BAC Information

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BAC

Clone NameB6Ng01-079K08
Chromosome10 (Build37)
Map Location 106,544,289 - 106,644,875
singlet/doubletdoublet
Overlap gene8430416H19Rik
Upstream geneEG639162, Ppfia2, Olfr1556-ps1
Downstream geneLin7a, Myf5, Myf6, Ptprq, EG628870, Ppp1r12a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079K08.bB6Ng01-079K08.g
ACCDH894996DH894997
length1,0951,208
definitionDH894996|Mus musculus domesticus DNA, BAC clone: B6Ng01-079K08, 5' end.DH894997|Mus musculus domesticus DNA, BAC clone: B6Ng01-079K08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,544,289 - 106,545,414)(106,643,640 - 106,644,875)
sequence
gaattcatgtaaaattgggagcatctacagaaaatgtgtacaaatgagtg
gtttcaccccaaaatctctttgggctttaaacctcttttggctatagtta
ccaaaaggttgccagtgaaggaagttgggtggtggtacaatcatccaatc
tttacaatttctgagatttcttcttagtctacagcttcttcaagataaaa
tcttaaaaggcaaacaaaaagactgaaaagaattataataaacacacaca
gatacatcatatacatagtatatagatagactatagaatatagataaata
gataggtagataggtagatagctagatagataattgatagatgatattta
ataaagcaatcatattttatgtggaaactgtatttttctaccatttttat
atttcttgagattgtcaacttaaattttaaaataatattaaagttatggt
tgaataaaaggcaaggatataaacttcagccatgattatttctgagttat
gcaatgtcaatataaattaagtcacacctaagcagtaaaacctaagagat
tatgtttataaaatctctcctcttttaattaaatcccatatttccattca
aactccacatctcaataaaagtaccttccacatagacagaaacataacat
gcaaagttacacagataactggactaattattggttataatttaaattac
tgagacaaatagaaaagaatgtatcctgcccctttttttccctagtttca
tcctgaaaccatcagaaaataatgccagacaggactctttgctacatctt
tgctaaccttccacaggccacattcataaatgaaacacttcccattagca
ggtcagtactttgaagcctgaatacagtgcagcccacttaattctccaag
agatcattatctagctggtgctaatcaagggcatatttccctttatctct
cttttgctacctatctttctcacctctactcactctacactcactaaaaa
gagagactcccagagataaatgaaatgactgattctttatctactgaggc
caatagatgaagcagccactgtctgcgatagaatcgtttatagta
gaattctatggatttaacttacattagcaaattaatattaaaaaactata
ttgagaaataaagaaaatactacacctgatgaaaagagatggaaataatt
tatccataggtgtgtaaaatgaggaagatttagactgatttatacattaa
atcatatatatatatacatacatacatacatacatataatgcatatgaat
atacagatttccacagaacagtgattgtgtattctttatactgtaataaa
tgtggcatcaatactctgaggatgcctgacatatatttttaatgattctt
ctttcatctgctgtgttgttgttctaagaaaataaaatgctaatacttag
acctagaaaaattaaggcctggtagaggattctaaattttaaaaatccac
tacatttacataagatatgcaccataaacatgtactataaaagagatacc
ataaaaagagctgtaaaataaacacaggtaaaatatcataaagtaaggtt
ataaaatgcaaattttaagatgcaaaaagaattagtaagaaggataactt
gtagagaatttagataaaaacatttttcatctatttattttgtttcagtt
gaatcaaagagttttgcttctaaaacaagtaatagttttcccactacaaa
cagtagtgtggctgtgactaaccacaccagcagagaataatgagaattat
cccacagaatgattttgatgtgtcagaacaatgttactcttagtgaaaat
gaaagaacctgtatatttgggtgttaaatatatacatatcttgcatactt
ttatttcaaactacatgtctgcatttcttaccatcaacattgtaaaaaat
gttatttcttattcaccaataattaataaatagtaatttggatatttttg
tttgcatttttgctgtttaaaagtgaaggcaatttttataggaagaatga
ctccattaatttttcatttatgacaaacaaattttaaagagtagctgcag
ttgttccacctatcagattttaatatatatatgtatatataggcttctcc
atttccagaatacctcaaagagtctgatcattcctctgttctaaagagtt
tgggtccctacttgacgataattctggccagaattatcctagttccttga
aatcatctgtacagaaggtgtgtgggaattctaatagtcagtgagtctct
gagccttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_106544289_106545414
seq2: B6Ng01-079K08.b_48_1142

seq1  GAATTCATGTAAAATTGGGAGCATCTACAGAAAATGTGTACAAATGAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTAAAATTGGGAGCATCTACAGAAAATGTGTACAAATGAGTG  50

seq1  GTTTCACCCCAAAATCTCTTTGGGCTTTAAACCTCTTTTGGCTATAGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCACCCCAAAATCTCTTTGGGCTTTAAACCTCTTTTGGCTATAGTTA  100

seq1  CCAAAAGGTTGCCAGTGAAGGAAGTTGGGTGGTGGTACAATCATCCAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGGTTGCCAGTGAAGGAAGTTGGGTGGTGGTACAATCATCCAATC  150

seq1  TTTACAATTTCTGAGATTTCTTCTTAGTCTACAGCTTCTTCAAGATAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAATTTCTGAGATTTCTTCTTAGTCTACAGCTTCTTCAAGATAAAA  200

seq1  TCTTAAAAGGCAAACAAAAAGACTGAAAAGAATTATAATAAACACACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAAGGCAAACAAAAAGACTGAAAAGAATTATAATAAACACACACA  250

seq1  GATACATCATATACATAGTATATAGATAGACTATAGAATATAGATAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACATCATATACATAGTATATAGATAGACTATAGAATATAGATAAATA  300

seq1  GATAGGTAGATAGGTAGATAGCTAGATAGATAATTGATAGATGATATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGTAGATAGGTAGATAGCTAGATAGATAATTGATAGATGATATTTA  350

seq1  ATAAAGCAATCATATTTTATGTGGAAACTGTATTTTTCTACCATTTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCAATCATATTTTATGTGGAAACTGTATTTTTCTACCATTTTTAT  400

seq1  ATTTCTTGAGATTGTCAACTTAAATTTTAAAATAATATTAAAGTTATGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTGAGATTGTCAACTTAAATTTTAAAATAATATTAAAGTTATGGT  450

seq1  TGAATAAAAGGCAAGGATATAAACTTCAGCCATGATTATTTCTGAGTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAAAGGCAAGGATATAAACTTCAGCCATGATTATTTCTGAGTTAT  500

seq1  GCAATGTCAATATAAATTAAGTCACACCTAAGCAGTAAAACCTAAGAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTCAATATAAATTAAGTCACACCTAAGCAGTAAAACCTAAGAGAT  550

seq1  TATGTTTATAAAATCTCTCCTCTTTTAATTAAATCCCATATTTCCATTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTATAAAATCTCTCCTCTTTTAATTAAATCCCATATTTCCATTCA  600

seq1  AACTCCACATCTCAATAAAAGTACCTTCCACATAGACAGAAACATAACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCACATCTCAATAAAAGTACCTTCCACATAGACAGAAACATAACAT  650

seq1  GCAAAGTTACACAGATAACTGGACTAATTATTGGTTATAATTTAAATTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGTTACACAGATAACTGGACTAATTATTGGTTATAATTTAAATTAC  700

seq1  TGAGACAAATAGAAAAGAATGTATCCTGCCCCTTTTTTTCCCTAGTTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAAATAGAAAAGAATGTATCCTGCCCCTTTTTTTCCCTAGTTTCA  750

seq1  TCCTGAAACCATCAGAAAATAATGCCAGACAGGACTCTTTGCTACATCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAAACCATCAGAAAATAATGCCAGACAGGACTCTTTGCTACATCTT  800

seq1  TGCTAACCTTCCACAGGCCACATTCATAAATGAAACACTTCCCATTAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAACCTTCCACAGGCCACATTCATAAATGAAACACTTCCCATTAGCA  850

seq1  GGTCAGTACTTTGAAGCCTGAATACAGTGCAGCCCACTTAATTCTCCAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGTACTTTGAAGCCTGAATACAGTGCAGCCCACTTAATTCTCCAAG  900

seq1  AGATCATTATCTAGCTGGTGCTAATCAAGGGCATTATTTCCCTTTATTCT  950
      ||||||||||||||||||||||||||||||||| |||||||||||| |||
seq2  AGATCATTATCTAGCTGGTGCTAATCAAGGGCA-TATTTCCCTTTA-TCT  948

seq1  CTCTTTTTGCTACCTATCTTTTCTCACCCTCTACCTTCCACTTCTTACCA  1000
      ||| |||||||||||||| ||||||| |||||||    ||||        
seq2  CTC-TTTTGCTACCTATC-TTTCTCA-CCTCTAC---TCACT--------  984

seq1  CCTCCAC---CTAAAAAGGAGAGACTCCCCAGAAGGATAAAATGAAAATG  1047
       || |||   ||||||| |||||||| ||||||  ||| ||||| |||||
seq2  -CTACACTCACTAAAAA-GAGAGACT-CCCAGA--GAT-AAATG-AAATG  1027

seq1  ACTTGATTCTTTTATCTACTGAAGGGCCCATTAGATGGAAAGCAGCCACT  1097
      || |||||| ||||||||||||   | ||| ||||||  |||||||||||
seq2  AC-TGATTC-TTTATCTACTGA---GGCCAATAGATG--AAGCAGCCACT  1070

seq1  GTCTGCCAGAATAGAATCGGTTTATAGTA  1126
      ||||||    |||||||| ||||||||||
seq2  GTCTGC---GATAGAATC-GTTTATAGTA  1095

seq1: chr10_106643640_106644875
seq2: B6Ng01-079K08.g_69_1276 (reverse)

seq1  CAAGAGCTCAGAGACCCCCACTTGACCTGATA-TAGAATCCCCACACCAA  49
      |||| |||||||||| | |   ||||    || |||||| |||||||  |
seq2  CAAG-GCTCAGAGACTCAC---TGAC----TATTAGAATTCCCACAC--A  40

seq1  CCTTCTGGTAACAGATGATATTCCAAGAGAACTAGGATAATCTGGGCCAG  99
      |||||||   |||||||  ||| |||| |||||||||||||   ||||||
seq2  CCTTCTG--TACAGATG--ATTTCAAG-GAACTAGGATAATTCTGGCCAG  85

seq1  -ATTATCGTCAAAGTAGTGAACCCAAACTCTTTTAGAACAGAGAAATGAT  148
       ||||||||| |||||| | |||||||||| |||||||||||| ||||||
seq2  AATTATCGTC-AAGTAG-GGACCCAAACTC-TTTAGAACAGAGGAATGAT  132

seq1  CAAGACTTCTGTGAAGTATTCTTGGAAAATGGAGAAGCCTATATATACAT  198
      | |||| ||| ||| |||||||  | ||||||||||||||||||||||||
seq2  C-AGAC-TCTTTGAGGTATTCT--GGAAATGGAGAAGCCTATATATACAT  178

seq1  ATATATATTAAAAATCCTGATAGGTGGAAACAAACTGCAGCTAACTCTTT  248
      |||||||||||||   |||||||||||||   |||||||||| |||| ||
seq2  ATATATATTAAAA--TCTGATAGGTGGAA--CAACTGCAGCT-ACTC-TT  222

seq1  TAAAATTTGTTTGTCATAAATGAAAAATTAATGGAGTCATTCTTCCTATA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTGTTTGTCATAAATGAAAAATTAATGGAGTCATTCTTCCTATA  272

seq1  AAAATTGCCTTCACTTTTTAAAACAGCAAAAATGCAAACAAAAATATCCA  348
      ||||||||||||||||||  ||||||||||||||||||||||||||||||
seq2  AAAATTGCCTTCACTTTT--AAACAGCAAAAATGCAAACAAAAATATCCA  320

seq1  AATTACTATTTATTAATTATTGGTGAATAAGAAATAACATTTTTTACAAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTATTTATTAATTATTGGTGAATAAGAAATAACATTTTTTACAAT  370

seq1  GTTGATGGTAAGAAATGCAGACATGTAGTTTGAAATAAAAGTATGCAAGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATGGTAAGAAATGCAGACATGTAGTTTGAAATAAAAGTATGCAAGA  420

seq1  TATGTATATATTTAACACCCAAATATACAGGTTCTTTCATTTTCACTAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATATATTTAACACCCAAATATACAGGTTCTTTCATTTTCACTAAG  470

seq1  AGTAACATTGTTCTGACACATCAAAATCATTCTGTGGGATAATTCTCATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACATTGTTCTGACACATCAAAATCATTCTGTGGGATAATTCTCATT  520

seq1  ATTCTCTGCTGGTGTGGTTAGTCACAGCCACACTACTGTTTGTAGTGGGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTGCTGGTGTGGTTAGTCACAGCCACACTACTGTTTGTAGTGGGA  570

seq1  AAACTATTACTTGTTTTAGAAGCAAAACTCTTTGATTCAACTGAAACAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATTACTTGTTTTAGAAGCAAAACTCTTTGATTCAACTGAAACAAA  620

seq1  ATAAATAGATGAAAAATGTTTTTATCTAAATTCTCTACAAGTTATCCTTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAGATGAAAAATGTTTTTATCTAAATTCTCTACAAGTTATCCTTC  670

seq1  TTACTAATTCTTTTTGCATCTTAAAATTTGCATTTTATAACCTTACTTTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAATTCTTTTTGCATCTTAAAATTTGCATTTTATAACCTTACTTTA  720

seq1  TGATATTTTACCTGTGTTTATTTTACAGCTCTTTTTATGGTATCTCTTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTTTACCTGTGTTTATTTTACAGCTCTTTTTATGGTATCTCTTTT  770

seq1  ATAGTACATGTTTATGGTGCATATCTTATGTAAATGTAGTGGATTTTTAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTACATGTTTATGGTGCATATCTTATGTAAATGTAGTGGATTTTTAA  820

seq1  AATTTAGAATCCTCTACCAGGCCTTAATTTTTCTAGGTCTAAGTATTAGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGAATCCTCTACCAGGCCTTAATTTTTCTAGGTCTAAGTATTAGC  870

seq1  ATTTTATTTTCTTAGAACAACAACACAGCAGATGAAAGAAGAATCATTAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTTCTTAGAACAACAACACAGCAGATGAAAGAAGAATCATTAA  920

seq1  AAATATATGTCAGGCATCCTCAGAGTATTGATGCCACATTTATTACAGTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATGTCAGGCATCCTCAGAGTATTGATGCCACATTTATTACAGTA  970

seq1  TAAAGAATACACAATCACTGTTCTGTGGAAATCTGTATATTCATATGCAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAATACACAATCACTGTTCTGTGGAAATCTGTATATTCATATGCAT  1020

seq1  TATATGTATGTATGTATGTATGTATATATATATATGATTTAATGTATAAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTATGTATGTATGTATGTATATATATATATGATTTAATGTATAAA  1070

seq1  TCAGTCTAAATCTTCCTCATTTTACACACCTATGGATAAATTATTTCCAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTAAATCTTCCTCATTTTACACACCTATGGATAAATTATTTCCAT  1120

seq1  CTCTTTTCATCAGGTGTAGTATTTTCTTTATTTCTCAATATAGTTTTTTA  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTCATCAGGTGTAGTATTTTCTTTATTTCTCAATATAGTTTTTTA  1170

seq1  ATATTAATTTGCTAATGTAAGTTAAATCCATAGAATTC  1236
      ||||||||||||||||||||||||||||||||||||||
seq2  ATATTAATTTGCTAATGTAAGTTAAATCCATAGAATTC  1208