BAC Information

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BAC

Clone NameB6Ng01-080A02
Chromosome10 (Build37)
Map Location 22,847,116 - 23,001,270
singlet/doubletdoublet
Overlap geneEya4
Upstream geneE030030I06Rik, Ube2q2l, Raet1e, LOC100040023, LOC100038830, LOC667280, EG667281, LOC432438, Raet1d, LOC667299, LOC667303, LOC100040072, LOC100040078, Slc2a12, Tbpl1, Tcf21
Downstream geneRps12, 1110021L09Rik, Vnn3, Vnn1, Taar1, Taar2, Taar3, Taar4, Taar5, Taar6, Taar7a, Taar7b, Taar7c-ps, Taar7d, Taar7e, LOC628480, Taar7f, Taar8a, Taar8b, Taar8c, Taar9, Stx7, Moxd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080A02.bB6Ng01-080A02.g
ACCDH895261DH895262
length593446
definitionDH895261|Mus musculus domesticus DNA, BAC clone: B6Ng01-080A02, 5' end.DH895262|Mus musculus domesticus DNA, BAC clone: B6Ng01-080A02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,000,672 - 23,001,270)(22,847,116 - 22,847,567)
sequence
aatctactggtagaaaagcctgtttcccagcataaggactgaggaagagt
gtgggtggggggagctttggggagatgctgtggatggatgtgcagttttc
cactgtagagtaagactacctctcagtcactacagtgtgctgtaattccc
agcgagttgtgtaaaacgacatccagaagaaagtcccagctgtagagcct
gcaaatcctgagtggccagagacaggtgatcagtgtcaagagctgcttct
gacactttgaattaaagtgtgtggcagtaaaggatcagagcctaccggtg
gtgcctttccatttcagagacttcacgtgtgctacaactgctgctatgtg
gagatgagtaagaaaccattttttaataagcttttagctttgaaggcaga
tgtttctacctttatgatatgttttagcacggaagatacttcattctaca
tatatgaatctatacatgtagtggtacaaaatccatagcacgcatgcatg
tgtctgtctgtctgtttctctacttgtgtatgtgtgtgtctctgtgtgtg
atgcatatgtttatgtggtgtgtatgtgtgtgtttgtgtgtag
aagcccatggcactgggagggataatcacttgttttccaagctgtggtgt
ttgtacaacactcaccctactacagccagcacttattaagcattctggca
aaaatcccacttcttaactggataattttggatttgaattttgtcagagt
gtgagttggttagattttactaaggttttcagagagcaagcccattgaca
gagaggtgtttggtcatcaaggccacaagccaaggaaaactaagtcaaga
ggtgatattcttgttcctcagagacggttttgggagggcttctttacaaa
tatatgatttatccccccttccagttaactaagtcactgggacagctaat
tctaaattagcagattacagtgccacacttttccaggtgaaggactcaca
gatctcaaactctaaaagggagggatatttgttagggggtgggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_23000672_23001270
seq2: B6Ng01-080A02.b_40_638 (reverse)

seq1  CTACACACAAACACACACATACACACCACATAAACATATGCATCACACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACACAAACACACACATACACACCACATAAACATATGCATCACACAC  50

seq1  AGAGACACACACATACACAAGTAGAGAAACAGACAGACAGACACATGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACACACATACACAAGTAGAGAAACAGACAGACAGACACATGCAT  100

seq1  GCGTGCTATGGATTTTGTACCACTACATGTATAGATTCATATATGTAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCTATGGATTTTGTACCACTACATGTATAGATTCATATATGTAGAA  150

seq1  TGAAGTATCTTCCGTGCTAAAACATATCATAAAGGTAGAAACATCTGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTATCTTCCGTGCTAAAACATATCATAAAGGTAGAAACATCTGCCT  200

seq1  TCAAAGCTAAAAGCTTATTAAAAAATGGTTTCTTACTCATCTCCACATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCTAAAAGCTTATTAAAAAATGGTTTCTTACTCATCTCCACATAG  250

seq1  CAGCAGTTGTAGCACACGTGAAGTCTCTGAAATGGAAAGGCACCACCGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTTGTAGCACACGTGAAGTCTCTGAAATGGAAAGGCACCACCGGT  300

seq1  AGGCTCTGATCCTTTACTGCCACACACTTTAATTCAAAGTGTCAGAAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTGATCCTTTACTGCCACACACTTTAATTCAAAGTGTCAGAAGCA  350

seq1  GCTCTTGACACTGATCACCTGTCTCTGGCCACTCAGGATTTGCAGGCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGACACTGATCACCTGTCTCTGGCCACTCAGGATTTGCAGGCTCT  400

seq1  ACAGCTGGGACTTTCTTCTGGATGTCGTTTTACACAACTCGCTGGGAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGGGACTTTCTTCTGGATGTCGTTTTACACAACTCGCTGGGAATT  450

seq1  ACAGCACACTGTAGTGACTGAGAGGTAGTCTTACTCTACAGTGGAAAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACACTGTAGTGACTGAGAGGTAGTCTTACTCTACAGTGGAAAACT  500

seq1  GCACATCCATCCACAGCATCTCCCCAAAGCTCCCCCCACCCACACTCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATCCATCCACAGCATCTCCCCAAAGCTCCCCCCACCCACACTCTTC  550

seq1  CTCAGTCCTTATGCTGGGAAACAGGCTTTTCTACCAGTAGATTGAATTC  599
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCCTTATGCTGGGAAACAGGCTTTTCTACCAGTAGATTGAATTC  599

seq1: chr10_22847116_22847567
seq2: B6Ng01-080A02.g_66_517

seq1  GAATTCAAGCCCATGGCACTGGGAGGGATAATCACTTGTTTTCCAAGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGCCCATGGCACTGGGAGGGATAATCACTTGTTTTCCAAGCTG  50

seq1  TGGTGTTTGTACAACACTCACCCTACTACAGCCAGCACTTATTAAGCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTTGTACAACACTCACCCTACTACAGCCAGCACTTATTAAGCATT  100

seq1  CTGGCAAAAATCCCACTTCTTAACTGGATAATTTTGGATTTGAATTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAAAAATCCCACTTCTTAACTGGATAATTTTGGATTTGAATTTTGT  150

seq1  CAGAGTGTGAGTTGGTTAGATTTTACTAAGGTTTTCAGAGAGCAAGCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGTGAGTTGGTTAGATTTTACTAAGGTTTTCAGAGAGCAAGCCCA  200

seq1  TTGACAGAGAGGTGTTTGGTCATCAAGGCCACAAGCCAAGGAAAACTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGAGAGGTGTTTGGTCATCAAGGCCACAAGCCAAGGAAAACTAAG  250

seq1  TCAAGAGGTGATATTCTTGTTCCTCAGAGACGGTTTTGGGAGGGCTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAGGTGATATTCTTGTTCCTCAGAGACGGTTTTGGGAGGGCTTCTT  300

seq1  TACAAATATATGATTTATCCCCCCTTCCAGTTAACTAAGTCACTGGGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATATATGATTTATCCCCCCTTCCAGTTAACTAAGTCACTGGGACA  350

seq1  GCTAATTCTAAATTAGCAGATTACAGTGCCACACTTTTCCAGGTGAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATTCTAAATTAGCAGATTACAGTGCCACACTTTTCCAGGTGAAGGA  400

seq1  CTCACAGATCTCAAACTCTAAAAGGGAGGGATATTTGTTAGGGGGTGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGATCTCAAACTCTAAAAGGGAGGGATATTTGTTAGGGGGTGGGT  450

seq1  GG  452
      ||
seq2  GG  452