BAC Information

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BAC

Clone NameB6Ng01-078M03
Chromosome10 (Build37)
Map Location 58,422,989 - 58,556,198
singlet/doubletdoublet
Overlap geneSh3md4
Upstream genePkib, Ppia-ps10_506.1, Fabp7, Smpdl3a, EG664783, 4933403O03Rik, EG245263, Gcc2, Lims1, Ranbp2, 6230424H07Rik, LOC100038981, Edar, LOC624335, LOC100039099
Downstream geneSept10, Ankrd57, LOC664892, P4ha1, LOC100039174, Pla2g12b, Oit3, Ccdc109a, LOC100039225, Cbara1, EG664907, LOC664936, Dnajb12, Ddit4, D10Ertd641e, Ascc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078M03.bB6Ng01-078M03.g
ACCDH894368DH894369
length1,134929
definitionDH894368|Mus musculus domesticus DNA, BAC clone: B6Ng01-078M03, 5' end.DH894369|Mus musculus domesticus DNA, BAC clone: B6Ng01-078M03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,555,050 - 58,556,198)(58,422,989 - 58,423,750)
sequence
gaattctctattaagatccatgtccattttgacttgggtcgtctgtctta
ttggctctttagtttttgtatgttttgggatgtgaatccactgtcagacg
cactgtcgggagtgatgctctcctgctccatcggcttccatgtcacctgg
ctgttttctctgtggcctgaacaaaacctcttttatctgattcagttttt
gtagtttctatggcaacgccttcaattcattaatatctttctttggtgct
gcccaattccattgccctgtctttgttccagtttcaactttatgaatgtc
tagaatatagctcgatctgtttcaacgtcttcaaatgcccaattttcaaa
tgcctgtttgattggctggttgtgggctataacctctgggctatatcctc
tgggttgtatcctcctctgggctgtgtcctctgggttgtatcctccaggc
tgtgtcctctgggctatattctccaggctatatcctctgggttgtatcct
cctctgggctgtgtcctctgggctgtattctctaggctatgccctctggg
ctgtatcctcctctgggctgtgtcctctgggttgtgtcctcaggctgtgt
cctctgggctatatcctccaggctatatcctctgggctgtgtcctctggg
ctgtattctctaggctatgtcctctgggctgtatcctcctctgggctgtg
tcctctgggttgtatcctcctctaggctgtgtcctctgggttgtatcctc
tgggttgtgttctctgggctgtatcctctaggttgtatcctctgggtttt
atcctctgggttgtatcctctgggctgcgtcctctgggctgtgtcctcta
ggctgtatcctctgggctgtttatgcagctagtggtttttgttttgtttt
gtttttgtttttttgtttgtttttgcatagccaatatgctggtttccatg
tttaaaggtaagtatttcttcattccaatgagttaagtttgtcgtgtcat
cctttaatgaattggaagcagtctgagcctttgatctttgcttttcctgt
gtattaaactgaagctatgctcttcccataaaggccaagtcattggccct
gcaatgtgtggaacattatcttcctcagtctgac
gaattcattggcaaggaaacgtctgttctgggacaggcctttggctgtat
aacaggcatgaggtgtgtgtcttgttattcttgaagccaacaggaggata
ttatggcttttaccctgggaatcggcctgggttcttggtcatgtttcctc
ttcagttctgggaaacggtccactggttttcagttttccctgaagagcag
cttctttctcatccctccctctagctggctggagccaggctgggtcagtt
atccagaacagggtctggaatagtaatctctctcacattccactttttgc
tcaagaatgtttcaattatccaagtctttggggaatagtgtttttttttt
ttttcctgtttctttgcatgagatgaggatttttgattgagactttattg
actgtgtaaatggctttgggtataatggtcattttcacaataataattca
atcactcatcagcatgagatggcttacattttctattgtcttcacctttg
ttcttcagaggcttgaaattttcattatagaatttggctaagttgattcc
tgggtttttgtttttgttttgaggctgtggcgaatgggaacatgttcata
gcctcgttctctgtgtgtttgttggtggtggttagaaaagctattgattt
ttgtaggttgattctgtatccgaccacattgatcgtttctagaagttttt
ctatggaatgtttaaaatctcttatgcatgattttcatgaaatctgcaaa
tagggttagttttattactacatcagtcaaaatggttttttttttcattt
ccacccatcctcttgaaaagttgatgattttctttctctttacaactaaa
taatattctacatattcatatgtgcatatgaatcacattgtcattatcca
ttcatcagttgatacacatctaggccatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_58555050_58556198
seq2: B6Ng01-078M03.b_48_1181 (reverse)

seq1  GTCAGACTGAAGAAGAATAATGTTCCACACATTTGCGAGGCCAATGGACT  50
      |||||||||| |||| ||||||||||||||| ||||  ||||||| ||||
seq2  GTCAGACTGAGGAAG-ATAATGTTCCACACA-TTGCAGGGCCAAT-GACT  47

seq1  TGGCCTCTATGGGAACGGAGCATGGCTTCAGTTCTAATACACAGGGAAAA  100
      |||||| ||||||||  |||||| ||||||||| ||||||||| ||||||
seq2  TGGCCTTTATGGGAA--GAGCATAGCTTCAGTT-TAATACACA-GGAAAA  93

seq1  GCAAAGATCAAAAGGCTCAGACTGCTTCCAATTCATTTAAAAGGATGACA  150
      ||||||||| |||||||||||||||||||||||||||  |||||||||||
seq2  GCAAAGATC-AAAGGCTCAGACTGCTTCCAATTCATT--AAAGGATGACA  140

seq1  CGACAAAACTTAACTCATTGGAATGAAGAAATACCTTACCTTTAAAAACA  200
      |||| |||||||||||||||||||||||||||| |||||||||  |||||
seq2  CGAC-AAACTTAACTCATTGGAATGAAGAAATA-CTTACCTTT--AAACA  186

seq1  TGGAAACCAGCATATTGGCTATGCAAAAACAAACAAAAAAAACAAAAACA  250
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGGAAACCAGCATATTGGCTATGCAAAAACAAAC-AAAAAAACAAAAACA  235

seq1  AAACAAAACAAAAACCACTAGCTGCATAAACAGCCCAGAGGATACAGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACAAAAACCACTAGCTGCATAAACAGCCCAGAGGATACAGCCT  285

seq1  AGAGGACACAGCCCAGAGGACGCAGCCCAGAGGATACAACCCAGAGGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACACAGCCCAGAGGACGCAGCCCAGAGGATACAACCCAGAGGATA  335

seq1  AAACCCAGAGGATACAACCTAGAGGATACAGCCCAGAGAACACAACCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAGAGGATACAACCTAGAGGATACAGCCCAGAGAACACAACCCAG  385

seq1  AGGATACAACCCAGAGGACACAGCCTAGAGGAGGATACAACCCAGAGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATACAACCCAGAGGACACAGCCTAGAGGAGGATACAACCCAGAGGAC  435

seq1  ACAGCCCAGAGGAGGATACAGCCCAGAGGACATAGCCTAGAGAATACAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCCAGAGGAGGATACAGCCCAGAGGACATAGCCTAGAGAATACAGC  485

seq1  CCAGAGGACACAGCCCAGAGGATATAGCCTGGAGGATATAGCCCAGAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGACACAGCCCAGAGGATATAGCCTGGAGGATATAGCCCAGAGGA  535

seq1  CACAGCCTGAGGACACAACCCAGAGGACACAGCCCAGAGGAGGATACAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCTGAGGACACAACCCAGAGGACACAGCCCAGAGGAGGATACAGC  585

seq1  CCAGAGGGCATAGCCTAGAGAATACAGCCCAGAGGACACAGCCCAGAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGGCATAGCCTAGAGAATACAGCCCAGAGGACACAGCCCAGAGGA  635

seq1  GGATACAACCCAGAGGATATAGCCTGGAGAATATAGCCCAGAGGACACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACAACCCAGAGGATATAGCCTGGAGAATATAGCCCAGAGGACACAG  685

seq1  CCTGGAGGATACAACCCAGAGGACACAGCCCAGAGGAGGATACAACCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGGATACAACCCAGAGGACACAGCCCAGAGGAGGATACAACCCAG  735

seq1  AGGATATAGCCCAGAGGTTATAGCCCACAACCAGCCAATCAAACAGGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATAGCCCAGAGGTTATAGCCCACAACCAGCCAATCAAACAGGCAT  785

seq1  TTGAAAATTGGGCATTTGAAGACGTTGAAACAGATCGAGCTATATTCTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATTGGGCATTTGAAGACGTTGAAACAGATCGAGCTATATTCTAG  835

seq1  ACATTCATAAAGTTGAAACTGGAACAAAGACAGGGCAATGGAATTGGGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCATAAAGTTGAAACTGGAACAAAGACAGGGCAATGGAATTGGGCA  885

seq1  GCACCAAAGAAAGATATTAATGAATTGAAGGCGTTGCCATAGAAACTACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAAAGAAAGATATTAATGAATTGAAGGCGTTGCCATAGAAACTACA  935

seq1  AAAACTGAATCAGATAAAAGAGGTTTTGTTCAGGCCACAGAGAAAACAGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGAATCAGATAAAAGAGGTTTTGTTCAGGCCACAGAGAAAACAGC  985

seq1  CAGGTGACATGGAAGCCGATGGAGCAGGAGAGCATCACTCCCGACAGTGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGACATGGAAGCCGATGGAGCAGGAGAGCATCACTCCCGACAGTGC  1035

seq1  GTCTGACAGTGGATTCACATCCCAAAACATACAAAAACTAAAGAGCCAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGACAGTGGATTCACATCCCAAAACATACAAAAACTAAAGAGCCAAT  1085

seq1  AAGACAGACGACCCAAGTCAAAATGGACATGGATCTTAATAGAGAATTC  1149
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGACGACCCAAGTCAAAATGGACATGGATCTTAATAGAGAATTC  1134

seq1: chr10_58422989_58423750
seq2: B6Ng01-078M03.g_71_833

seq1  GAATTCATTGGCAAGGAAACGTCTGTTCTGGGACAGGCCTTTGGCTGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGGCAAGGAAACGTCTGTTCTGGGACAGGCCTTTGGCTGTAT  50

seq1  AACAGGCATGAGGTGTGTGTCTTGTTATTCTTGAAGCCAACAGGAGGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGCATGAGGTGTGTGTCTTGTTATTCTTGAAGCCAACAGGAGGATA  100

seq1  TTATGGCTTTTACCCTGGGAATCGGCCTGGGTTCTTGGTCATGTTTCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGCTTTTACCCTGGGAATCGGCCTGGGTTCTTGGTCATGTTTCCTC  150

seq1  TTCAGTTCTGGGAAACGGTCCACTGGTTTTCAGTTTTCCCTGAAGAGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTCTGGGAAACGGTCCACTGGTTTTCAGTTTTCCCTGAAGAGCAG  200

seq1  CTTCTTTCTCATCCCTCCCTCTAGCTGGCTGGAGCCAGGCTGGGTCAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTCTCATCCCTCCCTCTAGCTGGCTGGAGCCAGGCTGGGTCAGTT  250

seq1  ATCCAGAACAGGGTCTGGAATAGTAATCTCTCTCACATTCCACTTTTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGAACAGGGTCTGGAATAGTAATCTCTCTCACATTCCACTTTTTGC  300

seq1  TCAAGAATGTTTCAATTATCCAAGTCTTTGGGGAATAGTGTTTTTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAATGTTTCAATTATCCAAGTCTTTGGGGAATAGTGTTTTTTTTTT  350

seq1  TTTTCCTGTTTCTTTGCATGAGATGAGGATTTTTGATTGAGACTTTATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTGTTTCTTTGCATGAGATGAGGATTTTTGATTGAGACTTTATTG  400

seq1  ACTGTGTAAATGGCTTTGGGTATAATGGTCATTTTCACAATAATAATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTAAATGGCTTTGGGTATAATGGTCATTTTCACAATAATAATTCA  450

seq1  ATCACTCATCAGCATGAGATGGCTTACATTTTCTATTGTCTTCACCTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTCATCAGCATGAGATGGCTTACATTTTCTATTGTCTTCACCTTTG  500

seq1  TTCTTCAGAGGCTTGAAATTTTCATTATAGAATTTGGCTAAGTTGATTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAGAGGCTTGAAATTTTCATTATAGAATTTGGCTAAGTTGATTCC  550

seq1  TGGGTTTTTGTTTTTGTTTTGAGGCTGTGGCGAATGGGAACATGTTCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTTTGTTTTTGTTTTGAGGCTGTGGCGAATGGGAACATGTTCATA  600

seq1  GCCTCGTTCTCTGTGTGTTTGTTGGTGGTGGTTAGAAAAGCTATTGATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCGTTCTCTGTGTGTTTGTTGGTGGTGGTTAGAAAAGCTATTGATTT  650

seq1  TTGTAGGTTGATTCTGTATCCGACCACATTGATCGTTTCTAGAAGTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGGTTGATTCTGTATCCGACCACATTGATCGTTTCTAGAAGTTTTT  700

seq1  CTATGGAATGTTTAAAATCTCTTATGCATGA-TTTCATGAAATCTGCAAA  749
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTATGGAATGTTTAAAATCTCTTATGCATGATTTTCATGAAATCTGCAAA  750

seq1  TAGGGTTAGTTTT  762
      |||||||||||||
seq2  TAGGGTTAGTTTT  763