BAC Information

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BAC

Clone NameB6Ng01-075M03
Chromosome10 (Build37)
Map Location 117,773,400 - 117,774,587
singlet/doubletsinglet
Overlap geneEG668205
Upstream geneCpsf6, LOC668146, LOC668149, Kifc5c, Cpm, Mdm2, Slc35e3, Nup107, Rap1b, Mdm1, Il22, LOC672934, LOC668180, LOC668186, LOC668187, LOC668191, EG668193, Iltifb, LOC668198, EG668203
Downstream geneEG668209, EG668213, LOC668216, Ifng, LOC100043478, LOC100042850, Dyrk2, LOC668223, LOC100042861, LOC674417, Cand1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075M03.bB6Ng01-075M03.g
ACCDH892223DH892224
length1,1791,198
definitionDH892223|Mus musculus domesticus DNA, BAC clone: B6Ng01-075M03, 5' end.DH892224|Mus musculus domesticus DNA, BAC clone: B6Ng01-075M03, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctcctggacagaactgctcaaagggacaatgaagaggaaacaac
agatgacccccggaagcttaagcctggagagatcgatccaaacccagaga
ccaagccagcccggcccgacccgattgacatggatgaggatgaacttgag
atgctctctgaggctcgagcccgtctggccaatactcaaggaaagaaggc
taaaaggaaagcaagagaaaagcagttggaagaagccaggcgccttgctg
ccctccagaaaagacgagagcttcgagcagctggcatagagattcagaag
aaaaggaaaaggaagagaggcgttgattataatgctgaaatcccatttga
aaaaaagccagctcttggtttttatgatacttctgaggagaattaccagg
cccttgatgcagacttcaggaaattgcgacagcaggatcttgacggggag
ctaagatctgaaaaagaaggaagagatagaaaaacagacaaacagcgttt
aaaaaggaaaaaggagtctgatttaccatcagctatcctccaaaccagtg
gtgtctccgagttgactaaaaagagaagcaaacttgtgttgcctgcgcct
cagatttcagatgctgaactccaggaagttgtcaaggtaggccaggccag
tgaagtcgcacggcagacggcggaggagtcaggaataacaaactctgctt
ctagcactctcctgtctgagtacaatgtcacaaacaacagcatcgctctg
agaacaccacggacaccagcccctcaagacaggattctacaggaagctca
gaacctcatggccttgaccaatgtggacactccgttgaaaggtgggctta
ataccccactgcatgagagtgacttctctggtgtgaccccacagcggcaa
gttgtgcagactccaatacagttctgtctacccctttcaggactccttct
aatggagctgaagggctgactccccgaagtggaacaactcctaaaccagt
cactaatgccacccccaggtagacccccacttagagacagtaacataatc
cagaggatggaatggcagactacagtgacccctcttacgtgagcgaatgg
aaagagatcccgtgaccatctccgtctccggttcttagcctccctgacct
agaaccgattttgaaatcgatctgctgaa
gaattcactgccataaatcaaaccatggattccccccgcctctcagagcc
ctcccccagctgctcccatgcacgtgtgtgggtcagcacagtgccctcac
tttttgccctaagaagcagtatgcacaggagcgatggtggcagcagtggt
gacagtgcagaccctgcctgaaccagcgccctttctggccctgtggcaag
aaggcacgcagggctcctcctcaagctgctcccactccccaggtccctgc
gcctggctctgagattgctaaaggcacagtctgaggacctgcagctggga
cccggagccgacaagcccagagtcgcccagcagatggagctcctgacacc
acttctgccttttcctttgtgagctgtgagcaacccgcccacagacaggc
agtctctgcagaccctccaatattggcctttctcatcggctgatctatac
aattagaatgctgggttccctctggaccaaccagattggaactacaacac
cgctcaaggtagggagaggttggcagtttaccaccgggctctggtcacag
gtctaaagggagtggcgagatgccccaccaatttggctaaggtaaatgag
gtgatgcagggccctaccgaacccccatctgtttttctgaaaagattgat
ggaagcttatagacgctatactccttttgacccgacctctgagagccaac
aagctgcggttgctatgacttttatagggcaatcagcataagatattaaa
agaaagttacagagactagaaggattacatgccatggctttacaagattt
agttaaggaggcagaaaaggtgtatcacaagagagaaacagaggaagaag
agagagggaaaattgagaagaagagagagggagaataagagggaaagaag
acaggagaggaattcagcaggattttggtcgcagtagtagggaatgtgaa
ggaagacaggccagagatagcagacaggtacctggcaacagacccagacc
tgaagagatctgtcagagatttagagagacattgtgctatgcaagggaaa
agaatggctcggaatgcccaagaaggaagcctagtctgattctgaagatg
acaaatagtaactgtcaaccctcccgagcctaggtactgatggtggagga
cctatgactttattgacacaagggcagagacatcgtgctgtcgacatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_117773400_117774587
seq2: B6Ng01-075M03.b_49_1227 (reverse)

seq1  TTCAGGCAGAACGATTTCAAAATCGTTCTTAGGTGCAGGGAGGCCTAAGA  50
      |||| ||||| |||||||||||||| |  ||||| |||||||| ||||||
seq2  TTCA-GCAGATCGATTTCAAAATCGGTTCTAGGT-CAGGGAGG-CTAAGA  47

seq1  ACCCGAGACGGAGATGTTCACGAGATTCTCTTTCCATCTGCTTCACGTAA  100
      ||| |||||||||||| ||||| || |||||||||||  || ||||||||
seq2  ACCGGAGACGGAGATGGTCACGGGA-TCTCTTTCCATTCGC-TCACGTAA  95

seq1  GAGGGGTCACTGTAGTCTGCCATTCCATCCTCTGGATTAATGTTTAACTT  150
      |||||||||||||||||||||||||||||||||||||| |||||  || |
seq2  GAGGGGTCACTGTAGTCTGCCATTCCATCCTCTGGATT-ATGTT--AC-T  141

seq1  GTCTCTAAGTGGTGTTCTACCT-GGGGTGGCATTAGTGACTGGTTTAGGA  199
      |||||||||||| | ||||||| |||||||||||||||||||||||||||
seq2  GTCTCTAAGTGGGGGTCTACCTGGGGGTGGCATTAGTGACTGGTTTAGGA  191

seq1  GTTGTTCCACTTCGGGGAGTCAGCCCTTCAGCTCCATTAGAAGGAGTCCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTCCACTTCGGGGAGTCAGCCCTTCAGCTCCATTAGAAGGAGTCCT  241

seq1  GAAAGGGGTAGACAGAACTGTATTTGGAGTCTGCACAACTTGCCGCTGTG  299
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GAAAGGGGTAGACAGAACTGTA-TTGGAGTCTGCACAACTTGCCGCTGTG  290

seq1  GGGTCACACCAGAGAAGTCACTCTCATGCAGTGGGGTATTAAGCCCACCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCACACCAGAGAAGTCACTCTCATGCAGTGGGGTATTAAGCCCACCT  340

seq1  TTCAACGGAGTGTCCACATTGGTCAAGGCCATGAGGTTCTGAGCTTCCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACGGAGTGTCCACATTGGTCAAGGCCATGAGGTTCTGAGCTTCCTG  390

seq1  TAGAATCCTGTCTTGAGGGGCTGGTGTCCGTGGTGTTCTCAGAGCGATGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATCCTGTCTTGAGGGGCTGGTGTCCGTGGTGTTCTCAGAGCGATGC  440

seq1  TGTTGTTTGTGACATTGTACTCAGACAGGAGAGTGCTAGAAGCAGAGTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTTGTGACATTGTACTCAGACAGGAGAGTGCTAGAAGCAGAGTTT  490

seq1  GTTATTCCTGACTCCTCCGCCGTCTGCCGTGCGACTTCACTGGCCTGGCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTCCTGACTCCTCCGCCGTCTGCCGTGCGACTTCACTGGCCTGGCC  540

seq1  TACCTTGACAACTTCCTGGAGTTCAGCATCTGAAATCTGAGGCGCAGGCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTGACAACTTCCTGGAGTTCAGCATCTGAAATCTGAGGCGCAGGCA  590

seq1  ACACAAGTTTGCTTCTCTTTTTAGTCAACTCGGAGACACCACTGGTTTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGTTTGCTTCTCTTTTTAGTCAACTCGGAGACACCACTGGTTTGG  640

seq1  AGGATAGCTGATGGTAAATCAGACTCCTTTTTCCTTTTTAAACGCTGTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAGCTGATGGTAAATCAGACTCCTTTTTCCTTTTTAAACGCTGTTT  690

seq1  GTCTGTTTTTCTATCTCTTCCTTCTTTTTCAGATCTTAGCTCCCCGTCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTTTTCTATCTCTTCCTTCTTTTTCAGATCTTAGCTCCCCGTCAA  740

seq1  GATCCTGCTGTCGCAATTTCCTGAAGTCTGCATCAAGGGCCTGGTAATTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTGCTGTCGCAATTTCCTGAAGTCTGCATCAAGGGCCTGGTAATTC  790

seq1  TCCTCAGAAGTATCATAAAAACCAAGAGCTGGCTTTTTTTCAAATGGGAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGAAGTATCATAAAAACCAAGAGCTGGCTTTTTTTCAAATGGGAT  840

seq1  TTCAGCATTATAATCAACGCCTCTCTTCCTTTTCCTTTTCTTCTGAATCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCATTATAATCAACGCCTCTCTTCCTTTTCCTTTTCTTCTGAATCT  890

seq1  CTATGCCAGCTGCTCGAAGCTCTCGTCTTTTCTGGAGGGCAGCAAGGCGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCCAGCTGCTCGAAGCTCTCGTCTTTTCTGGAGGGCAGCAAGGCGC  940

seq1  CTGGCTTCTTCCAACTGCTTTTCTCTTGCTTTCCTTTTAGCCTTCTTTCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTCTTCCAACTGCTTTTCTCTTGCTTTCCTTTTAGCCTTCTTTCC  990

seq1  TTGAGTATTGGCCAGACGGGCTCGAGCCTCAGAGAGCATCTCAAGTTCAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTATTGGCCAGACGGGCTCGAGCCTCAGAGAGCATCTCAAGTTCAT  1040

seq1  CCTCATCCATGTCAATCGGGTCGGGCCGGGCTGGCTTGGTCTCTGGGTTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCCATGTCAATCGGGTCGGGCCGGGCTGGCTTGGTCTCTGGGTTT  1090

seq1  GGATCGATCTCTCCAGGCTTAAGCTTCCGGGGGTCATCTGTTGTTTCCTC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCGATCTCTCCAGGCTTAAGCTTCCGGGGGTCATCTGTTGTTTCCTC  1140

seq1  TTCATTGTCCCTTTGAGCAGTTCTGTCCAGGAGGAATTC  1188
      |||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGTCCCTTTGAGCAGTTCTGTCCAGGAGGAATTC  1179