BAC Information

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BAC

Clone NameB6Ng01-075O17
Chromosome4 (Build37)10 (Build37)
Map Location 87,454,064 - 87,455,250104,054,545 - 104,054,696
singlet/doubletsingletsinglet
Overlap geneMllt3
Upstream geneDennd4c, Rps6, Asah3l, Slc24a2
Downstream geneBC057079, Ptplad2, Ifnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075O17.bB6Ng01-075O17.g
ACCDH892341DH892342
length1,184152
definitionDH892341|Mus musculus domesticus DNA, BAC clone: B6Ng01-075O17, 5' end.DH892342|Mus musculus domesticus DNA, BAC clone: B6Ng01-075O17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(87,454,064 - 87,455,250)(104,054,545 - 104,054,696)
sequence
gaattctttctgatatatatatatacatatgaaaaagcttttgcagaact
cttcattatttttagcatatgttactacgttggaggtttttgttaagtac
tttattgtaggtttcataagtaaataaaaatatttcataacttcccagtc
tgaacccactttcagttctgggtgaaattttacttgactatgagcttcca
aaaatcaacaagatgggaaatggataacctagagtgagaccatcacacag
caggatcctccaacttcaaaagccatgggaggctttacacatagctgggc
attgcaatattttctgtactccttgtaagttaaatttggtttggcagaga
atttggggtagtcgataaggctctgtaagtaggactttacagttttagcc
aaagaaaacaggctgtagatttgatgactctatttgatttgttagtgcca
tatgcatggctttttgatcttgaaggttcagtaaatgaatgaattgatat
ggatcagaactctgtcatgtgggaaagaaatcttaatttgcctgtagtat
tgatactaacttaattatctaacacctgcatcccattgatggtaattctg
ttacgttatagttatattaaatgttaatagtatatacagacagcattaac
aagtttggggcttgcactaacactgagagtactcctatttcctagctgtg
tcattgcttctgtttataacagaatctcctactaagggaacagacaagga
tgacactagtaactgtggttaaaggaaaaacaaaaatagcgtgacaataa
ggatatcaaataataaattctctatgcaatcttcatttgttggtctagca
tagaggaattttaattgagtgtgagggctcactctacctcagaattcctc
tgtagtaattttataagtgggccaaaactaccgggcagatatttctgcca
ccacgcagttatcatccattttatctttttcttcacaagatcatatatat
ggcaaaaatgtccaactttttaaattgaaatgagggctggagagatggct
cagaggttagagcactgactgctcttccaaaggtcgttgagttcaatttc
cagcaacacaatggtggcctccccaaccatctgttatatggatctaattc
cttcttctgatgtctaagcagcttacagttactc
cacatataaccagagacagtgaaacttatagaggagaaagtgggaaaaag
cctcaaagatatgggcacaggggaaaaattcctgaatagaacagcaatgg
cttgtgctgtaagatcaagaattgacacatgggacctcataaaattgcaa
ag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_87454064_87455250
seq2: B6Ng01-075O17.b_49_1232 (reverse)

seq1  GAGTACACTGT-AGCTGCTTTTAGACATACCAGAAGAAGGCATTAGATCC  49
      ||||| ||||| ||||||  ||||||||  |||||||||| |||||||||
seq2  GAGTA-ACTGTAAGCTGC--TTAGACAT--CAGAAGAAGGAATTAGATCC  45

seq1  -TATTACAGATGGTTGTG--AGCCACCATGTGGTTGCTGGGAATTGAACT  96
       ||| ||||||||||| |   ||||||||   |||||||| |||||||||
seq2  ATATAACAGATGGTTGGGGAGGCCACCATTGTGTTGCTGGAAATTGAACT  95

seq1  C-ACGACCTTTGGAAGAGCAGTCAGTGCTCTTAACCTCTGAGCCATCTCT  145
      | |||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CAACGACCTTTGGAAGAGCAGTCAGTGCTC-TAACCTCTGAGCCATCTCT  144

seq1  CCAGCCCTCATTTCAATTTTAAAAAGTTGGACATTTTTGCCATATATATT  195
      |||||||||||||||| ||||||||||||||||||||||||||||||| |
seq2  CCAGCCCTCATTTCAA-TTTAAAAAGTTGGACATTTTTGCCATATATA-T  192

seq1  GATTCTTGTGAAGAAAAAGATAAAATGGATGATAACTGCGTGGTGGCAGA  245
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GA-TCTTGTGAAGAAAAAGATAAAATGGATGATAACTGCGTGGTGGCAGA  241

seq1  AATATCTGCCCGGTAGTTTTGG-CCACTTATAAAATTACTACAGAGGAAT  294
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AATATCTGCCCGGTAGTTTTGGCCCACTTATAAAATTACTACAGAGGAAT  291

seq1  TCTGAGGTAGAGTGAGCCCTCACACTCAATTAAAATTCCTCTATGCTAGA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGTAGAGTGAGCCCTCACACTCAATTAAAATTCCTCTATGCTAGA  341

seq1  CCAACAAATGAAGATTGCATAGAGAATTTATTATTTGATATCCTTATTGT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAAATGAAGATTGCATAGAGAATTTATTATTTGATATCCTTATTGT  391

seq1  CACGCTATTTTTGTTTTTCCTTTAACCACAGTTACTAGTGTCATCCTTGT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCTATTTTTGTTTTTCCTTTAACCACAGTTACTAGTGTCATCCTTGT  441

seq1  CTGTTCCCTTAGTAGGAGATTCTGTTATAAACAGAAGCAATGACACAGCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCCTTAGTAGGAGATTCTGTTATAAACAGAAGCAATGACACAGCT  491

seq1  AGGAAATAGGAGTACTCTCAGTGTTAGTGCAAGCCCCAAACTTGTTAATG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATAGGAGTACTCTCAGTGTTAGTGCAAGCCCCAAACTTGTTAATG  541

seq1  CTGTCTGTATATACTATTAACATTTAATATAACTATAACGTAACAGAATT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGTATATACTATTAACATTTAATATAACTATAACGTAACAGAATT  591

seq1  ACCATCAATGGGATGCAGGTGTTAGATAATTAAGTTAGTATCAATACTAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCAATGGGATGCAGGTGTTAGATAATTAAGTTAGTATCAATACTAC  641

seq1  AGGCAAATTAAGATTTCTTTCCCACATGACAGAGTTCTGATCCATATCAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAATTAAGATTTCTTTCCCACATGACAGAGTTCTGATCCATATCAA  691

seq1  TTCATTCATTTACTGAACCTTCAAGATCAAAAAGCCATGCATATGGCACT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCATTTACTGAACCTTCAAGATCAAAAAGCCATGCATATGGCACT  741

seq1  AACAAATCAAATAGAGTCATCAAATCTACAGCCTGTTTTCTTTGGCTAAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATCAAATAGAGTCATCAAATCTACAGCCTGTTTTCTTTGGCTAAA  791

seq1  ACTGTAAAGTCCTACTTACAGAGCCTTATCGACTACCCCAAATTCTCTGC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAAAGTCCTACTTACAGAGCCTTATCGACTACCCCAAATTCTCTGC  841

seq1  CAAACCAAATTTAACTTACAAGGAGTACAGAAAATATTGCAATGCCCAGC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCAAATTTAACTTACAAGGAGTACAGAAAATATTGCAATGCCCAGC  891

seq1  TATGTGTAAAGCCTCCCATGGCTTTTGAAGTTGGAGGATCCTGCTGTGTG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTAAAGCCTCCCATGGCTTTTGAAGTTGGAGGATCCTGCTGTGTG  941

seq1  ATGGTCTCACTCTAGGTTATCCATTTCCCATCTTGTTGATTTTTGGAAGC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCTCACTCTAGGTTATCCATTTCCCATCTTGTTGATTTTTGGAAGC  991

seq1  TCATAGTCAAGTAAAATTTCACCCAGAACTGAAAGTGGGTTCAGACTGGG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGTCAAGTAAAATTTCACCCAGAACTGAAAGTGGGTTCAGACTGGG  1041

seq1  AAGTTATGAAATATTTTTATTTACTTATGAAACCTACAATAAAGTACTTA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATGAAATATTTTTATTTACTTATGAAACCTACAATAAAGTACTTA  1091

seq1  ACAAAAACCTCCAACGTAGTAACATATGCTAAAAATAATGAAGAGTTCTG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAACCTCCAACGTAGTAACATATGCTAAAAATAATGAAGAGTTCTG  1141

seq1  CAAAAGCTTTTTCATATGTATATATATATATCAGAAAGAATTC  1187
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCTTTTTCATATGTATATATATATATCAGAAAGAATTC  1184

seq1: chr10_104054545_104054696
seq2: B6Ng01-075O17.g_73_224 (reverse)

seq1  CTTTGCAATTTTATGAGGTCCCATTTATCAACTCTCTATCTTACAGCACA  50
      |||||||||||||||||||||||| | |||| |||  |||||||||||||
seq2  CTTTGCAATTTTATGAGGTCCCATGTGTCAATTCTTGATCTTACAGCACA  50

seq1  AGCCATTGCTGTTCTATTCAGGAATTTTTCCCCTGTACCCATATCTTCGA  100
      |||||||||||||||||||||||||||||||||||| |||||||||| ||
seq2  AGCCATTGCTGTTCTATTCAGGAATTTTTCCCCTGTGCCCATATCTTTGA  100

seq1  GGCTTTTCCCTACTTTTTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATG  150
      ||||||| || ||||| |||||||||||||||| ||||||||||| ||||
seq2  GGCTTTTTCCCACTTTCTCCTCTATAAGTTTCACTGTCTCTGGTTATATG  150

seq1  TG  152
      ||
seq2  TG  152