BAC Information

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BAC

Clone NameB6Ng01-076A10
Chromosome10 (Build37)
Map Location 111,462,380 - 111,621,514
singlet/doubletdoublet
Overlap geneEG639527, Glipr1l1, Glipr1l2, LOC627895, Glipr1l3, Caps2
Upstream geneEG432502, LOC667904, Osbpl8, Bbs10, Nap1l1, EG382421, Phlda1, Krr1, Glipr1
Downstream geneKcnc2, LOC100042639, 4921506J03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076A10.bB6Ng01-076A10.g
ACCDH892415DH892416
length9591,162
definitionDH892415|Mus musculus domesticus DNA, BAC clone: B6Ng01-076A10, 5' end.DH892416|Mus musculus domesticus DNA, BAC clone: B6Ng01-076A10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,620,554 - 111,621,514)(111,462,380 - 111,463,555)
sequence
gaattcatttgtcacatttaatgacaggagaaagttgcttcagaaaaatg
aaaaccctcaactgagacagaccaagaactgggaagcccctttatccagg
ggcatggtgccaccacttttcttatgaatagaaagagtcatgctgcagac
agtgactttgaagaactttctggaacttacacagcagaaggaaggcctca
gggtcaatcagtaccaaacagagaaggaggtgggggcagggagaatatgc
gagtcaaatgtggatggccactaaactaaacatgcttttcctcgatgcat
gtcatgctatagtttatcactttgtagattattttatatagtttatgggg
gatttataaattatcaacaattagtttcatagtgttcaactctatacaag
tcacctggtactacagtgaccctgtaggatattcatttctaatggaaaga
tactattcgtgtcaccatttggaaaccatagcaactggcacaatggaggt
cctagtgttgacaagctgtttcactaatctctttatatcatttcgcatct
ttgaaagccaagttttctacaggtgctatgacaaacagccaatatcatgt
gaaaaccaagaacagaacagaagttaactctgaaagattctacagtgccc
aaaagacgcacacataccattaaaaagcaatctagaaatctatgaatgaa
ttttttaaaatgctgtcttctaatttatacgtgattgaaaaacgttcagc
aaactgtcaggagataattattaagtagtttaaataaaaatacttgatga
gacaataagaatttttaagtgtgtgtgtgtgtgtttttgtgtgtatgtgt
gtgtatgtgagcatgcatccatatgcacatgcctgcctacctgtaattca
ttgatcatgtgggttcatttgtatgtaacatgtgaatggaatccagaggt
cacctctgg
gaattcaaagctacttgatcaatatttgtaatttgaagtctaagcaatgc
attttcttttatggtctttggaaggctaggttgatcacagctcaaaaatg
tcaaggttgcaccctgaggaaatgaacagacaaaaaaatgttttaaagct
agaaaatatccaaaaataaaatacaactcattctgatggaagagacttgg
tttttatcatagttgccttggtatgttctaaatgtggccaaaatatagta
gattcgaagaatatttaaggactatatccaactaatactatagaaaaatg
aagtaatctccccccccccaaaagcccctagcacagtatacaacagtcat
gtgactaaaagagaatccttgtattattagataagaaccacagaagctat
ggcatgagttctgctgaatgtgtggtgatctctgtgatggtcagtttggt
caacatgacataatatgcagaaatgcctgggaaaggagtctcagtttgga
actgtctatattaggctgacctgcgagcatgagggggcgttattttcata
acattgagttggaaagatccatccactgtgggtggcatcattccctaggc
tagatcctaggatgtctaacagtggagaaagcaaggtgagacctaacatg
tgtgcagtattggttcatcattctctgctcttggctgtggatatgacatt
acatgtttcttcaagatcctgccctgccaccttgagttttctgtgatggt
gacttacaatcgggaattgccagccaaataagccttttctccctcctttt
tcatggtattttatcacagcaacagaacaacaacacaacaacaacaacac
acaacaacacagtcctgggtaagaaaacccaattagttcccggcaggcat
cgcgtctatttctagaaaacagatgatgccaatgatatttaaaatagtaa
ttttttaaaagtaagtgataaactaagatcatacttctcaagtggcaata
ctgtaaccccttaggtgtggcgtcagtaataggtgctgcgattcttgggg
aaatgtggctatggcttacagaattcttccactggacctgatttcggtat
aagaaaaggcataggctaacagtgggggacgtctccgcgctatgtccact
caggtgagctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_111620554_111621514
seq2: B6Ng01-076A10.b_47_1005 (reverse)

seq1  CCAGAGGTTGACCTCTGGATTCCATTCACATGTGTACATACAAATGAACC  50
      ||||||| ||||||||||||||||||||||||| ||||||||||||||||
seq2  CCAGAGG-TGACCTCTGGATTCCATTCACATGT-TACATACAAATGAACC  48

seq1  CACATGATC-ATGAATTTACAGGTAGGCAGGCATGTGCATATGGATGCAT  99
      ||||||||| ||||| ||||||||||||||||||||||||||||||||||
seq2  CACATGATCAATGAA-TTACAGGTAGGCAGGCATGTGCATATGGATGCAT  97

seq1  GCACACATACACACACATACACACAAAAACACACACACACACACTTAAAA  149
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACATACACACACATACACACAAAAACACACACACACACACTTAAAA  147

seq1  ATTCTTATTGTCTCATCAAGTATTTTTATTTAAACTACTTAATAATTATC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTATTGTCTCATCAAGTATTTTTATTTAAACTACTTAATAATTATC  197

seq1  TCCTGACAGTTTGCTGAACGTTTTTCAATCACGTATAAATTAGAAGACAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACAGTTTGCTGAACGTTTTTCAATCACGTATAAATTAGAAGACAG  247

seq1  CATTTTAAAAAATTCATTCATAGATTTCTAGATTGCTTTTTAATGGTATG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAAAAAATTCATTCATAGATTTCTAGATTGCTTTTTAATGGTATG  297

seq1  TGTGCGTCTTTTGGGCACTGTAGAATCTTTCAGAGTTAACTTCTGTTCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCGTCTTTTGGGCACTGTAGAATCTTTCAGAGTTAACTTCTGTTCTG  347

seq1  TTCTTGGTTTTCACATGATATTGGCTGTTTGTCATAGCACCTGTAGAAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGTTTTCACATGATATTGGCTGTTTGTCATAGCACCTGTAGAAAA  397

seq1  CTTGGCTTTCAAAGATGCGAAATGATATAAAGAGATTAGTGAAACAGCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTTTCAAAGATGCGAAATGATATAAAGAGATTAGTGAAACAGCTT  447

seq1  GTCAACACTAGGACCTCCATTGTGCCAGTTGCTATGGTTTCCAAATGGTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACACTAGGACCTCCATTGTGCCAGTTGCTATGGTTTCCAAATGGTG  497

seq1  ACACGAATAGTATCTTTCCATTAGAAATGAATATCCTACAGGGTCACTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGAATAGTATCTTTCCATTAGAAATGAATATCCTACAGGGTCACTGT  547

seq1  AGTACCAGGTGACTTGTATAGAGTTGAACACTATGAAACTAATTGTTGAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCAGGTGACTTGTATAGAGTTGAACACTATGAAACTAATTGTTGAT  597

seq1  AATTTATAAATCCCCCATAAACTATATAAAATAATCTACAAAGTGATAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATAAATCCCCCATAAACTATATAAAATAATCTACAAAGTGATAAA  647

seq1  CTATAGCATGACATGCATCGAGGAAAAGCATGTTTAGTTTAGTGGCCATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGCATGACATGCATCGAGGAAAAGCATGTTTAGTTTAGTGGCCATC  697

seq1  CACATTTGACTCGCATATTCTCCCTGCCCCCACCTCCTTCTCTGTTTGGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTGACTCGCATATTCTCCCTGCCCCCACCTCCTTCTCTGTTTGGT  747

seq1  ACTGATTGACCCTGAGGCCTTCCTTCTGCTGTGTAAGTTCCAGAAAGTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTGACCCTGAGGCCTTCCTTCTGCTGTGTAAGTTCCAGAAAGTTC  797

seq1  TTCAAAGTCACTGTCTGCAGCATGACTCTTTCTATTCATAAGAAAAGTGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGTCACTGTCTGCAGCATGACTCTTTCTATTCATAAGAAAAGTGG  847

seq1  TGGCACCATGCCCCTGGATAAAGGGGCTTCCCAGTTCTTGGTCTGTCTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACCATGCCCCTGGATAAAGGGGCTTCCCAGTTCTTGGTCTGTCTCA  897

seq1  GTTGAGGGTTTTCATTTTTCTGAAGCAACTTTCTCCTGTCATTAAATGTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGGGTTTTCATTTTTCTGAAGCAACTTTCTCCTGTCATTAAATGTG  947

seq1  ACAAATGAATTC  961
      ||||||||||||
seq2  ACAAATGAATTC  959

seq1: chr10_111462380_111463555
seq2: B6Ng01-076A10.g_69_1230

seq1  GAATTCAAAGCTACTTGATCAATATTTGTAATTTGAAGTCTAAGCAATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCTACTTGATCAATATTTGTAATTTGAAGTCTAAGCAATGC  50

seq1  ATTTTCTTTTATGGTCTTTGGAAGGCTAGGTTGATCACAGCTCAAAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTTTATGGTCTTTGGAAGGCTAGGTTGATCACAGCTCAAAAATG  100

seq1  TCAAGGTTGCACCCTGAGGAAATGAACAGACAAAAAAATGTTTTAAAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTTGCACCCTGAGGAAATGAACAGACAAAAAAATGTTTTAAAGCT  150

seq1  AGAAAATATCCAAAAATAAAATACAACTCATTCTGATGGAAGAGACTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATATCCAAAAATAAAATACAACTCATTCTGATGGAAGAGACTTGG  200

seq1  TTTTTATCATAGTTGCCTTGGTATGTTCTAAATGTGGCCAAAATATAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATCATAGTTGCCTTGGTATGTTCTAAATGTGGCCAAAATATAGTA  250

seq1  GATTCGAAGAATATTTAAGGACTATATCCAACTAATACTATAGAAAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCGAAGAATATTTAAGGACTATATCCAACTAATACTATAGAAAAATG  300

seq1  AAGTAATCTCCCCCCCCCCAAAAGCCCCTAGCACAGTATACAACAGTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATCTCCCCCCCCCCAAAAGCCCCTAGCACAGTATACAACAGTCAT  350

seq1  GTGACTAAAAGAGAATCCTTGTATTATTAGATAAGAACCACAGAAGCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTAAAAGAGAATCCTTGTATTATTAGATAAGAACCACAGAAGCTAT  400

seq1  GGCATGAGTTCTGCTGAATGTGTGGTGATCTCTGTGATGGTCAGTTTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGAGTTCTGCTGAATGTGTGGTGATCTCTGTGATGGTCAGTTTGGT  450

seq1  CAACATGACATAATATGCAGAAATGCCTGGGAAAGGAGTCTCAGTTTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGACATAATATGCAGAAATGCCTGGGAAAGGAGTCTCAGTTTGGA  500

seq1  ACTGTCTATATTAGGCTGACCTGCGAGCATGAGGGGGCGTTATTTTCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTATATTAGGCTGACCTGCGAGCATGAGGGGGCGTTATTTTCATA  550

seq1  ACATTGAGTTGGAAAGATCCATCCACTGTGGGTGGCATCATTCCCTAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGAGTTGGAAAGATCCATCCACTGTGGGTGGCATCATTCCCTAGGC  600

seq1  TAGATCCTAGGATGTCTAACAGTGGAGAAAGCAAGGTGAGACCTAACATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCCTAGGATGTCTAACAGTGGAGAAAGCAAGGTGAGACCTAACATG  650

seq1  TGTGCAGTATTGGTTCATCATTCTCTGCTCTTGGCTGTGGATATGACATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGTATTGGTTCATCATTCTCTGCTCTTGGCTGTGGATATGACATT  700

seq1  ACATGTTTCTTCAAGATCCTGCCCTGCCACCTTGAGTTTTCTGTGATGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTTCTTCAAGATCCTGCCCTGCCACCTTGAGTTTTCTGTGATGGT  750

seq1  GACTTACAATCGGGAATTGCCAGCCAAATAAGCCTTTTCTCCCTCCTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTACAATCGGGAATTGCCAGCCAAATAAGCCTTTTCTCCCTCCTTTT  800

seq1  TCATGGTATTTTATCACAGCAACAGAACAACAACAACAACAACAACAACA  850
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCATGGTATTTTATCACAGCAACAGAACAACAAC-ACAACAACAACAACA  849

seq1  ACAACAACAACAACAGTCCTGGGTAAAGAAAAACCCAATTAGTTCCCGGC  900
         |||||||| ||||||||||||||   |||||||||||||||||||||
seq2  --CACAACAAC-ACAGTCCTGGGTAA--GAAAACCCAATTAGTTCCCGGC  894

seq1  AGGCATCGCGTCTATTTCTAGAAAAACAAGATGATGCCAATGATATTTAA  950
      |||||||||||||||||||||||||   |||||||||||||||||||| |
seq2  AGGCATCGCGTCTATTTCTAGAAAA--CAGATGATGCCAATGATATTT-A  941

seq1  AAATAGTAATTTTTTTAAAAAGTAAGTGATAAACTAAGATCATACTTCTC  1000
      |||||||||||||||  |||||||||||||||||||||||||||||||||
seq2  AAATAGTAATTTTTT--AAAAGTAAGTGATAAACTAAGATCATACTTCTC  989

seq1  AAGTGGCAATACTGTAACCCCCTTAGGTGT-GCGTCAGTTAATAAGGGTT  1049
      ||||||||||||||||| |||||||||||| ||||||| |||||   | |
seq2  AAGTGGCAATACTGTAA-CCCCTTAGGTGTGGCGTCAG-TAATA---GGT  1034

seq1  GCTGCAGATTCTGGGGAAAATGT-GCTATGGCTTACAGAAATCTCCAACT  1098
      ||||| |||||| ||| |||||| |||||||||||||||| ||| | |||
seq2  GCTGC-GATTCTTGGGGAAATGTGGCTATGGCTTACAGAATTCTTCCACT  1083

seq1  GAGCTAGATTTCGATAAAGAAAAAGCCATAAGCTTAACAGTGGGGAACGT  1148
      |  |  ||||||| || |  ||||| |||| || ||||||||||| ||||
seq2  GGACCTGATTTCGGTATAAGAAAAGGCATAGGC-TAACAGTGGGGGACGT  1132

seq1  ---CCAGCTATGTCACAACTCAGGT-AGCTCA  1176
         |  |||||||  | |||||||| ||||||
seq2  CTCCGCGCTATGT--CCACTCAGGTGAGCTCA  1162