BAC Information

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BAC

Clone NameB6Ng01-077A15
Chromosome10 (Build37)
Map Location 28,974,661 - 28,975,838
singlet/doubletsinglet
Overlap genenone
Upstream genePtprk, E430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik
Downstream geneEchdc1, Rnf146, Rspo3, EG630389, Rpl12, LOC623064, LOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077A15.bB6Ng01-077A15.g
ACCDH893120DH893121
length9731,176
definitionDH893120|Mus musculus domesticus DNA, BAC clone: B6Ng01-077A15, 5' end.DH893121|Mus musculus domesticus DNA, BAC clone: B6Ng01-077A15, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttgatctctccaatgcttttaacatgaaagggtgttgtattttg
tcaagtgctttttctacatctaaggagatggtcatgtgatattttttctt
tgagtttgtttatattatatgtttatgaattttcatatattaaacaagcc
ttacacccctgggatgaagcctacttgatcgtggtgaatgatggttctga
cgtgttcttggatttggtttggaagaatattcctaattgatattcctaag
cgagattgagctgaagttctcttttttggtggggtcctagtgcagtttag
gtatcagagtgatgtggcttcatagaatgagttaggtagtgttccttctc
tttctattttttgaaatagtttgaggaaaattggtattaggtcttctttg
aagttctgataggactctgcactaaatccacctggccctgtgctattttt
ggttgggggattttaaatgacttcttctatttccttgtgcaatatgggtc
tgtttagatagtttatcagctcttgatttaactttggtatgtggtctctg
tctagaaaaccatccatttaatccagatttcccagttttgttgagtatag
gcttatagtaggatctgatgatcttttgaatttcctgtttctgttgttat
gtctccgttttcatttctgattttgttaatttggatactgtctctggacc
atttagttagttagttagtttaagggttttatctatcttattgatttctc
tcaaacaaccagcttctggttttgtttattctttgtattattttctttgt
ttctatttggttgatttcagccctgagtttaaataatttcctgacttcta
agcctctttgggtgagtttgcttctttttgttctagagtcctcagatgtg
ctgtaagttgttagtgtaagatctctccatttcttttatcagggcattag
tgcttatgaactttccctctagc

gaattctgattggagaatgacttcttagaaattattccacttttgacttc
caagataattggtttgaacaataaaaaaatatatatataaggttcggtct
tagtgatttcattactgtgaagagacactatgaccaaggcaactcttaaa
aggaacaacatttaattggggctgtcttacagattcagagattcagtccc
attatcatcaaggcaggaacatggcatcttccaggcaggcatggtgcagg
aggagctgaaagttctacatcttgctccaaaggcaaacaggagaagactg
tctcaagggcagctaagaaggagggtatcaaagcccacctcaacagtgat
gtacttcctccagcaagggcacacctcttaatagggatgctcactaggcc
aatcatattcaaaccaacacagcatttgaagctttcatgggaataccagt
agataaaagaaagaaagcccagtatggcacacagttaccttctgctgccc
atggatcaagaagtagaattctcagttccttcctcagcaccatgttgacc
tggaagatgccatggttcctaccataatgataatagattcaacctctaaa
actgcatgtcagccccaaggaactgttgtcctgtataagacttgctgtag
tcgtgatgtctcttcatataaataaagctctaattaacacacttatgtaa
acaatgcactatggtctgccttgtaggttctctccttgtttgttgtcttc
ctatatactagacaatccatcagtcaaactgcatctgaaacctagtatat
aattcttggctttacaaacaaggaataagtcaagtgtcagacacattcct
gcaatcccaccataaaggagactgaggtaggaagatcatcaatttaatcc
tatatttgaaaacagtgaagcccttaaagaaaaaagcaaatcactgcatt
taggaaagtatcataggcagattgtgaatgctcatctcagtatagaaaga
tttcatatgttagtcatcctagtttacatgtgactgaaaaatgatggtga
caactgggaactgatctatccattccttcattaactggtgcccacaccca
tttaagtgttcttgcacagaagcagcttactgggagataaggcctctctg
ccaaacttgaaatactgaaagtgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_28974661_28975838
seq2: B6Ng01-077A15.g_67_1242

seq1  GAATTCTGATTGGAGAATGACTTCTTAGAAATTATTCCACTTTTGACTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATTGGAGAATGACTTCTTAGAAATTATTCCACTTTTGACTTC  50

seq1  CAAGATAATTGGTTTGAACAATAAAAAAATATATATATAAGGTTCGGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATAATTGGTTTGAACAATAAAAAAATATATATATAAGGTTCGGTCT  100

seq1  TAGTGATTTCATTACTGTGAAGAGACACTATGACCAAGGCAACTCTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGATTTCATTACTGTGAAGAGACACTATGACCAAGGCAACTCTTAAA  150

seq1  AGGAACAACATTTAATTGGGGCTGTCTTACAGATTCAGAGATTCAGTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACAACATTTAATTGGGGCTGTCTTACAGATTCAGAGATTCAGTCCC  200

seq1  ATTATCATCAAGGCAGGAACATGGCATCTTCCAGGCAGGCATGGTGCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCATCAAGGCAGGAACATGGCATCTTCCAGGCAGGCATGGTGCAGG  250

seq1  AGGAGCTGAAAGTTCTACATCTTGCTCCAAAGGCAAACAGGAGAAGACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTGAAAGTTCTACATCTTGCTCCAAAGGCAAACAGGAGAAGACTG  300

seq1  TCTCAAGGGCAGCTAAGAAGGAGGGTATCAAAGCCCACCTCAACAGTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGGGCAGCTAAGAAGGAGGGTATCAAAGCCCACCTCAACAGTGAT  350

seq1  GTACTTCCTCCAGCAAGGGCACACCTCTTAATAGGGATGCTCACTAGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTCCTCCAGCAAGGGCACACCTCTTAATAGGGATGCTCACTAGGCC  400

seq1  AATCATATTCAAACCAACACAGCATTTGAAGCTTTCATGGGAATACCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATATTCAAACCAACACAGCATTTGAAGCTTTCATGGGAATACCAGT  450

seq1  AGATAAAAGAAAGAAAGCCCAGTATGGCACACAGTTACCTTCTGCTGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAAGAAAGAAAGCCCAGTATGGCACACAGTTACCTTCTGCTGCCC  500

seq1  ATGGATCAAGAAGTAGAATTCTCAGTTCCTTCCTCAGCACCATGTTGACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATCAAGAAGTAGAATTCTCAGTTCCTTCCTCAGCACCATGTTGACC  550

seq1  TGGAAGATGCCATGGTTCCTACCATAATGATAATAGATTCAACCTCTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGATGCCATGGTTCCTACCATAATGATAATAGATTCAACCTCTAAA  600

seq1  ACTGCATGTCAGCCCCAAGGAACTGTTGTCCTGTATAAGACTTGCTGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATGTCAGCCCCAAGGAACTGTTGTCCTGTATAAGACTTGCTGTAG  650

seq1  TCGTGATGTCTCTTCATATAAATAAAGCTCTAATTAACACACTTATGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGATGTCTCTTCATATAAATAAAGCTCTAATTAACACACTTATGTAA  700

seq1  ACAATGCACTATGGTCTGCCTTGTAGGTTCTCTCCTTGTTTGTTGTCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCACTATGGTCTGCCTTGTAGGTTCTCTCCTTGTTTGTTGTCTTC  750

seq1  CTATATACTAGACAATCCATCAGTCAAACTGCATCTGAAACCTAGTATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATACTAGACAATCCATCAGTCAAACTGCATCTGAAACCTAGTATAT  800

seq1  AATTCTTGGCTTTACAAACAAGGAATAAGTCAAGTGTCAGACACATTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTGGCTTTACAAACAAGGAATAAGTCAAGTGTCAGACACATTCCT  850

seq1  GCAATCCCACCATAAAGGAGACTGAGGTAGGAAGATCATCAATTTAATCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCCCACCATAAAGGAGACTGAGGTAGGAAGATCATCAATTTAATCC  900

seq1  TATATTTGAAAACAGTGAAGCCCTTAAAGAAAAAAAGCAAAATCACTGCA  950
      ||||||||||||||||||||||||||||| |||||||| |||||||||||
seq2  TATATTTGAAAACAGTGAAGCCCTTAAAG-AAAAAAGC-AAATCACTGCA  948

seq1  TTTAGGAAAGTATCATAGGCAGATTGTGAATGCCTCATCCTCAGTATAGA  1000
      |||||||||||||||||||||||||||||||| ||||| |||||||||||
seq2  TTTAGGAAAGTATCATAGGCAGATTGTGAATG-CTCAT-CTCAGTATAGA  996

seq1  AAGATTTCATATGTTAGTCATCCTTAGTTTACATGTGACTGAGAGATGAT  1050
      ||||||||||||||||||||||| |||||||||||||||||| | |||||
seq2  AAGATTTCATATGTTAGTCATCC-TAGTTTACATGTGACTGAAAAATGAT  1045

seq1  GGTGACAACT-GGAACTGATCTATCCA-TCCTCCATGACCTTGGTGCCCA  1098
      |||||||||| |||||||||||||||| |||| ||| | | |||||||||
seq2  GGTGACAACTGGGAACTGATCTATCCATTCCTTCATTAAC-TGGTGCCCA  1094

seq1  CA-CCATT--AGTGT--CTGCACAG-AGCAGCCTACTGGGAGATTAGTGC  1142
      || |||||  |||||   ||||||| |||||| ||||||||||| ||  |
seq2  CACCCATTTAAGTGTTCTTGCACAGAAGCAGCTTACTGGGAGATAAGGCC  1144

seq1  TTCCTGCCAAAACTTGAGAATAACAGGAAAGTGTGG  1178
      |  ||||| |||||||| ||||    ||||||||||
seq2  TCTCTGCC-AAACTTGA-AATA--CTGAAAGTGTGG  1176


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