BAC Information

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BAC

Clone NameB6Ng01-080H05
Chromosome10 (Build37)
Map Location 116,101,789 - 116,270,173
singlet/doubletdoublet
Overlap geneEG668091, Gm239
Upstream geneEG668073, Tspan8, Ptprr, 4933416C03Rik, Ptprb, Kcnmb4, Cnot2, LOC668080
Downstream geneRab3ip, D630029K05Rik, LOC544741, Best3, Lrrc10, Cct2, Frs2, Yeats4, 9530003J23Rik, Lyzs, Lyz, Cpsf6, LOC668146, LOC668149, Kifc5c, Cpm, Mdm2, Slc35e3, Nup107, Rap1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080H05.bB6Ng01-080H05.g
ACCDH895585DH895586
length1,204900
definitionDH895585|Mus musculus domesticus DNA, BAC clone: B6Ng01-080H05, 5' end.DH895586|Mus musculus domesticus DNA, BAC clone: B6Ng01-080H05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,268,952 - 116,270,173)(116,101,789 - 116,102,688)
sequence
gaattcagaccttccatggagcctagcatggtaccctggcaaaggtttta
agcgtctgaacattttctactaatggatactattttagtatgttaattaa
tctattaagtaattgttttacttttgttttgttttgtttacccatacagg
tggaagccaccaaccaagtgattgccatagaacagtctcaagcagataga
agcaaaaagacttttgatcctgttaagtaaggtgttcttttctgagtgtc
atcgtgaagtttagggaagaagagtgatattatttctttttcttttttgc
tacttaattagcattttggttttttttaaatcaatcattttatttgttta
catttcgaatgttatcccccttctgggttacccctccacacacccctccc
atcccatcctccctcccctttgcctctatgagggtgctcctccacccact
cacccactcccgcctcaccgctccagcatccccctatgctggggcatcaa
aacgccacaggacgaagggcctcccctcccattgatgtcatataagccat
cctctgctacataggcagctggagccatgggtccctccatgtatacagga
tgccagtattataaacacctgttatgaaaaggtccccctggaaattcacc
actcttcttaggcgctttgatagcggatggacttacgaacaacttgattc
cttgagacagaacatggctagatattttaatttttaatttagattagtgc
cattttggttgagttgactttgaggtttcctttctctgcacgcatacagc
tcatttctccgtgtattgtatggttaccttgacagacgccgggctgaaag
ctgacgctcgtggtaatattcacagcagtagtgaagtaaagaatgagagt
cctctctctagaatggcatgaggtgggaactgtgtcttggtttatttggc
caggatacagatggggtagcttaggctaactgcagctgagcccatttggg
gcagatggtccttcagcctagaaagagcccctcccccaactgctggtgga
gttcaggttctcgagcagcatgtgacttggtgcatggggctcctccttgc
tgggcaggctaatggctttcatgaagatgctgttttctgtggctagctat
ggagtcccctatgtggaagaaagccgagttcagagaaaagatgatttgtg
agga
gaattcttcccctggagttacatagcaaagtcatccctgtccttataagg
tgtcaatgacagaccaaactacagtaccctgggggaaacagtgagtttat
tgggctttcttacagagcatgggcaaggagttactggcaggagcatgggt
tacctcaaaacagtagcactggaaagttttcacccaggctagaggaaaag
cggctcttcagttactcttccccccttccaacagccctggagacctcaag
actccaaggccatgtgcgatcagtgcaaattatatacacgtggctgggag
gagagactggaatcttaggaagagtccaatggcccttgttaccctcttct
tctgtatgggaatatgtcaacagtcaccaaggccacttctgatggcctca
agccatcaggcacaggtgatctgatggagatgtaggctgtcttgctcaga
ggaccaccatctagaacagtatcttcttccttcccgcatctgtaagttac
acaaccatccctgatattcacgtgtattgttctgcctcctctgtctcacc
tgaccagtgcactggtaactgtcttggcaggaaggagctaaattaggtca
gacacaagttacaagtgtgtctgccagtataaataaggttctcatgggaa
ggatgcctagtcacaggtaggacatgtaggcactagcccatgtaccagaa
taaaaaccatcccatgaagaaggcacactgtaaccaccatgactacctgc
cctgggggcctgtcagaacagggcttagactaggaccaatttccctgagc
tagacctcaagagcagatcagaagaattttatggagcatgttgactgcat
attgtaagaatgctgtttgtgtctgtaggtcgtttgaaacctgttgacct

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_116268952_116270173
seq2: B6Ng01-080H05.b_50_1253 (reverse)

seq1  TCCTCACAAATCACTTCTTTTCTTCCTGAACACTCTGGCTTTTTCTTCAC  50
      |||||||||||||  ||||||||  |||||| |   |||||| | | |||
seq2  TCCTCACAAATCA--TCTTTTCT--CTGAACTC---GGCTTTCT-TCCAC  42

seq1  ATAGGTGACCTCCCATAGCCTAGCCACAGGAAACAGCATCTTTCCATGAA  100
      ||||| |||   |||||| |||||||||| ||||||||||||  |||| |
seq2  ATAGGGGAC--TCCATAG-CTAGCCACAGAAAACAGCATCTT--CATG-A  86

seq1  AAGCCATGTAGCCTGCCCAAGCAAGGGAGAGCCCCATGCACCAAGTCACA  150
      ||||||| |||||||||| |||||||  ||||||||||||||||||||||
seq2  AAGCCAT-TAGCCTGCCC-AGCAAGGAGGAGCCCCATGCACCAAGTCACA  134

seq1  TGCTTGCTCGAGAACCTGAACTCCA-CAGCAGTTTGTGTGAGTGGCTCTG  199
      ||| ||||||||||||||||||||| |||||| ||| | ||| |||||| 
seq2  TGC-TGCTCGAGAACCTGAACTCCACCAGCAG-TTGGGGGAGGGGCTCTT  182

seq1  TCTAGGCTGAAGGACCATCCTGCCCCAAATGGGCTCAGCTGCAGTTAGCC  249
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCTAGGCTGAAGGACCAT-CTGCCCCAAATGGGCTCAGCTGCAGTTAGCC  231

seq1  TAAGCTACCCCATCTGTATCCTGGCCAAATAAACCAAGACACAGTTCCCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTACCCCATCTGTATCCTGGCCAAATAAACCAAGACACAGTTCCCA  281

seq1  CCTCATGCCATTCTAGAGAGAGGACTCTCATTCTTTACTTCACTACTGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGCCATTCTAGAGAGAGGACTCTCATTCTTTACTTCACTACTGCT  331

seq1  GTGAATATTACCACGAGCGTCAGCTTTCAGCCCGGCGTCTGTCAAGGTAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATATTACCACGAGCGTCAGCTTTCAGCCCGGCGTCTGTCAAGGTAA  381

seq1  CCATACAATACACGGAGAAATGAGCTGTATGCGTGCAGAGAAAGGAAACC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACAATACACGGAGAAATGAGCTGTATGCGTGCAGAGAAAGGAAACC  431

seq1  TCAAAGTCAACTCAACCAAAATGGCACTAATCTAAATTAAAAATTAAAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTCAACTCAACCAAAATGGCACTAATCTAAATTAAAAATTAAAAT  481

seq1  ATCTAGCCATGTTCTGTCTCAAGGAATCAAGTTGTTCGTAAGTCCATCCG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGCCATGTTCTGTCTCAAGGAATCAAGTTGTTCGTAAGTCCATCCG  531

seq1  CTATCAAAGCGCCTAAGAAGAGTGGTGAATTTCCAGGGGGACCTTTTCAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAAAGCGCCTAAGAAGAGTGGTGAATTTCCAGGGGGACCTTTTCAT  581

seq1  AACAGGTGTTTATAATACTGGCATCCTGTATACATGGAGGGACCCATGGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGTGTTTATAATACTGGCATCCTGTATACATGGAGGGACCCATGGC  631

seq1  TCCAGCTGCCTATGTAGCAGAGGATGGCTTATATGACATCAATGGGAGGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTGCCTATGTAGCAGAGGATGGCTTATATGACATCAATGGGAGGG  681

seq1  GAGGCCCTTCGTCCTGTGGCGTTTTGATGCCCCAGCATAGGGGGATGCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCCTTCGTCCTGTGGCGTTTTGATGCCCCAGCATAGGGGGATGCTG  731

seq1  GAGCGGTGAGGCGGGAGTGGGTGAGTGGGTGGAGGAGCACCCTCATAGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGGTGAGGCGGGAGTGGGTGAGTGGGTGGAGGAGCACCCTCATAGAG  781

seq1  GCAAAGGGGAGGGAGGATGGGATGGGAGGGGTGTGTGGAGGGGTAACCCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGGGAGGGAGGATGGGATGGGAGGGGTGTGTGGAGGGGTAACCCA  831

seq1  GAAGGGGGATAACATTCGAAATGTAAACAAATAAAATGATTGATTTAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGGATAACATTCGAAATGTAAACAAATAAAATGATTGATTTAAAA  881

seq1  AAAACCAAAATGCTAATTAAGTAGCAAAAAAGAAAAAGAAATAATATCAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAAATGCTAATTAAGTAGCAAAAAAGAAAAAGAAATAATATCAC  931

seq1  TCTTCTTCCCTAAACTTCACGATGACACTCAGAAAAGAACACCTTACTTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCCCTAAACTTCACGATGACACTCAGAAAAGAACACCTTACTTA  981

seq1  ACAGGATCAAAAGTCTTTTTGCTTCTATCTGCTTGAGACTGTTCTATGGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATCAAAAGTCTTTTTGCTTCTATCTGCTTGAGACTGTTCTATGGC  1031

seq1  AATCACTTGGTTGGTGGCTTCCACCTGTATGGGTAAACAAAACAAAACAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTTGGTTGGTGGCTTCCACCTGTATGGGTAAACAAAACAAAACAA  1081

seq1  AAGTAAAACAATTACTTAATAGATTAATTAACATACTAAAATAGTATCCA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAACAATTACTTAATAGATTAATTAACATACTAAAATAGTATCCA  1131

seq1  TTAGTAGAAAATGTTCAGACGCTTAAAACCTTTGCCAGGGTACCATGCTA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAGAAAATGTTCAGACGCTTAAAACCTTTGCCAGGGTACCATGCTA  1181

seq1  GGCTCCATGGAAGGTCTGAATTC  1222
      |||||||||||||||||||||||
seq2  GGCTCCATGGAAGGTCTGAATTC  1204

seq1: chr10_116101789_116102688
seq2: B6Ng01-080H05.g_72_971

seq1  GAATTCTTCCCCTGGAGTTACATAGCAAAGTCATCCCTGTCCTTATAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCCTGGAGTTACATAGCAAAGTCATCCCTGTCCTTATAAGG  50

seq1  TGTCAATGACAGACCAAACTACAGTACCCTGGGGGAAACAGTGAGTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAATGACAGACCAAACTACAGTACCCTGGGGGAAACAGTGAGTTTAT  100

seq1  TGGGCTTTCTTACAGAGCATGGGCAAGGAGTTACTGGCAGGAGCATGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTTCTTACAGAGCATGGGCAAGGAGTTACTGGCAGGAGCATGGGT  150

seq1  TACCTCAAAACAGTAGCACTGGAAAGTTTTCACCCAGGCTAGAGGAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCAAAACAGTAGCACTGGAAAGTTTTCACCCAGGCTAGAGGAAAAG  200

seq1  CGGCTCTTCAGTTACTCTTCCCCCCTTCCAACAGCCCTGGAGACCTCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTCTTCAGTTACTCTTCCCCCCTTCCAACAGCCCTGGAGACCTCAAG  250

seq1  ACTCCAAGGCCATGTGCGATCAGTGCAAATTATATACACGTGGCTGGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAAGGCCATGTGCGATCAGTGCAAATTATATACACGTGGCTGGGAG  300

seq1  GAGAGACTGGAATCTTAGGAAGAGTCCAATGGCCCTTGTTACCCTCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACTGGAATCTTAGGAAGAGTCCAATGGCCCTTGTTACCCTCTTCT  350

seq1  TCTGTATGGGAATATGTCAACAGTCACCAAGGCCACTTCTGATGGCCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATGGGAATATGTCAACAGTCACCAAGGCCACTTCTGATGGCCTCA  400

seq1  AGCCATCAGGCACAGGTGATCTGATGGAGATGTAGGCTGTCTTGCTCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCAGGCACAGGTGATCTGATGGAGATGTAGGCTGTCTTGCTCAGA  450

seq1  GGACCACCATCTAGAACAGTATCTTCTTCCTTCCCGCATCTGTAAGTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCACCATCTAGAACAGTATCTTCTTCCTTCCCGCATCTGTAAGTTAC  500

seq1  ACAACCATCCCTGATATTCACGTGTATTGTTCTGCCTCCTCTGTCTCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCATCCCTGATATTCACGTGTATTGTTCTGCCTCCTCTGTCTCACC  550

seq1  TGACCAGTGCACTGGTAACTGTCTTGGCAGGAAGGAGCTAAATTAGGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGTGCACTGGTAACTGTCTTGGCAGGAAGGAGCTAAATTAGGTCA  600

seq1  GACACAAGTTACAAGTGTGTCTGCCAGTATAAATAAGGTTCTCATGGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAAGTTACAAGTGTGTCTGCCAGTATAAATAAGGTTCTCATGGGAA  650

seq1  GGATGCCTAGTCACAGGTAGGACATGTAGGCACTAGCCCATGTACCAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCCTAGTCACAGGTAGGACATGTAGGCACTAGCCCATGTACCAGAA  700

seq1  TAAAAACCATCCCATGAAGAAGGCACACTGTAACCACCATGACTACCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACCATCCCATGAAGAAGGCACACTGTAACCACCATGACTACCTGC  750

seq1  CCTGGGGGCCTGTCAGAACAGGGCTAAGACTAGGACC-ACTTCCCAGAGC  799
      ||||||||||||||||||||||||| ||||||||||| | ||||| ||||
seq2  CCTGGGGGCCTGTCAGAACAGGGCTTAGACTAGGACCAATTTCCCTGAGC  800

seq1  TAGACCTCAAGAGCAGATCAGAAAGAATTTATGGAGCATGTTAGCTGCAA  849
      |||||||||||||||||||||||  | |||||||||||||||  ||||| 
seq2  TAGACCTCAAGAGCAGATCAGAAGAATTTTATGGAGCATGTTGACTGCAT  850

seq1  TATGTAAGAATGCTGTTTGTGTCTGTAGGTCGTTTGAAAACCTGTTGACC  899
        |||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATTGTAAGAATGCTGTTTGTGTCTGTAGGTCGTTTG-AAACCTGTTGACC  899

seq1  T  900
      |
seq2  T  900