BAC Information

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BAC

Clone NameB6Ng01-080K17
Chromosome10 (Build37)
Map Location 89,877,016 - 90,063,920
singlet/doubletdoublet
Overlap geneAnks1b
Upstream geneGas2l3, Nr1h4, EG627532, Slc17a8, Scyl2, Actr6, E030041M21Rik, E530015N03Rik, LOC100043039, LOC544719
Downstream geneApaf1, 1200009F10Rik, Slc25a3, Tmpo, LOC100041769
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080K17.bB6Ng01-080K17.g
ACCDH895741DH895742
length1,1171,130
definitionDH895741|Mus musculus domesticus DNA, BAC clone: B6Ng01-080K17, 5' end.DH895742|Mus musculus domesticus DNA, BAC clone: B6Ng01-080K17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,877,016 - 89,878,141)(90,062,783 - 90,063,920)
sequence
gaattctttgtttacacacacacacacacacacacacacacacacacaca
cacacacacatattatggcaaaatcctattttatcaggccagaagttcac
ttagtacagtgtttacattgcaagcaaagaacctggctctaatttgcaga
actccaagttaaaacaaaacaacaaacaaaaaaaaaaaaaccaaaacaac
agctgccaaggaccagcctctgcttagttgggggtcctgaggaaggggta
ttgcaagtagtgaaagaaatgactcaaagtcaaatgattgggtgcaagct
gacagccgtgtagtctgcttgaaatgactccctaaacagctctctgtaga
tagctcttggctctgcagtctatttgagataactttctgctgtttcatgc
tagaaaaatttctaaaaactctccggatagctcatgggttttctgaccaa
agtcagaaaagctgctataaaatattcttagattttctagaaaaattcta
ttaaagctatgctcattttccaagaagttccctctaggtagctgctagaa
aatattctaaaagagctatgttagctctctaagtaatttttagtatttct
gaccaaggtcagaaatcctgttagaaaacaaatttttaaaagaacaatat
attcattctccagagatctctagacagctcagcatttactagaaaaaaat
tctaaaaaataatttctgtcactctctactatctcatctcatgcagacca
aaagcccagtcttttatttgtatatcaattcagtcatgtaccccaagttc
tgttttgattatcccatgattgccatttcatgacctcagcccggtgattc
ttagaaaaagacagcaagtacattttgttttaacatggcaaatgaattca
gagatctgtctgcttttgtaaggacaacaataacttagctgggtggaatc
ctgtcctgagattaccattatgaccatgcttgaacctaaagtcactcttg
tccaggctgacctaaaccccaggatctgcctgccttgtatctttctgaca
agctgcctccatagtgcagctgcatttgttctttaggttcatggagcctt
caaaatcctattgcacc
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccattccgttggaaggtc
aaatctaagtggatcaaggaactccacataaaaccagagacactgaaact
tatagaggagaaagtggggaaaagccttgaagatatgggcacaggggaaa
aattcctgaacagaacagcaatggcttgtgctgtaagatcgagaattgac
aaatgggacctaataaaactccaaagtttctgcaaggcaaaagacactgt
caataagacaaaaagaccaccgtaaaagcttctatgagtgaaccatctgt
tgaaaactgaaagtgagcagcatttatatagaaactctcagtccttcaac
gggctggcggaatggcctcatcctcgtcacttaacttctcggtatcagtt
ttttcatcaatcgaatgtgcataattcttccctctctcttgggactaatt
agaatctacatactgcaatgattgcaaaaatgtctacttcaaagtctaat
attctataaatagcatgcgtctggccatagaaagacacagtatccttagt
gtctgtttgggcttcatggttggtgaaattaggacacaggaccacgaatg
agttgcccaagactctgagtcagacttccaggcagtgcagaaggaagcgt
tcatttgagttctcattacttcctgttgggatgcagttatgcccatgtag
aattgaggtggagaccttagtcacactgacagctaatctgaacctgtttg
aatggctccaggaattccagtcattaaacagaaactggcttgctcatctg
tacattcctctcaagtcagttgaaataaatccccagcacttgatttctga
cccgggttctcagcttatcaacaccagcccatggttctggcattatgaga
aattttccagtctgttggggtggaaggtaatccatctgccaccggtggag
ggaaacgtgtatagaagacagaatcaggagactaagggttctggaaacct
cggaagcaaattgtagtagcagttcgatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_89877016_89878141
seq2: B6Ng01-080K17.b_47_1163

seq1  GAATTCTTTGTTTACACACACACACACACACACACACACACACACACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTACACACACACACACACACACACACACACACACACACA  50

seq1  CACACACACATATTATGGCAAAATCCTATTTTATCAGGCCAGAAGTTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACATATTATGGCAAAATCCTATTTTATCAGGCCAGAAGTTCAC  100

seq1  TTAGTACAGTGTTTACATTGCAAGCAAAGAACCTGGCTCTAATTTGCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTACAGTGTTTACATTGCAAGCAAAGAACCTGGCTCTAATTTGCAGA  150

seq1  ACTCCAAGTTAAAACAAAACAACAAACAAAAAAAAAAAAACCAAAACAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAAGTTAAAACAAAACAACAAACAAAAAAAAAAAAACCAAAACAAC  200

seq1  AGCTGCCAAGGACCAGCCTCTGCTTAGTTGGGGGTCCTGAGGAAGGGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCAAGGACCAGCCTCTGCTTAGTTGGGGGTCCTGAGGAAGGGGTA  250

seq1  TTGCAAGTAGTGAAAGAAATGACTCAAAGTCAAATGATTGGGTGCAAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGTAGTGAAAGAAATGACTCAAAGTCAAATGATTGGGTGCAAGCT  300

seq1  GACAGCCGTGTAGTCTGCTTGAAATGACTCCCTAAACAGCTCTCTGTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCGTGTAGTCTGCTTGAAATGACTCCCTAAACAGCTCTCTGTAGA  350

seq1  TAGCTCTTGGCTCTGCAGTCTATTTGAGATAACTTTCTGCTGTTTCATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTTGGCTCTGCAGTCTATTTGAGATAACTTTCTGCTGTTTCATGC  400

seq1  TAGAAAAATTTCTAAAAACTCTCCGGATAGCTCATGGGTTTTCTGACCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAATTTCTAAAAACTCTCCGGATAGCTCATGGGTTTTCTGACCAA  450

seq1  AGTCAGAAAAGCTGCTATAAAATATTCTTAGATTTTCTAGAAAAATTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAAAAGCTGCTATAAAATATTCTTAGATTTTCTAGAAAAATTCTA  500

seq1  TTAAAGCTATGCTCATTTTCCAAGAAGTTCCCTCTAGGTAGCTGCTAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGCTATGCTCATTTTCCAAGAAGTTCCCTCTAGGTAGCTGCTAGAA  550

seq1  AATATTCTAAAAGAGCTATGTTAGCTCTCTAAGTAATTTTTAGTATTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCTAAAAGAGCTATGTTAGCTCTCTAAGTAATTTTTAGTATTTCT  600

seq1  GACCAAGGTCAGAAATCCTGTTAGAAAACAAATTTTTAAAAGAACAATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGGTCAGAAATCCTGTTAGAAAACAAATTTTTAAAAGAACAATAT  650

seq1  ATTCATTCTCCAGAGATCTCTAGACAGCTCAGCATTTACTAGAAAAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTCTCCAGAGATCTCTAGACAGCTCAGCATTTACTAGAAAAAAAT  700

seq1  TCTAAAAAATAATTTCTGTCACTCTCTACTATCTCATCTCATGCAGACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAAATAATTTCTGTCACTCTCTACTATCTCATCTCATGCAGACCA  750

seq1  AAAGCCCAGTCTTTTATTTGTATATCAATTCAGTCATGTACCCCAAGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCAGTCTTTTATTTGTATATCAATTCAGTCATGTACCCCAAGTTC  800

seq1  TGTTTTGATTATCCCATGATTGCCATTTCATGACCTCAGCCCGGTGATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGATTATCCCATGATTGCCATTTCATGACCTCAGCCCGGTGATTC  850

seq1  TTAGAAAAAGACAGCAAGTACATTTTGTTTTTAACATGGCAAATGAATTC  900
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTAGAAAAAGACAGCAAGTACATTTTG-TTTTAACATGGCAAATGAATTC  899

seq1  AGAGATCTGTCTGCTTTTGTAAGGACAAACAATAAACTTAGCTGGGTGGA  950
      |||||||||||||||||||||||||| |||||| ||||||||||||||||
seq2  AGAGATCTGTCTGCTTTTGTAAGGAC-AACAAT-AACTTAGCTGGGTGGA  947

seq1  ATCCTGTCCTGAGATTACCATTATGACCATGCTTGAACCTAAAGTCACTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTCCTGAGATTACCATTATGACCATGCTTGAACCTAAAGTCACTC  997

seq1  TGTCCCAGGCTGACCTTAAACTCAGGAATCTGCCTGCCTTTGTATCTTTC  1050
      |   |||||||||||| || | |||| ||||||||||| |||||||||||
seq2  TTGTCCAGGCTGACCTAAACCCCAGG-ATCTGCCTGCC-TTGTATCTTTC  1045

seq1  TGACAAGCTGCCT-CATAGTGCAGCTGCATCTGTTCTTTTAGGTTCATGA  1099
      ||||||||||||| |||||||||||||||| ||||| |||||||||||| 
seq2  TGACAAGCTGCCTCCATAGTGCAGCTGCATTTGTTC-TTTAGGTTCATGG  1094

seq1  AGCCTTTCATAAAATCCATATTGCACC  1126
      ||||||    ||||||| |||||||||
seq2  AGCCTT---CAAAATCC-TATTGCACC  1117

seq1: chr10_90062783_90063920
seq2: B6Ng01-080K17.g_70_1199 (reverse)

seq1  CTATCGAAACTTGCTACTACCAAATTCTGCTTCTCCGAGGTCT-CAGAAC  49
      ||||||||   |||||||||  |||| ||||  |||||||| | ||||||
seq2  CTATCGAA--CTGCTACTAC--AATT-TGCT--TCCGAGGTTTCCAGAAC  43

seq1  CTTTCCAGTCTCCTTGGATTCTGTC-TCTATACACGGTTTCCCTCCA-CG  97
      | ||  ||||||||  ||||||||| ||||||||| ||||||||||| ||
seq2  CCTT--AGTCTCCT--GATTCTGTCTTCTATACAC-GTTTCCCTCCACCG  88

seq1  GTGGCAGGATTGGATTA-CTTCCA-CCCAACAGACTGGAAAATTTCTCAT  145
      |||||||   ||||||| |||||| |||||||||||||||||||||||||
seq2  GTGGCAG--ATGGATTACCTTCCACCCCAACAGACTGGAAAATTTCTCAT  136

seq1  AATGCCAG-ACCATGGGCTGGTGTTGAATAGCTGAGAA-CCGGGTCAGAA  193
      |||||||| ||||||||||||||||||  ||||||||| ||||||||| |
seq2  AATGCCAGAACCATGGGCTGGTGTTGATAAGCTGAGAACCCGGGTCAG-A  185

seq1  AATCAAGTGCTGGGGATTTATTTCAACTGACTTGAGAGGAATGTACAGAT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGTGCTGGGGATTTATTTCAACTGACTTGAGAGGAATGTACAGAT  235

seq1  GAGCAAGCCAGTTTCTGTTTAATGACTGGAATTCCTGGAGCCATTCAAAC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAGCCAGTTTCTGTTTAATGACTGGAATTCCTGGAGCCATTCAAAC  285

seq1  AGGTTCAGATTAGCTGTCAGTGTGACTAAGGTCTCCACCTCAATTCTACA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCAGATTAGCTGTCAGTGTGACTAAGGTCTCCACCTCAATTCTACA  335

seq1  TGGGCATAACTGCATCCCAACAGGAAGTAATGAGAACTCAAATGAACGCT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATAACTGCATCCCAACAGGAAGTAATGAGAACTCAAATGAACGCT  385

seq1  TCCTTCTGCACTGCCTGGAAGTCTGACTCAGAGTCTTGGGCAACTCATTC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTGCACTGCCTGGAAGTCTGACTCAGAGTCTTGGGCAACTCATTC  435

seq1  GTGGTCCTGTGTCCTAATTTCACCAACCATGAAGCCCAAACAGACACTAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCCTGTGTCCTAATTTCACCAACCATGAAGCCCAAACAGACACTAA  485

seq1  GGATACTGTGTCTTTCTATGGCCAGACGCATGCTATTTATAGAATATTAG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACTGTGTCTTTCTATGGCCAGACGCATGCTATTTATAGAATATTAG  535

seq1  ACTTTGAAGTAGACATTTTTGCAATCATTGCAGTATGTAGATTCTAATTA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAAGTAGACATTTTTGCAATCATTGCAGTATGTAGATTCTAATTA  585

seq1  GTCCCAAGAGAGAGGGAAGAATTATGCACATTCGATTGATGAAAAAACTG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAAGAGAGAGGGAAGAATTATGCACATTCGATTGATGAAAAAACTG  635

seq1  ATACCGAGAAGTTAAGTGACGAGGATGAGGCCATTCCGCCAGCCCGTTGA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCGAGAAGTTAAGTGACGAGGATGAGGCCATTCCGCCAGCCCGTTGA  685

seq1  AGGACTGAGAGTTTCTATATAAATGCTGCTCACTTTCAGTTTTCAACAGA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGAGAGTTTCTATATAAATGCTGCTCACTTTCAGTTTTCAACAGA  735

seq1  TGGTTCACTCATAGAAGCTTTTACGGTGGTCTTTTTGTCTTATTGACAGT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCACTCATAGAAGCTTTTACGGTGGTCTTTTTGTCTTATTGACAGT  785

seq1  GTCTTTTGCCTTGCAGAAACTTTGGAGTTTTATTAGGTCCCATTTGTCAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTGCCTTGCAGAAACTTTGGAGTTTTATTAGGTCCCATTTGTCAA  835

seq1  TTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAATTTTTCC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAATTTTTCC  885

seq1  CCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTT  935

seq1  CAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCCACTTAGATTTGACCT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCCACTTAGATTTGACCT  985

seq1  TCCAACGGAATGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGAC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACGGAATGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGAC  1035

seq1  TAATATCCAACATATATAAAGAACTCAAGAAGGTGGACCTCAGAAAATCA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCCAACATATATAAAGAACTCAAGAAGGTGGACCTCAGAAAATCA  1085

seq1  AATAACCCCCTTAAAAAATGGGGCTCAGAACTGAACAAAGAATTC  1138
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCCCCTTAAAAAATGGGGCTCAGAACTGAACAAAGAATTC  1130