATGAACATCCACAGACCATATACACTTC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATGCATCCACATATATATGAACATCCACAGACCATATACACTTC  595

seq1  AAGTGTACATGTTGAAGAGTAAACTATGGTAAATAAATTTGTGGCAATAA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTACATGTTGAAGAGTAAACTATGGTAAATAAATTTGTGGCAATAA  645

seq1  GCCATTTTTTAATGAGGGAAAAAATAACCCCATAATTGTTACTGTCTTAT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTTTTAATGAGGGAAAAAATAACCCCATAATTGTTACTGTCTTAT  695

seq1  TCTCAAGTATTTCTCCCTAAAATACTATATAAGATGATACTTCATACTGA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGTATTTCTCCCTAAAATACTATATAAGATGATACTTCATACTGA  745

seq1  GTAGAATTTTCATTTGAATAGCCCTTTGGATGTTCGCAGGTTAGCCAAGA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAATTTTCATTTGAATAGCCCTTTGGATGTTCGCAGGTTAGCCAAGA  795

seq1  AAGCCAGCACACACAGGAGTACAACATGCATGCTCCAATCACAGTTCAGT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGCACACACAGGAGTACAACATGCATGCTCCAATCACAGTTCAGT  845

seq1  CTGCCGGAGTGCTCTTGCTGCGTCTGAGCTCTCAGAGAGCCCTTGGGTGG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCGGAGTGCTCTTGCTGCGTCTGAGCTCTCAGAGAGCCCTTGGGTGG  895

seq1  CATCCCATCATCTGAAACTTATACAATGTTAATCACATCGGCTTCTGCAA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCATCATCTGAAACTTATACAATGTTAATCACATCGGCTTCTGCAA  945

seq1  ACACTGGGAGACTAGGGATCTGCATGTGGGGGAAACAGTTCATCCTAAAA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGGAGACTAGGGATCTGCATGTGGGGGAAACAGTTCATCCTAAAA  995

seq1  TCACGTGTGAAGATAGCATAGGTTTAGTTCATCCTAAAATCACGTGTGAA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGTGTGAAGATAGCATAGGTTTAGTTCATCCTAAAATCACGTGTGAA  1045

seq1  GATAGCATAGGTTTAGTTTATCCTAAAATCACGTGTGAAGATAGCATAGG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCATAGGTTTAGTTTATCCTAAAATCACGTGTGAAGATAGCATAGG  1095

seq1  CTCACGTATTCTTCAAACCATGTCTCAGAGAATTC  1124
      |||||||||||||||||||||||||||||||||||
seq2  CTCACGTATTCTTCAAACCATGTCTCAGAGAATTC  1130