BAC Information

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BAC

Clone NameB6Ng01-080M11
Chromosome10 (Build37)16 (Build37)
Map Location 106,848,656 - 106,849,73060,775,922 - 60,776,478
singlet/doubletsingletsinglet
Overlap geneLin7a
Upstream genePpfia2, Olfr1556-ps1, 8430416H19Rik
Downstream geneMyf5, Myf6, Ptprq, EG628870, Ppp1r12a, Pawr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080M11.bB6Ng01-080M11.g
ACCDH895818DH895819
length1,068902
definitionDH895818|Mus musculus domesticus DNA, BAC clone: B6Ng01-080M11, 5' end.DH895819|Mus musculus domesticus DNA, BAC clone: B6Ng01-080M11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(106,848,656 - 106,849,730)(60,775,922 - 60,776,478)
sequence
gaattccaacccttcagtgtctcacgctgtgttaactgtttgctttgcca
tcgcactcttcatgtgcaacaacttcttaatccactgcatctttctaatc
taaagtagccaggaatagcaccatagagtagcgcagtttgtatactccgt
gaaagtgacgactagctaaggggatgagtggggactagaatcaccttgcc
attcatgtatagatctggcaaaaaaaaaatagcattatcatagtttataa
acaggcatcctggagttagcaggtacctctcccatagcattatattttcc
aaaattatcttccatatgcggagactgtagctgaatgactcatggaaaca
ggacaacctgtttactttttcgaatatcatcatctttctttcggttaatt
gtccttgggtgtttactatgcttggcaattttatgttggctgactagggc
gaccgttaggatgtcaggagcgtgtacacggggaggaggagggtgagtct
cacctatgacatgtggttttgttgtggttgttgttgctgctgctgttgct
gctgctgaatgagcaactgctgctgctgtcgacgccgagctgtccgcagc
ttctcgaaacgagcctccatctcttccaggacttttggggtgtatctgac
caccagcttcacactgtccttagcagccttgagaagttccacagctttct
catggtgctccccttccacactctgagaagacatggagagagttcactca
tttgtttcctccagggactaatctaggattgttatcctagtaaaaaccca
aacctctgacgcttttgtccataaattccaatacttataagactgaaata
ggagagtggctgagagttcgaagtcagcctggggtgcactgtaggcttca
gtcagcctaacatacgatgtgaaactgtatttaaaaaaaaagtcaaaatc
aagggtctggtgttgtatgccagtttttaggtgcttgcctacattgaaac
ctgccctaagttctgtgttcaataccacatgccacttggtggcgatgcta
tcatggagcaggaacata
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtcttaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaattgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgtttatgtctcccttttcattttctgattttgtta
attaggattatgtcccctgtgccctttagtgagtctagctaaagggttta
tcttatcttgttgatttttctcaaagaaccaactcctcgttgggtaaatt
ctttgaatagttcttctttgtttccacttgggttgatttcacccctgagt
ttgattatttcctgccgtctacccctcttgggtgaatttgctcccttttt
tt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_106848656_106849730
seq2: B6Ng01-080M11.b_47_1114 (reverse)

seq1  TATGTTCCTGCCTCATGATTAGCATCTGCCACCAAGGTTGCATGTGGTAT  50
      |||||||||||  ||||| ||||||| |||||||| || |||||||||||
seq2  TATGTTCCTGCTCCATGA-TAGCATC-GCCACCAA-GTGGCATGTGGTAT  47

seq1  TGAACACAGAACCTAGGGCAGCTTTCATGTTAGGCAAGCACCCTACAAAC  100
      |||||||||||| |||||||| |||||   |||||||||| |||| ||||
seq2  TGAACACAGAACTTAGGGCAGGTTTCAATGTAGGCAAGCA-CCTAAAAAC  96

seq1  TGGCATACAACACCAGACCCTTGATTTTGACTTTTTTTTTTAAATACAGT  150
      ||||||||||||||||||||||||||||||| ||||||||||||||||| 
seq2  TGGCATACAACACCAGACCCTTGATTTTGAC-TTTTTTTTTAAATACAG-  144

seq1  TTTCACATCGTATGTTAGGCTGACCTGAAGCCTACAGTGCACCCCAGGCT  200
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTTCACATCGTATGTTAGGCTGA-CTGAAGCCTACAGTGCACCCCAGGCT  193

seq1  GACTTCGAACTCTCAGCCACTCTCCTATTTCAGTCTTATAAGTATTGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCGAACTCTCAGCCACTCTCCTATTTCAGTCTTATAAGTATTGGAA  243

seq1  TTTATGGACAAAAGCGTCAGAGGTTTGGGTTTTTACTAGGATAACAATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGACAAAAGCGTCAGAGGTTTGGGTTTTTACTAGGATAACAATCC  293

seq1  TAGATTAGTCCCTGGAGGAAACAAATGAGTGAACTCTCTCCATGTCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTAGTCCCTGGAGGAAACAAATGAGTGAACTCTCTCCATGTCTTCT  343

seq1  CAGAGTGTGGAAGGGGAGCACCATGAGAAAGCTGTGGAACTTCTCAAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGTGGAAGGGGAGCACCATGAGAAAGCTGTGGAACTTCTCAAGGC  393

seq1  TGCTAAGGACAGTGTGAAGCTGGTGGTCAGATACACCCCAAAAGTCCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAGGACAGTGTGAAGCTGGTGGTCAGATACACCCCAAAAGTCCTGG  443

seq1  AAGAGATGGAGGCTCGTTTCGAGAAGCTGCGGACAGCTCGGCGTCGACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATGGAGGCTCGTTTCGAGAAGCTGCGGACAGCTCGGCGTCGACAG  493

seq1  CAGCAGCAGTTGCTCATTCAGCAGCAGCAACAGCAGCAGCAACAACAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCAGTTGCTCATTCAGCAGCAGCAACAGCAGCAGCAACAACAACC  543

seq1  ACAACAAAACCACATGTCATAGGTGAGACTCACCCTCCTCCTCCCCGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAAACCACATGTCATAGGTGAGACTCACCCTCCTCCTCCCCGTGT  593

seq1  ACACGCTCCTGACATCCTAACGGTCGCCCTAGTCAGCCAACATAAAATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGCTCCTGACATCCTAACGGTCGCCCTAGTCAGCCAACATAAAATTG  643

seq1  CCAAGCATAGTAAACACCCAAGGACAATTAACCGAAAGAAAGATGATGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCATAGTAAACACCCAAGGACAATTAACCGAAAGAAAGATGATGAT  693

seq1  ATTCGAAAAAGTAAACAGGTTGTCCTGTTTCCATGAGTCATTCAGCTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGAAAAAGTAAACAGGTTGTCCTGTTTCCATGAGTCATTCAGCTACA  743

seq1  GTCTCCGCATATGGAAGATAATTTTGGAAAATATAATGCTATGGGAGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCGCATATGGAAGATAATTTTGGAAAATATAATGCTATGGGAGAGG  793

seq1  TACCTGCTAACTCCAGGATGCCTGTTTATAAACTATGATAATGCTATTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGCTAACTCCAGGATGCCTGTTTATAAACTATGATAATGCTATTTT  843

seq1  TTTTTTGCCAGATCTATACATGAATGGCAAGGTGATTCTAGTCCCCACTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGCCAGATCTATACATGAATGGCAAGGTGATTCTAGTCCCCACTC  893

seq1  ATCCCCTTAGCTAGTCGTCACTTTCACGGAGTATACAAACTGCGCTACTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTTAGCTAGTCGTCACTTTCACGGAGTATACAAACTGCGCTACTC  943

seq1  TATGGTGCTATTCCTGGCTACTTTAGATTAGAAAGATGCAGTGGATTAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGCTATTCCTGGCTACTTTAGATTAGAAAGATGCAGTGGATTAAG  993

seq1  AAGTTGTTGCACATGAAGAGTGCGATGGCAAAGCAAACAGTTAACACAGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTTGCACATGAAGAGTGCGATGGCAAAGCAAACAGTTAACACAGC  1043

seq1  GTGAGACACTGAAGGGTTGGAATTC  1075
      |||||||||||||||||||||||||
seq2  GTGAGACACTGAAGGGTTGGAATTC  1068

seq1: chr16_60775922_60776478
seq2: B6Ng01-080M11.g_408_972 (reverse)

seq1  AAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATC  50
      ||||||||| ||||||||||||||||||| ||||||||||||||||||||
seq2  AAAAAAAGGGAGCAAATTCACCCAAGAGGGGTAGACGGCAGGAAATAATC  50

seq1  AAACTCAGGGGTGAAATCAA-CCAAGTGGAAAC-AAGAAGAACTATTCAA  98
      |||||||||||||||||||| |||||||||||| ||||||||||||||||
seq2  AAACTCAGGGGTGAAATCAACCCAAGTGGAAACAAAGAAGAACTATTCAA  100

seq1  AGAATTAACCAAACGAGGAGTTGGTTCTTTGAG-AAAATCAACAAGAT-A  146
      |||||| ||| |||||||||||||||||||||| |||||||||||||| |
seq2  AGAATTTACCCAACGAGGAGTTGGTTCTTTGAGAAAAATCAACAAGATAA  150

seq1  GATAAACCC-TTAGCTAGACTCACTAAAGGGCACA-GGGACAAAATCCTA  194
      ||||||||| ||||||||||||||||||||||||| |||||| |||||||
seq2  GATAAACCCTTTAGCTAGACTCACTAAAGGGCACAGGGGACATAATCCTA  200

seq1  ATTAACAAAATCAG-AAATGAAAAGGGAGACAT-AACAACAGATCCTGAA  242
      |||||||||||||| |||||||||||||||||| ||||||||||||||||
seq2  ATTAACAAAATCAGAAAATGAAAAGGGAGACATAAACAACAGATCCTGAA  250

seq1  GAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAA  300

seq1  ACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTAC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATACCAGGTAC  350

seq1  CAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTGAATCAGGATCAAGTTGACCATCTAAACAGTCCCATATCACCT  400

seq1  AAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATAGAAGCAGTTATTAATAGTCTCCCAACCAAAAAAAGCCCAGG  450

seq1  ACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAA  500

seq1  TTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTA  550

seq1  CCCAACTCATTTTAT  557
      |||||||||||||||
seq2  CCCAACTCATTTTAT  565