BAC Information

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BAC

Clone NameB6Ng01-080E15
Chromosome19 (Build37)10 (Build37)
Map Location 49,053,196 - 49,053,7373,985,539 - 3,986,696
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGm969, LOC670576, Sorcs3, LOC100042896
Downstream geneLOC629448, Siah1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080E15.bB6Ng01-080E15.g
ACCDH895468DH895469
length1,0091,136
definitionDH895468|Mus musculus domesticus DNA, BAC clone: B6Ng01-080E15, 5' end.DH895469|Mus musculus domesticus DNA, BAC clone: B6Ng01-080E15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(49,053,196 - 49,053,737)(3,985,539 - 3,986,696)
sequence
gaattcctcttggaagattttacctttgatgagtatgaagtgtccctcct
tgtctttttttgataactttgggttggaagttgatttcattcgatattag
aatggctactccatcttgtttcttgggatcgtttgcttggaaaattattt
tccagcttttgactctgaggtattttctgtctttttccctgagattggtt
tcctgtaagcagcaaaatgttgggtcctgtttgtgtagccagtatgttag
tctatgtctttttattggggaattgagtacattgatgttaagagatatta
aggaagagtaattgttgcttcctattatttttgttgttagagttgatatt
ctgttcttttggctttcttcttttaggtttgttgaaggattgctttcttg
ctttttctaggccatggtttccgtccttgtattttttttttctgttatta
tcctttgaagggctcaattcatggaaagatattgtttgaatatggtttta
ttatggaatactttggtttctccatctatggtaattgagagtttggctgg
gtgtagtagcctgtgctggcatttgtgttctcttattgtctgtataacat
ctgtccaggatcttctggctttcatagtctctggtgagaagcctgatgta
gttctaataagcctggttttatatgttacttgacttttttcccttactgc
ctttaatattttatctttacctagtgcatttgttgttctgattattatgt
gttaggaggaatttcttctctggtccagtctatttggagttctttatgct
tctggtattttcatgggcatctctttctttatgtttgggaagttttcttc
tataattttgttgaagatatttgctggccctttaagttgaaaatcttcat
tctcatctactcctgtatccataggtttagtcttctcatttgtcttggat
ttctggatgttttgagttaggaccttttttcatttgcattttctttgatt
gttgtgccc
gaattccctaataaactctcctgaccctgacagtggaagaggaaaaataa
aataaaaaccaaccaaacaacaataataacatttgctcataagccctcca
gttgagaaaagcctgcctttctgagtagaacaaaaactggtccaattaaa
gaaatacagggtcgccctccattgctgaggggacagagccaagaaaaaac
acatgacagcaggacagcagggctaaaacctacaacatagacctgctcca
atgctaagacacaattacaatattagtgggcagccccattttcctactct
ctgcttcctctctcaaccttaggattcctgaataatcaagatattttaga
gaaagaactatagacacaggctccctatgacaaatgatgagtgaagggcc
agaataaagagaaatcaaagcaggaacacgggcaaactgaacctcctggt
acctgaagctatagtagccagtagagtcagatcagctgctaacatagcac
ctcataccaagggaccattttccttgcctgcctcctcagtgtgagtctca
tataatattcatctcaatttcatttattgattaaatattcctttttttaa
aattaaaattagtaagggcgacagaagtatcaaagtcacagaaaccaccc
ttgttagaattataaggcaggcagtttgaaaacagatatcattaatatgg
taagaaaattgacaggaaaacttcacatgacaacgacaggaaacagcaca
aggccggagtgagcagagacagaaactctgacaaatcacgatgtgctaga
aataaacccagtgactgaaatgaaggcttttctcaaagggctggtcaatc
tgttgacgttacattgaatagaaaagacacagcaagcactgggacacatg
agtcaactaatgatgggctagattctcacacagtagagtgctagcactac
atgacagacagtcatagcagcaatgccgagggtgtgagagtgagctcact
gctgatatgtgattgacagccattctgagaacactgttggagctttctct
tataacaagcagtaagttccatgagatgtactacgtatcataatcaatga
atcagcaatgaagagaacctgttctacctatgttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_49053196_49053737
seq2: B6Ng01-080E15.b_51_592 (reverse)

seq1  CAAACTCTCAATTACCATAGATGGAGAAACCAAAGTATTCCATGACAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||| | ||||
seq2  CAAACTCTCAATTACCATAGATGGAGAAACCAAAGTATTCCATAATAAAA  50

seq1  CCAAATTCACACAATATCTTTCCACGAATCCAGCCCTTCAAAGGATAATA  100
      ||| ||||| |||||||||||||| ||||  |||||||||||||||||||
seq2  CCATATTCAAACAATATCTTTCCATGAATTGAGCCCTTCAAAGGATAATA  100

seq1  ACAGAAAAGAAGCAATACAAGGACGGAAATCATGCCCTAGAACAAACAAG  150
      |||||||| ||  |||||||||||||||| |||| ||||||| || ||||
seq2  ACAGAAAA-AAAAAATACAAGGACGGAAACCATGGCCTAGAAAAAGCAAG  149

seq1  AAAGTAATCCCTCAACAAACCAAAAAGAAGACAGCCACAAGAACAGAATG  200
      |||| ||||| |||||||||| ||||||||| ||||| ||||||||||| 
seq2  AAAGCAATCCTTCAACAAACCTAAAAGAAGAAAGCCAAAAGAACAGAATA  199

seq1  CCAACTCTAACAACAAAAATAAAAGGAAGCAACAATTACTTTTCCTTAAT  250
       ||||||||||||||||||||| ||||||||||||||||| |||||||||
seq2  TCAACTCTAACAACAAAAATAATAGGAAGCAACAATTACTCTTCCTTAAT  249

seq1  ATCTCTTAATATCAATGGACTCAATTCCCCAATAAAAAGACATAGACTAA  300
      ||||||||| ||||||| ||||||||||||||||||||||||||||||||
seq2  ATCTCTTAACATCAATGTACTCAATTCCCCAATAAAAAGACATAGACTAA  299

seq1  CAGACTGGCTACACAAACAGGACCCAACATTCTGCTGCTTACAGGAAACC  350
      || |||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CATACTGGCTACACAAACAGGACCCAACATTTTGCTGCTTACAGGAAACC  349

seq1  CATCTCAGGGAAAAAGACAGACACTACCTCAGAGTGAAAAGCTGGAAAAC  400
       |||||||||||||||||||| | ||||||||||| ||||||||||||| 
seq2  AATCTCAGGGAAAAAGACAGAAAATACCTCAGAGTCAAAAGCTGGAAAAT  399

seq1  AATTTTCCAAGCAAATGGTCTGAAGAAACAAGCTGGAGTAGCCATTCTAA  450
      ||||||||||||||| | ||  |||||||||| |||||||||||||||||
seq2  AATTTTCCAAGCAAACGATCCCAAGAAACAAGATGGAGTAGCCATTCTAA  449

seq1  TATCGGATAAAATCGACTTCCAACCCAAAGTTATC-AAGAAAGACAAGGA  499
      ||||| || ||||| |||||||||||||||||||| || |||||||||||
seq2  TATCGAATGAAATCAACTTCCAACCCAAAGTTATCAAAAAAAGACAAGGA  499

seq1  GGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAA  542
      ||||||||||||||||||||||||||||||| |||||||||||
seq2  GGGACACTTCATACTCATCAAAGGTAAAATCTTCCAAGAGGAA  542

seq1: chr10_3985539_3986696
seq2: B6Ng01-080E15.g_67_1202

seq1  GAATTCCCTAATAAACTCTCCTGACCCTGACAGTGGAAGAGGAAAAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTAATAAACTCTCCTGACCCTGACAGTGGAAGAGGAAAAATAA  50

seq1  AATAAAAACCAACCAAACAACAATAATAACATTTGCTCATAAGCCCTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAACCAACCAAACAACAATAATAACATTTGCTCATAAGCCCTCCA  100

seq1  GTTGAGAAAAGCCTGCCTTTCTGAGTAGAACAAAAACTGGTCCAATTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGAAAAGCCTGCCTTTCTGAGTAGAACAAAAACTGGTCCAATTAAA  150

seq1  GAAATACAGGGTCGCCCTCCATTGCTGAGGGGACAGAGCCAAGAAAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACAGGGTCGCCCTCCATTGCTGAGGGGACAGAGCCAAGAAAAAAC  200

seq1  ACATGACAGCAGGACAGCAGGGCTAAAACCTACAACATAGACCTGCTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACAGCAGGACAGCAGGGCTAAAACCTACAACATAGACCTGCTCCA  250

seq1  ATGCTAAGACACAATTACAATATTAGTGGGCAGCCCCATTTTCCTACTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAAGACACAATTACAATATTAGTGGGCAGCCCCATTTTCCTACTCT  300

seq1  CTGCTTCCTCTCTCAACCTTAGGATTCCTGAATAATCAAGATATTTTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCCTCTCTCAACCTTAGGATTCCTGAATAATCAAGATATTTTAGA  350

seq1  GAAAGAACTATAGACACAGGCTCCCTATGACAAATGATGAGTGAAGGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAACTATAGACACAGGCTCCCTATGACAAATGATGAGTGAAGGGCC  400

seq1  AGAATAAAGAGAAATCAAAGCAGGAACACGGGCAAACTGAACCTCCTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAAGAGAAATCAAAGCAGGAACACGGGCAAACTGAACCTCCTGGT  450

seq1  ACCTGAAGCTATAGTAGCCAGTAGAGTCAGATCAGCTGCTAACATAGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAAGCTATAGTAGCCAGTAGAGTCAGATCAGCTGCTAACATAGCAC  500

seq1  CTCATACCAAGGGACCATTTTCCTTGCCTGCCTCCTCAGTGTGAGTCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATACCAAGGGACCATTTTCCTTGCCTGCCTCCTCAGTGTGAGTCTCA  550

seq1  TATAATATTCATCTCAATTTCATTTATTGATTAAATATTCCTTTTTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATATTCATCTCAATTTCATTTATTGATTAAATATTCCTTTTTTTAA  600

seq1  AATTAAAATTAGTAAGGGCGACAGAAGTATCAAAGTCACAGAAACCACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAATTAGTAAGGGCGACAGAAGTATCAAAGTCACAGAAACCACCC  650

seq1  TTGTTAGAATTATAAGGCAGGCAGTTTGAAAACAGATATCATTAATATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGAATTATAAGGCAGGCAGTTTGAAAACAGATATCATTAATATGG  700

seq1  TAAGAAAATTGACAGGAAAACTTCACATGACAACGACAGGAAACAGCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAATTGACAGGAAAACTTCACATGACAACGACAGGAAACAGCACA  750

seq1  AGGCCGGAGTGAGCAGAGACAGAAACTCTGACAAATCACGATGTGCTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCGGAGTGAGCAGAGACAGAAACTCTGACAAATCACGATGTGCTAGA  800

seq1  AATAAACCCAGTGACTGAAATGAAGGCTTTTCTCAAAGGGCTGGTCAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACCCAGTGACTGAAATGAAGGCTTTTCTCAAAGGGCTGGTCAATC  850

seq1  TGTTGACGTTACATTGAATAGAAAAGACACAGCAAGCACTGGGACACATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGACGTTACATTGAATAGAAAAGACACAGCAAGCACTGGGACACATG  900

seq1  AGTCAAACTAATGATGGGCTAGATTCTCACCACAGGTAGAGTGGCTAGCA  950
      |||| |||||||||||||||||||||||| |||| ||||||| |||||||
seq2  AGTC-AACTAATGATGGGCTAGATTCTCA-CACA-GTAGAGT-GCTAGCA  946

seq1  CTACAATGACAGACAGTCATAGCAGCAAATGCCGAGGGTGTGGAAGAGTG  1000
      |||| ||||||||||||||||||||| |||||||||||||||  ||||||
seq2  CTAC-ATGACAGACAGTCATAGCAGC-AATGCCGAGGGTGTG--AGAGTG  992

seq1  AGCTCACTGCTGATAATGTGAATTGACAGCCATTCTGGAGAACACTG-TG  1049
      |||||||||||||| ||||| ||||||||||||||| |||||||||| ||
seq2  AGCTCACTGCTGAT-ATGTG-ATTGACAGCCATTCT-GAGAACACTGTTG  1039

seq1  GAGCTTCTCCTAATAAACAAGCAGGTAAGTCTCATGAGATGGTTACCTAC  1099
      ||||||   || || |||||||| ||||||  |||||||||  || ||||
seq2  GAGCTTTCTCTTAT-AACAAGCA-GTAAGTTCCATGAGATG--TA-CTAC  1084

seq1  GTATCATAAATCAAATGAAATCAGCATATGAAAGAGACACCTGTACTAAC  1149
      ||||||| |||| |||| |||||||| ||| |||||| |||||| || ||
seq2  GTATCAT-AATC-AATG-AATCAGCA-ATG-AAGAGA-ACCTGTTCT-AC  1127

seq1  CTATGTTAT  1158
      |||||||||
seq2  CTATGTTAT  1136