BAC Information

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BAC

Clone NameB6Ng01-079G13
Chromosome10 (Build37)
Map Location 61,113,690 - 61,257,147
singlet/doubletdoublet
Overlap genePpa1, Sar1a, Tysnd1, Aifm2, H2afy2, LOC100039284
Upstream geneCdh23, Slc29a3, Unc5b, Pcbd1, Sgpl1, 1700021K02Rik, Adamts14, Prf1, EG237361, X99384, Nodal, Eif4ebp2, D830039M14Rik, Lrrc20, Npffr1
Downstream geneCol13a1, EG436164, EG432466, 2010107G23Rik, Neurog3, Tspan15, Tacr2, Hk1, 2210417K05Rik, Hkdc1, Supv3l1, Vps26a, Srgn, 2510003E04Rik, Ddx21, Ddx50, Stox1, Ccar1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079G13.bB6Ng01-079G13.g
ACCDH894825DH894826
length1,1031,073
definitionDH894825|Mus musculus domesticus DNA, BAC clone: B6Ng01-079G13, 5' end.DH894826|Mus musculus domesticus DNA, BAC clone: B6Ng01-079G13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,113,690 - 61,114,804)(61,256,166 - 61,257,147)
sequence
gaattcagctaagtcctgaattccccacaataggaagtaacatccagtgt
aaagcagaaggtgcacacaggatgaaaacctggtcctggggagggtcggg
agtgcaaactacactcctgctgttttctagctgtttacggctctctgtct
ccctggctggggtagaactgcctcctatgtagaccaagctggcttcaaag
tcacagagcacttttgtcttggcctcctggctgctgcctttggtttttga
gtatttttgagacagggtctgctgtagcacctcctaggttggctccagcc
tgactgtgtgcacaggtatgaccttgaactcccgatcttctcagttgctg
ggtttgcaggcatgcagttcccgggctcaggtggaaagtggtttcctgtg
ttttgttcttttccccctccagtgtgaggaggagtgaacttagggctttg
cacatgccaggagaaattgtttaccactgacctatatcaccaacaccttg
ttttttgatttgttcttgttttatggtataggagtaatatcttgctgtta
agaagtgtttattttgtgcatttggaaatgtaaccagtcacaacagcgtt
tcttacttattttacagaaaatgagaaagggcagtacatttctccatttc
atgatgttccaatttatgcagacaaggtaagaatctctgacattccaaaa
tgatctccccctccctaattaattaattaattaattaattaattttgagg
catggtctctttacatattcttggctgtcctggaacacactctgtctggt
cttgaactcagagatctgcctgcctctgcctctggagttaaagtcacgac
accgtgtccagcaaacacagtctatttaattggatccctagttggacata
gtgaattttcttatctccatcaacttgaaatccctcctgtgctttcatct
catggtcattgagtagctagaagcagtagtcatcagatcattggattaaa
gagcagctattaattagggatgaagagagacagagattttaggcgcctct
ttgtgggggtggtggtcacattggtagagtgtttggaactggagcctctg
att
gaattcatttctgcctgcctctgcctcctgagtgctgggattaaaggggt
gcgccacaatgcccggctgagaatcagcattttgaggccagccttagcta
cacaaccagtttaagcccaacctcagctacatatccaatttaaggcccac
cttagctacacgaccagtttgaggctgctacaaggcacatgagacctgtt
tcaaactaaaaggagggagagagaacagaagatttttaaagggcagaatt
gataaagttatttcttaaatagatgacttgggtttagggcttgtgaggtg
gctcagtggctaaagaggcgtgccaccaaacttgatgacccgagttaaat
aaatccctagaacacacacggtgggaggagagaactgactccctcaagtc
aacctcagacctccagatgagaggcatggcacatgtacccacacacacac
cagacacacacacacaaacacacacacacacacaaacacacacacacaca
cacacacaccagatacacacacacacacaccagatacacacacaccagac
acacacacacaaacacacacatacacacaaacacacacacacacacacac
accagatacacacacacacaccagatacacacacaccagatacacacaca
caaacacacacacacacacacatacacacacacacacacacatacacaca
aacacacacacacacaccagacacacacacacagacacacacacatacac
acaaacacacgcacactcacaccagatacacacacacacaccagatacac
acacacacaaacacacacatacacacactcacgtactcacaaacttctca
ctcacactccagatactcaatattactgatgtatgaaataaaacaaatga
cttggggatcgatttccagtagatccacaaacaaccgttttgcacacaat
aactctcctctccccataagggatgttgagggcctatctatgaaactgtt
cagctgaaagtttcttgttgatggttgattctgttcatttagagggtact
ttccaggtaagcccttggcaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_61113690_61114804
seq2: B6Ng01-079G13.b_47_1150

seq1  GGAATTCAGCTAAGTCCTGAATTCCCCACAATAGGAAGTAACATCCAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCAGCTAAGTCCTGAATTCCCCACAATAGGAAGTAACATCCAGTG  50

seq1  TAAAGCAGAAGGTGCACACAGGATGAAAACCTGGTCCTGGGGAGGGTCGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCAGAAGGTGCACACAGGATGAAAACCTGGTCCTGGGGAGGGTCGG  100

seq1  GAGTGCAAACTACACTCCTGCTGTTTTCTAGCTGTTTACGGCTCTCTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCAAACTACACTCCTGCTGTTTTCTAGCTGTTTACGGCTCTCTGTC  150

seq1  TCCCTGGCTGGGGTAGAACTGCCTCCTATGTAGACCAAGCTGGCTTCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGCTGGGGTAGAACTGCCTCCTATGTAGACCAAGCTGGCTTCAAA  200

seq1  GTCACAGAGCACTTTTGTCTTGGCCTCCTGGCTGCTGCCTTTGGTTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGAGCACTTTTGTCTTGGCCTCCTGGCTGCTGCCTTTGGTTTTTG  250

seq1  AGTATTTTTGAGACAGGGTCTGCTGTAGCACCTCCTAGGTTGGCTCCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTTTGAGACAGGGTCTGCTGTAGCACCTCCTAGGTTGGCTCCAGC  300

seq1  CTGACTGTGTGCACAGGTATGACCTTGAACTCCCGATCTTCTCAGTTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGTGTGCACAGGTATGACCTTGAACTCCCGATCTTCTCAGTTGCT  350

seq1  GGGTTTGCAGGCATGCAGTTCCCGGGCTCAGGTGGAAAGTGGTTTCCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTGCAGGCATGCAGTTCCCGGGCTCAGGTGGAAAGTGGTTTCCTGT  400

seq1  GTTTTGTTCTTTTCCCCCTCCAGTGTGAGGAGGAGTGAACTTAGGGCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTCTTTTCCCCCTCCAGTGTGAGGAGGAGTGAACTTAGGGCTTT  450

seq1  GCACATGCCAGGAGAAATTGTTTACCACTGACCTATATCACCAACACCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGCCAGGAGAAATTGTTTACCACTGACCTATATCACCAACACCTT  500

seq1  GTTTTTTGATTTGTTCTTGTTTTATGGTATAGGAGTAATATCTTGCTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTGATTTGTTCTTGTTTTATGGTATAGGAGTAATATCTTGCTGTT  550

seq1  AAGAAGTGTTTATTTTGTGCATTTGGAAATGTAACCAGTCACAACAGCGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTGTTTATTTTGTGCATTTGGAAATGTAACCAGTCACAACAGCGT  600

seq1  TTCTTACTTATTTTACAGAAAATGAGAAAGGGCAGTACATTTCTCCATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACTTATTTTACAGAAAATGAGAAAGGGCAGTACATTTCTCCATTT  650

seq1  CATGATGTTCCAATTTATGCAGACAAGGTAAGAATCTCTGACATTCCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGTTCCAATTTATGCAGACAAGGTAAGAATCTCTGACATTCCAAA  700

seq1  ATGATCTCCCCCTCCCTAATTAATTAATTAATTAATTAATTAATTTTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTCCCCCTCCCTAATTAATTAATTAATTAATTAATTAATTTTGAG  750

seq1  GCATGGTCTCTTTACATATTCTTGGCTGTCCTGGAACACACTCTGTCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGTCTCTTTACATATTCTTGGCTGTCCTGGAACACACTCTGTCTGG  800

seq1  TCTTGAACTCAGAGATCTGCCTGCCTCTGCCTCTGGAGTTAAAGTCACGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAACTCAGAGATCTGCCTGCCTCTGCCTCTGGAGTTAAAGTCACGA  850

seq1  CACCGTGTCCAGCAAACACAGTCTATTTAATTGGATCCCTAGTTGGACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGTGTCCAGCAAACACAGTCTATTTAATTGGATCCCTAGTTGGACAT  900

seq1  AGTGAATTTTCTTAATCTCCATCAACTTGAAATCCCTCCTGTGCTTTCAT  950
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGTGAATTTTCTT-ATCTCCATCAACTTGAAATCCCTCCTGTGCTTTCAT  949

seq1  CTCATGGTTCATTGAGTAGCTAAGAAGCCAGTAGTCAATCAGATCATTGG  1000
      ||||||| ||||||||||||| ||||| |||||||| |||||||||||||
seq2  CTCATGG-TCATTGAGTAGCT-AGAAG-CAGTAGTC-ATCAGATCATTGG  995

seq1  ATTAAAGAAGCAGCTATAAATTAGGGGAGGAAGAGAGACAGAAGATTTTA  1050
      ||||||| ||||||||| ||||| |||| |||||||||||| ||||||| 
seq2  ATTAAAG-AGCAGCTATTAATTA-GGGATGAAGAGAGACAG-AGATTTT-  1041

seq1  AGCCGCCTCTTTGTGTGTGTGTGTGTCACATTGGTATGAGTGTTTGGAAC  1100
      || |||||||||||| | |||   |||||||||||| |||||||||||||
seq2  AGGCGCCTCTTTGTGGGGGTGGTGGTCACATTGGTA-GAGTGTTTGGAAC  1090

seq1  TGAAGCCTTCTGATT  1115
      || |||| |||||||
seq2  TGGAGCC-TCTGATT  1104

seq1: chr10_61256166_61257147
seq2: B6Ng01-079G13.g_69_1141 (reverse)

seq1  AGTTGCCAAGTGACATACCTGGAAAGTTACCTGTTAAAATGAAACAGACT  50
      |||||||||| | | ||||||||||||  ||| |  ||||| |||||| |
seq2  AGTTGCCAAG-GGCTTACCTGGAAAGTACCCTCT--AAATG-AACAGAAT  46

seq1  CAACCTATCAAC-AGAAACTTTCAGCTGAAACAGTTCTACAATAGGATAG  99
      ||||| |||||| ||||||||||||||| |||||||  | |    |||| 
seq2  CAACC-ATCAACAAGAAACTTTCAGCTG-AACAGTTTCATA----GATA-  89

seq1  GGCCCTCGACCTGCCTTATGGGGGAGGGGGAGTTATTGTGTGCAGAGACG  149
      ||||||| || | ||||||||||   || ||||||||||||||| | |||
seq2  GGCCCTCAACATCCCTTATGGGGAGAGGAGAGTTATTGTGTGCA-AAACG  138

seq1  TTTGTTCTGTTGGATCTACTGGAAATCGATCCACAAGTCATTTGTTTTAT  199
       ||||| || |||||||||||||||||||||| |||||||||||||||||
seq2  GTTGTT-TG-TGGATCTACTGGAAATCGATCCCCAAGTCATTTGTTTTAT  186

seq1  TTCATACATCAGTGATATTTGTGTATCTGGTGTGTGTGTGTGTGTGTTTG  249
      ||||||||||||| ||| ||| |||||||| ||||| ||| |   |||||
seq2  TTCATACATCAGTAATA-TTGAGTATCTGGAGTGTGAGTGAG-AAGTTTG  234

seq1  TGTGTATGTGTGTGTGTGTATGTGTGTGTTTGTGTGTGTGTGTATCTGGT  299
      || ||| ||| |||||||||||||||||||||||||||||||||||||||
seq2  TGAGTACGTGAGTGTGTGTATGTGTGTGTTTGTGTGTGTGTGTATCTGGT  284

seq1  GTGTGTGTGTGTATCTGGTGTGTGTGTGTGTGTGTTTGTGTGTATGTGTG  349
      |||||||||||||||||||||| ||||| |||||||||||||||||||||
seq2  GTGTGTGTGTGTATCTGGTGTGAGTGTGCGTGTGTTTGTGTGTATGTGTG  334

seq1  TGTGTTTGTGTGTGTGTGTCTGGTGTGTGTGTGTGTGTTTGTGTGTATGT  399
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTGTGTGTGTGTGTCTGGTGTGTGTGTGTGTGTTTGTGTGTATGT  384

seq1  GTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTTT------------  437
      ||||||||||||||||||||||||||||||||||||||            
seq2  GTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTTTGTGTGTGTGTAT  434

seq1  --------------------------------------------------  437
                                                        
seq2  CTGGTGTGTGTGTATCTGGTGTGTGTGTGTGTATCTGGTGTGTGTGTGTG  484

seq1  --------------------------------------------GTGTGT  443
                                                  ||||||
seq2  TGTGTGTGTTTGTGTGTATGTGTGTGTTTGTGTGTGTGTGTCTGGTGTGT  534

seq1  GTGTATCTGGTGTGTGTGTGTGTGTATCTGGTGTGTGTGTGTGTGTGTGT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATCTGGTGTGTGTGTGTGTGTATCTGGTGTGTGTGTGTGTGTGTGT  584

seq1  GTGTTTGTGTGTGTGTGTGTGTTTGTGTGTGTGTGTCTGGTGTGTGTGTG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGTGTGTGTGTGTGTGTTTGTGTGTGTGTGTCTGGTGTGTGTGTG  634

seq1  GGTACATGTGCCATGCCTCTCATCTGGAGGTCTGAGGTTGACTTGAGGGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACATGTGCCATGCCTCTCATCTGGAGGTCTGAGGTTGACTTGAGGGA  684

seq1  GTCAGTTCTCTCCTCCCACCGTGTGTGTTCTAGGGATTTATTTAACTCGG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTTCTCTCCTCCCACCGTGTGTGTTCTAGGGATTTATTTAACTCGG  734

seq1  GTCATCAAGTTTGGTGGCACGCCTCTTTAGCCACTGAGCCACCTCACAAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCAAGTTTGGTGGCACGCCTCTTTAGCCACTGAGCCACCTCACAAG  784

seq1  CCCTAAACCCAAGTCATCTATTTAAGAAATAACTTTATCAATTCTGCCCT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAACCCAAGTCATCTATTTAAGAAATAACTTTATCAATTCTGCCCT  834

seq1  TTAAAAATCTTCTGTTCTCTCTCCCTCCTTTTAGTTTGAAACAGGTCTCA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATCTTCTGTTCTCTCTCCCTCCTTTTAGTTTGAAACAGGTCTCA  884

seq1  TGTGCCTTGTAGCAGCCTCAAACTGGTCGTGTAGCTAAGGTGGGCCTTAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTTGTAGCAGCCTCAAACTGGTCGTGTAGCTAAGGTGGGCCTTAA  934

seq1  ATTGGATATGTAGCTGAGGTTGGGCTTAAACTGGTTGTGTAGCTAAGGCT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATATGTAGCTGAGGTTGGGCTTAAACTGGTTGTGTAGCTAAGGCT  984

seq1  GGCCTCAAAATGCTGATTCTCAGCCGGGCATTGTGGCGCACCCCTTTAAT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCAAAATGCTGATTCTCAGCCGGGCATTGTGGCGCACCCCTTTAAT  1034

seq1  CCCAGCACTCAGGAGGCAGAGGCAGGCAGAAATGAATTC  982
      |||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACTCAGGAGGCAGAGGCAGGCAGAAATGAATTC  1073