BAC Information

Click to search

BAC

Clone NameB6Ng01-080O20
Chromosome10 (Build37)
Map Location 13,387,268 - 13,388,328
singlet/doubletsinglet
Overlap geneAig1
Upstream geneUtrn, LOC665172, Stx11, Sf3b5, Plagl1, 4930519B02Rik, Ltv1, LOC666829, Phactr2, LOC100039475, Fuca2, Pex3, Deadc1
Downstream geneEG666859, Hivep2, Gpr126, LOC100039571, LOC100039409, Vta1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080O20.bB6Ng01-080O20.g
ACCDH895930DH895931
length1,2291,057
definitionDH895930|Mus musculus domesticus DNA, BAC clone: B6Ng01-080O20, 5' end.DH895931|Mus musculus domesticus DNA, BAC clone: B6Ng01-080O20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatttggctttgttaagtggattggggacttgttatcctggtgtt
ctctatctcctctggctctcactttcttctgccacctcttctagagtttc
ctgagctctaaagggagggatttgatggagacatcccatttagtactgag
tttttaaaggtctctcactctctgaataatgtctacctgtgcatctctgt
atttgttcctatctgccacagaagaacgccactctaatgatggctgaaca
agtcactgatctgtgagaataccaggatattattagtagtcactttatca
ctacattgtttctttttcttttaaagaccagtagaatttgattttatgct
atgcctcctgggtatctagtccctggtttttggctatccagtcagtgttg
ggtatgggttctatcttgtagagtggaccttaaattggatcgaattactc
ccaagagctttgtaccaccatcgccacacatattttgcaggtaggatacc
attgtagatcaaaggatttgtggctgggtttatgcttatattcccttttg
gtagcctgcagagtacttgatactagaacataggggtgatggttcaatgt
aggcaccagctcaacctctccatgtttaatgagttgtgtggattgttgtc
ttcagcaaagaagacttgttcttttgtggagaacaacccattgtcttggc
aacaggcttgattgtttggggatttccatgggaccactttggccagcaat
ttcaattgaataataacttagtcctattactagaagcatagttttggtga
caggatatggccagttgggactttgtttccccactattttggctacttca
ttagtattgctttcatatattttaggaagattctactgcactagagttcc
ataccacccttcaaatatccctcaattctagctgtctctttccacattcc
ctcccttcctcttcccatttgatcctccacccctccctctgctcaataaa
atcaattttatttccccatcacagtggagaatccattttgtcttcccagt
ccctctctataaggtagcccttagtacttcgggttatcattaacttaaca
gctaatatgcaacccaagcaaatcctatccatttttatcttttggtcgca
tccctcacctcagagatttttctgagtcatcactgccaggcaacctatag
atatgaagacgctttggaagggccgtatc
gaattcaatctgaatttccctcaataaaactcatggctggttttccttaa
ctttaatcacttggaacttctcaaagcacacaggtgccaaacatcaagct
gacacattgaacaccggagggaacatgtgttctttcaggagggaggcggg
gactcagcaagggaccattacgatccatgtgatcatcggagttggctgct
gagagaaagccacacattcaaactgggaggcgaggaggaactgcctgaat
tccacagcagatatcatagttttccacacttttgcagaaagtgacttcac
ttactattctggccctccaaggcatgcaatgcttttcattgggacaacta
acaattcctcattgtcttcccgactgtctgtcccatcccacatctctctg
gccacttctggagctcctgatttaagtagtgccctgtgtgaaaacatctc
tgctattatcacagttttgcttctgtttattcattttccactcaacatac
atggaccaggcctaagtggtgtcagagatgggaacacagcagttcatggt
gtagatgtggcccatgaccagaactgacggtcccagactcagagctacac
ggccctgaagtgacacactacactcgaaccactgctcaggacagccttag
aacattgatatgtgttctttctaaagtttaatgtttgtttgttactctga
attaaatgttcaaaagctctaaaagctttatgtttaaagaagtcacaaca
ccctgcctcaagaattgcagcccttagctgcctcatcacacctggccctg
cccctcaagccaagtcacatctaattctttcagcttttgcttcaagcctt
tgtcatatatttattttttaaagagtatactgcattcccagagctgagga
actctgggcatttgacagttgctgtgcaaacacacattgtgttctttagt
gataatgactcttagtaggtgatcacacaccctactagaattggttagcc
cattcctaggacagctgggcatcacaagtaaacctgatggcaaagtagaa
gaaggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_13387268_13388328
seq2: B6Ng01-080O20.g_69_1125

seq1  GAATTCAATCTGAATTTCCCTCAATAAAACTCATGGCTGGTTTTCCTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCTGAATTTCCCTCAATAAAACTCATGGCTGGTTTTCCTTAA  50

seq1  CTTTAATCACTTGGAACTTCTCAAAGCACACAGGTGCCAAACATCAAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATCACTTGGAACTTCTCAAAGCACACAGGTGCCAAACATCAAGCT  100

seq1  GACACATTGAACACCGGAGGGAACATGTGTTCTTTCAGGAGGGAGGCGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATTGAACACCGGAGGGAACATGTGTTCTTTCAGGAGGGAGGCGGG  150

seq1  GACTCAGCAAGGGACCATTACGATCCATGTGATCATCGGAGTTGGCTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGCAAGGGACCATTACGATCCATGTGATCATCGGAGTTGGCTGCT  200

seq1  GAGAGAAAGCCACACATTCAAACTGGGAGGCGAGGAGGAACTGCCTGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAAGCCACACATTCAAACTGGGAGGCGAGGAGGAACTGCCTGAAT  250

seq1  TCCACAGCAGATATCATAGTTTTCCACACTTTTGCAGAAAGTGACTTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGCAGATATCATAGTTTTCCACACTTTTGCAGAAAGTGACTTCAC  300

seq1  TTACTATTCTGGCCCTCCAAGGCATGCAATGCTTTTCATTGGGACAACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATTCTGGCCCTCCAAGGCATGCAATGCTTTTCATTGGGACAACTA  350

seq1  ACAATTCCTCATTGTCTTCCCGACTGTCTGTCCCATCCCACATCTCTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTCCTCATTGTCTTCCCGACTGTCTGTCCCATCCCACATCTCTCTG  400

seq1  GCCACTTCTGGAGCTCCTGATTTAAGTAGTGCCCTGTGTGAAAACATCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTTCTGGAGCTCCTGATTTAAGTAGTGCCCTGTGTGAAAACATCTC  450

seq1  TGCTATTATCACAGTTTTGCTTCTGTTTATTCATTTTCCACTCAACATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTATCACAGTTTTGCTTCTGTTTATTCATTTTCCACTCAACATAC  500

seq1  ATGGACCAGGCCTAAGTGGTGTCAGAGATGGGAACACAGCAGTTCATGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACCAGGCCTAAGTGGTGTCAGAGATGGGAACACAGCAGTTCATGGT  550

seq1  GTAGATGTGGCCCATGACCAGAACTGACGGTCCCAGACTCAGAGCTACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATGTGGCCCATGACCAGAACTGACGGTCCCAGACTCAGAGCTACAC  600

seq1  GGCCCTGAAGTGACACACTACACTCGAACCACTGCTCAGGACAGCCTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGAAGTGACACACTACACTCGAACCACTGCTCAGGACAGCCTTAG  650

seq1  AACATTGATATGTGTTCTTTCTAAAGTTTAATGTTTGTTTGTTACTCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGATATGTGTTCTTTCTAAAGTTTAATGTTTGTTTGTTACTCTGA  700

seq1  ATTAAATGTTCAAAAGCTCTAAAAGCTTTATGTTTAAAGAAGTCACAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATGTTCAAAAGCTCTAAAAGCTTTATGTTTAAAGAAGTCACAACA  750

seq1  CCCTGCCTCAAGAATTGCAGCCCTTAGCTGCCTCATCACACCTGGCCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCTCAAGAATTGCAGCCCTTAGCTGCCTCATCACACCTGGCCCTG  800

seq1  CCCCTCAAGCCAAGTCACATCTAATTCTTTCAGCTTTTGCTTCAAGCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCAAGCCAAGTCACATCTAATTCTTTCAGCTTTTGCTTCAAGCCTT  850

seq1  TGTCATATATTTATTTTTTAAAGAGTATACTGCATTCCCAGAGCTGAGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATATATTTATTTTTTAAAGAGTATACTGCATTCCCAGAGCTGAGGA  900

seq1  ACTCTGGGCATTTGACAGTTGCTGTGCAAACACACATTGTGTTCTTTAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGGCATTTGACAGTTGCTGTGCAAACACACATTGTGTTCTTTAGT  950

seq1  GAT-ATGACTCTTAGTAGGGTGATCACACACCCTACTAAGAATTGGGTAA  999
      ||| ||||||||||||| ||||||||||||||||||| |||||| ||| |
seq2  GATAATGACTCTTAGTA-GGTGATCACACACCCTACT-AGAATT-GGTTA  997

seq1  GCCCAATTCCTAGGACAGCTGGGCATCACAAAGTAAAACTGATGGGAAAA  1049
      |||| |||||||||||||||||||||||| ||||||| ||||||| ||| 
seq2  GCCC-ATTCCTAGGACAGCTGGGCATCAC-AAGTAAACCTGATGGCAAAG  1045

seq1  GAAGAGAAGGAG  1061
       |  ||||||||
seq2  TAGAAGAAGGAG  1057